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Cytochrome c oxidase subunit 2

 G9B123_SCHJA            Unreviewed;       202 AA.
G9B123;
22-FEB-2012, integrated into UniProtKB/TrEMBL.
22-FEB-2012, sequence version 1.
25-OCT-2017, entry version 30.
RecName: Full=Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU000457};
Name=COX2 {ECO:0000313|EMBL:ADG47029.1};
Synonyms=cox2 {ECO:0000313|EMBL:AFI44238.1};
Schistosoma japonicum (Blood fluke).
Mitochondrion {ECO:0000313|EMBL:ADG47029.1}.
Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea; Strigeidida;
Schistosomatoidea; Schistosomatidae; Schistosoma.
NCBI_TaxID=6182 {ECO:0000313|EMBL:ADG47029.1};
[1] {ECO:0000313|EMBL:ADG47029.1}
NUCLEOTIDE SEQUENCE.
STRAIN=SJJWM32 {ECO:0000313|EMBL:ADG47029.1}, and
SJJYF25 {ECO:0000313|EMBL:ADG47041.1};
Zhao G., Lin R., Li J., Li X., Zhu X.;
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:ADG47029.1}
NUCLEOTIDE SEQUENCE.
STRAIN=SJJWM32 {ECO:0000313|EMBL:ADG47029.1}, and
SJJYF25 {ECO:0000313|EMBL:ADG47041.1};
PubMed=22446475; DOI=10.1016/j.meegid.2012.02.020;
Zhao G.H., Li J., Song H.Q., Li X.Y., Chen F., Lin R.Q., Yuan Z.G.,
Weng Y.B., Hu M., Zou F.C., Zhu X.Q.;
"A specific PCR assay for the identification and differentiation of
Schistosoma japonicum geographical isolates in mainland China based on
analysis of mitochondrial genome sequences.";
Infect. Genet. Evol. 12:1027-1036(2012).
[3] {ECO:0000313|EMBL:AFI44238.1}
NUCLEOTIDE SEQUENCE.
STRAIN=SJYYM2 {ECO:0000313|EMBL:AFI44238.1};
Li J., Lin R., Zhao G., Zhu X.;
"Comparative analyses of mitochondrial genome sequences of Schistosoma
japonicum isolates in Japan and the Philippines.";
Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|EMBL:AGV02221.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Taiwan Changhua {ECO:0000313|EMBL:AGV02221.1};
Ran J., Pin N.;
Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases.
[5] {ECO:0000313|EMBL:ALV84000.1}
NUCLEOTIDE SEQUENCE.
STRAIN=AHGC01 {ECO:0000313|EMBL:ALV84000.1};
PubMed=26686813; DOI=10.1038/srep18058;
Yin M., Zheng H.X., Su J., Feng Z., McManus D.P., Zhou X.N., Jin L.,
Hu W.;
"Co-dispersal of the blood fluke Schistosoma japonicum and Homo
sapiens in the Neolithic Age.";
Sci. Rep. 5:18058-18058(2015).
[6] {ECO:0000313|EMBL:ALV84012.1}
NUCLEOTIDE SEQUENCE.
STRAIN=AHGC02 {ECO:0000313|EMBL:ALV84012.1},
AHGC05 {ECO:0000313|EMBL:ALV84048.1},
AHGC06 {ECO:0000313|EMBL:ALV84060.1},
AHGC10 {ECO:0000313|EMBL:ALV84108.1},
AHTL03 {ECO:0000313|EMBL:ALV84132.1},
AHTL04 {ECO:0000313|EMBL:ALV84144.1},
AHTL08 {ECO:0000313|EMBL:ALV84192.1},
HBSS06 {ECO:0000313|EMBL:ALV84288.1},
HBSS07 {ECO:0000313|EMBL:ALV84300.1},
HBSS08 {ECO:0000313|EMBL:ALV84312.1},
HBSS10 {ECO:0000313|EMBL:ALV84336.1},
HNCD02 {ECO:0000313|EMBL:ALV84360.1},
HNYY01 {ECO:0000313|EMBL:ALV84468.1},
HNYY05 {ECO:0000313|EMBL:ALV84516.1},
JP0001 {ECO:0000313|EMBL:ALV84708.1},
JP0002 {ECO:0000313|EMBL:ALV84720.1},
JXDC02 {ECO:0000313|EMBL:ALV84744.1},
JXDC03 {ECO:0000313|EMBL:ALV84756.1},
JXDC04 {ECO:0000313|EMBL:ALV84768.1},
JXNC02 {ECO:0000313|EMBL:ALV84852.1},
JXNC03 {ECO:0000313|EMBL:ALV84864.1},
JXNC07 {ECO:0000313|EMBL:ALV84912.1}, and
JXNC10 {ECO:0000313|EMBL:ALV84948.1};
Yin M., Zheng H.-X., Su J., Feng Z., McManus D.P., Zhou X., Jin L.,
Hu W.;
"Co-dispersal of the blood fluke Schistosoma japonicum and Homo
sapiens in the Neolithic Age.";
Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Cytochrome c oxidase is the component of the respiratory
chain that catalyzes the reduction of oxygen to water. Subunits 1-
3 form the functional core of the enzyme complex. Subunit 2
transfers the electrons from cytochrome c via its binuclear copper
A center to the bimetallic center of the catalytic subunit 1.
{ECO:0000256|RuleBase:RU000457}.
-!- COFACTOR:
Name=Cu cation; Xref=ChEBI:CHEBI:23378;
Evidence={ECO:0000256|RuleBase:RU000457};
Note=Binds a copper A center. {ECO:0000256|RuleBase:RU000457};
-!- SUBCELLULAR LOCATION: Mitochondrion inner membrane
{ECO:0000256|RuleBase:RU000457}; Multi-pass membrane protein
{ECO:0000256|RuleBase:RU000457}.
-!- SIMILARITY: Belongs to the cytochrome c oxidase subunit 2 family.
{ECO:0000256|RuleBase:RU000457}.
-----------------------------------------------------------------------
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EMBL; HM120843; ADG47029.1; -; Genomic_DNA.
EMBL; HM120844; ADG47041.1; -; Genomic_DNA.
EMBL; JQ781215; AFI44238.1; -; Genomic_DNA.
EMBL; KF279410; AGV02221.1; -; Genomic_DNA.
EMBL; KU196299; ALV84000.1; -; Genomic_DNA.
EMBL; KU196300; ALV84012.1; -; Genomic_DNA.
EMBL; KU196303; ALV84048.1; -; Genomic_DNA.
EMBL; KU196304; ALV84060.1; -; Genomic_DNA.
EMBL; KU196308; ALV84108.1; -; Genomic_DNA.
EMBL; KU196310; ALV84132.1; -; Genomic_DNA.
EMBL; KU196311; ALV84144.1; -; Genomic_DNA.
EMBL; KU196315; ALV84192.1; -; Genomic_DNA.
EMBL; KU196323; ALV84288.1; -; Genomic_DNA.
EMBL; KU196324; ALV84300.1; -; Genomic_DNA.
EMBL; KU196325; ALV84312.1; -; Genomic_DNA.
EMBL; KU196327; ALV84336.1; -; Genomic_DNA.
EMBL; KU196329; ALV84360.1; -; Genomic_DNA.
EMBL; KU196338; ALV84468.1; -; Genomic_DNA.
EMBL; KU196342; ALV84516.1; -; Genomic_DNA.
EMBL; KU196358; ALV84708.1; -; Genomic_DNA.
EMBL; KU196359; ALV84720.1; -; Genomic_DNA.
EMBL; KU196361; ALV84744.1; -; Genomic_DNA.
EMBL; KU196362; ALV84756.1; -; Genomic_DNA.
EMBL; KU196363; ALV84768.1; -; Genomic_DNA.
EMBL; KU196370; ALV84852.1; -; Genomic_DNA.
EMBL; KU196371; ALV84864.1; -; Genomic_DNA.
EMBL; KU196375; ALV84912.1; -; Genomic_DNA.
EMBL; KU196378; ALV84948.1; -; Genomic_DNA.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005743; C:mitochondrial inner membrane; IEA:UniProtKB-SubCell.
GO; GO:0070469; C:respiratory chain; IEA:UniProtKB-KW.
GO; GO:0005507; F:copper ion binding; IEA:InterPro.
GO; GO:0004129; F:cytochrome-c oxidase activity; IEA:InterPro.
GO; GO:0022900; P:electron transport chain; IEA:InterPro.
Gene3D; 2.60.40.420; -; 1.
InterPro; IPR002429; CcO_II-like_C.
InterPro; IPR001505; Copper_CuA.
InterPro; IPR008972; Cupredoxin.
InterPro; IPR011759; Cyt_c_oxidase_su2_TM_dom.
InterPro; IPR036257; Cyt_c_oxidase_su2_TM_sf.
Pfam; PF00116; COX2; 1.
Pfam; PF02790; COX2_TM; 1.
SUPFAM; SSF49503; SSF49503; 1.
SUPFAM; SSF81464; SSF81464; 1.
PROSITE; PS00078; COX2; 1.
PROSITE; PS50857; COX2_CUA; 1.
PROSITE; PS50999; COX2_TM; 1.
3: Inferred from homology;
Copper {ECO:0000256|RuleBase:RU000457, ECO:0000256|SAAS:SAAS00517791};
Electron transport {ECO:0000256|RuleBase:RU000457,
ECO:0000256|SAAS:SAAS00924625};
Membrane {ECO:0000256|RuleBase:RU000457,
ECO:0000256|SAAS:SAAS00883111, ECO:0000256|SAM:Phobius};
Metal-binding {ECO:0000256|RuleBase:RU000457,
ECO:0000256|SAAS:SAAS00517846};
Mitochondrion {ECO:0000256|RuleBase:RU000457};
Mitochondrion inner membrane {ECO:0000256|RuleBase:RU000457};
Respiratory chain {ECO:0000256|RuleBase:RU000457,
ECO:0000256|SAAS:SAAS00924625};
Transmembrane {ECO:0000256|SAAS:SAAS00883111,
ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAAS:SAAS00883111,
ECO:0000256|SAM:Phobius};
Transport {ECO:0000256|RuleBase:RU000457,
ECO:0000256|SAAS:SAAS00924625}.
TRANSMEM 13 34 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 55 78 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 1 83 COX2_TM. {ECO:0000259|PROSITE:PS50999}.
DOMAIN 83 202 COX2_CUA. {ECO:0000259|PROSITE:PS50857}.
SEQUENCE 202 AA; 23475 MW; 5E85D4552A27F545 CRC64;
MRLNHELLIY YDLVNYVLFL CCFIPLWCMI VMCYQIYNSC NMSIMLPNES PFLEFIWTLI
PTLMVVILCF FNLNYLIYNS VQVMNEPIKI VGHQWYWTYE LLDGSVYDSF MTDFVNGVNK
PLRLERNISY ILLITSDDVI HSFSVPDLGL KMDAIPGRIN SVIGSFDRFG VFVGYCTELC
GAGHSYMPIV VEVVEGNRLG WY


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