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Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Fragment)

 S4SGR1_SCYPA            Unreviewed;       181 AA.
S4SGR1;
16-OCT-2013, integrated into UniProtKB/TrEMBL.
16-OCT-2013, sequence version 1.
25-OCT-2017, entry version 19.
RecName: Full=Cytochrome c oxidase subunit 1 {ECO:0000256|RuleBase:RU000369};
EC=1.9.3.1 {ECO:0000256|RuleBase:RU000369};
Flags: Fragment;
Name=COI {ECO:0000313|EMBL:AFO54624.1};
Scylla paramamosain (Mud crab).
Mitochondrion {ECO:0000313|EMBL:AFO54624.1}.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Malacostraca;
Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Brachyura;
Eubrachyura; Portunoidea; Portunidae; Scylla.
NCBI_TaxID=85552 {ECO:0000313|EMBL:AFO54624.1};
[1] {ECO:0000313|EMBL:AFO54624.1}
NUCLEOTIDE SEQUENCE.
STRAIN=DAL_10 {ECO:0000313|EMBL:AFO54632.1},
DAL_19 {ECO:0000313|EMBL:AFO54635.1},
DAL_2 {ECO:0000313|EMBL:AFO54630.1},
DAL_20 {ECO:0000313|EMBL:AFO54636.1},
DAL_21 {ECO:0000313|EMBL:AFO54637.1},
RHU_16 {ECO:0000313|EMBL:AFO54624.1}, and
RHU_18 {ECO:0000313|EMBL:AFO54626.1};
Mohamad Rosly H.A.-A., Mohd Nor S.A., Md Naim D.;
"Taxonomic Revision of Mud Crab Genus Scylla in Malaysia.";
Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:AGH88842.1}
NUCLEOTIDE SEQUENCE.
STRAIN=KS_4 {ECO:0000313|EMBL:AGH88842.1}, and
KS_5 {ECO:0000313|EMBL:AGH88843.1};
Mohamad Rosly H.A.-A., Mohd Nor S.A., Md Naim D.;
"Phylogenetic revision of the genus Scylla (Portunidae) in Malaysia
inferred from partial mitochondrial cytochrome c oxidase I (COI)
sequences.";
Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|EMBL:AKF17609.1}
NUCLEOTIDE SEQUENCE.
STRAIN=6 {ECO:0000313|EMBL:AKF17611.1},
7 {ECO:0000313|EMBL:AKF17612.1}, and
KML_4 {ECO:0000313|EMBL:AKF17609.1};
Mohamad Rosly H.A.-A., Mohd Nor S.A., Md Naim D.;
"Phylogenetic analysis of mud crab genus Scylla and population genetic
structure of S. olivacea (Brachyura: Portunidae) in Malaysia.";
Submitted (AUG-2014) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Cytochrome c oxidase is the component of the respiratory
chain that catalyzes the reduction of oxygen to water. Subunits 1-
3 form the functional core of the enzyme complex. CO I is the
catalytic subunit of the enzyme. Electrons originating in
cytochrome c are transferred via the copper A center of subunit 2
and heme A of subunit 1 to the bimetallic center formed by heme A3
and copper B. {ECO:0000256|RuleBase:RU000369}.
-!- CATALYTIC ACTIVITY: 4 ferrocytochrome c + O(2) + 4 H(+) = 4
ferricytochrome c + 2 H(2)O. {ECO:0000256|RuleBase:RU000369}.
-!- PATHWAY: Energy metabolism; oxidative phosphorylation.
{ECO:0000256|RuleBase:RU000369}.
-!- SUBCELLULAR LOCATION: Mitochondrion inner membrane
{ECO:0000256|RuleBase:RU000369}; Multi-pass membrane protein
{ECO:0000256|RuleBase:RU000369}.
-!- SIMILARITY: Belongs to the heme-copper respiratory oxidase family.
{ECO:0000256|RuleBase:RU000369}.
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EMBL; JQ823041; AFO54624.1; -; Genomic_DNA.
EMBL; JQ823043; AFO54626.1; -; Genomic_DNA.
EMBL; JQ823047; AFO54630.1; -; Genomic_DNA.
EMBL; JQ823049; AFO54632.1; -; Genomic_DNA.
EMBL; JQ823052; AFO54635.1; -; Genomic_DNA.
EMBL; JQ823053; AFO54636.1; -; Genomic_DNA.
EMBL; JQ823054; AFO54637.1; -; Genomic_DNA.
EMBL; JX416422; AGH88842.1; -; Genomic_DNA.
EMBL; JX416423; AGH88843.1; -; Genomic_DNA.
EMBL; KM275631; AKF17609.1; -; Genomic_DNA.
EMBL; KM275633; AKF17611.1; -; Genomic_DNA.
EMBL; KM275634; AKF17612.1; -; Genomic_DNA.
UniPathway; UPA00705; -.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005743; C:mitochondrial inner membrane; IEA:UniProtKB-SubCell.
GO; GO:0070469; C:respiratory chain; IEA:UniProtKB-KW.
GO; GO:0004129; F:cytochrome-c oxidase activity; IEA:UniProtKB-EC.
GO; GO:0020037; F:heme binding; IEA:InterPro.
GO; GO:0005506; F:iron ion binding; IEA:InterPro.
GO; GO:0009060; P:aerobic respiration; IEA:InterPro.
GO; GO:0006119; P:oxidative phosphorylation; IEA:UniProtKB-UniPathway.
Gene3D; 1.20.210.10; -; 1.
InterPro; IPR023616; Cyt_c_oxase-like_su1_dom.
InterPro; IPR036927; Cyt_c_oxase-like_su1_sf.
InterPro; IPR000883; Cyt_C_Oxase_1.
PANTHER; PTHR10422; PTHR10422; 1.
Pfam; PF00115; COX1; 1.
PRINTS; PR01165; CYCOXIDASEI.
SUPFAM; SSF81442; SSF81442; 1.
PROSITE; PS50855; COX1; 1.
3: Inferred from homology;
Copper {ECO:0000256|RuleBase:RU000369};
Electron transport {ECO:0000256|RuleBase:RU000369};
Heme {ECO:0000256|RuleBase:RU000369};
Iron {ECO:0000256|RuleBase:RU000369};
Membrane {ECO:0000256|RuleBase:RU000369, ECO:0000256|SAM:Phobius};
Metal-binding {ECO:0000256|RuleBase:RU000369};
Mitochondrion {ECO:0000256|RuleBase:RU000369};
Mitochondrion inner membrane {ECO:0000256|RuleBase:RU000369};
Oxidoreductase {ECO:0000256|RuleBase:RU000369};
Respiratory chain {ECO:0000256|RuleBase:RU000369};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius};
Transport {ECO:0000256|RuleBase:RU000369}.
TRANSMEM 21 40 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 52 76 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 88 108 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 128 149 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 161 180 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 1 181 COX1. {ECO:0000259|PROSITE:PS50855}.
NON_TER 1 1 {ECO:0000313|EMBL:AFO54624.1}.
NON_TER 181 181 {ECO:0000313|EMBL:AFO54624.1}.
SEQUENCE 181 AA; 20115 MW; C5F545F11CC82336 CRC64;
GMISHIVSQE SGKKESFGTL GMIYAMMAIG ILGFIVWAHH MFTVGMDVDT RAYFTSATMI
IAVPTGIKIF SWLSTLHGTQ INYSPSMLWA LGFIFLFTVG GLTGVVLANS SIDIILHDTY
YVVAHFHYVL SMGAVFGIFA GIAHWFPLFT GLSLNPKWMK IHFFIMFTGV NITFFPQHFL
G


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