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DNA polymerase gamma 35kD (EC 2.7.7.7) (GH14674p2)

 Q9VJV8_DROME            Unreviewed;       361 AA.
Q9VJV8; Q9NKE7;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-OCT-2002, sequence version 2.
22-NOV-2017, entry version 139.
SubName: Full=DNA polymerase gamma 35kD {ECO:0000313|EMBL:AAF53341.2};
EC=2.7.7.7 {ECO:0000313|EMBL:AAF53341.2};
SubName: Full=GH14674p2 {ECO:0000313|EMBL:AAK92915.1};
Name=DNApol-gamma35 {ECO:0000313|EMBL:AAF53341.2,
ECO:0000313|FlyBase:FBgn0004407};
Synonyms=BG:DS00941.9 {ECO:0000313|EMBL:AAF53341.2},
br16 {ECO:0000313|EMBL:AAF53341.2},
CG33084 {ECO:0000313|EMBL:AAF53341.2},
CG8969 {ECO:0000313|EMBL:AAF53341.2},
D-pol gamma-beta {ECO:0000313|EMBL:AAF53341.2},
Dmel\CG33650 {ECO:0000313|EMBL:AAF53341.2},
DNA pol-gam.35 {ECO:0000313|EMBL:AAF53341.2},
DNApol-gamma {ECO:0000313|EMBL:AAF53341.2},
DNApol-gamma-35 {ECO:0000313|FlyBase:FBgn0004407},
DNApol-gamma.35 {ECO:0000313|EMBL:AAF53341.2},
l(2)34De {ECO:0000313|EMBL:AAF53341.2},
l(2)br16 {ECO:0000313|EMBL:AAF53341.2},
MtPolB {ECO:0000313|EMBL:AAF53341.2},
Pol gamma {ECO:0000313|EMBL:AAF53341.2},
pol gamma-beta {ECO:0000313|EMBL:AAF53341.2},
pol gamma35 {ECO:0000313|EMBL:AAF53341.2},
PolG {ECO:0000313|EMBL:AAF53341.2},
Polg {ECO:0000313|EMBL:AAF53341.2},
Polgamma {ECO:0000313|EMBL:AAF53341.2},
polgamma {ECO:0000313|EMBL:AAF53341.2},
polgamma-beta {ECO:0000313|EMBL:AAF53341.2};
ORFNames=CG33650 {ECO:0000313|EMBL:AAF53341.2,
ECO:0000313|FlyBase:FBgn0004407},
Dmel_CG33650 {ECO:0000313|EMBL:AAF53341.2};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF53341.2, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF53341.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF53341.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF53341.2, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF53341.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AAF53341.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAF53341.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AAF53341.2}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AAF53341.2}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF53341.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[10] {ECO:0000313|EMBL:AAF53341.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[11] {ECO:0000313|EMBL:AAK92915.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Berkeley {ECO:0000313|EMBL:AAK92915.1};
Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.;
Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases.
[12] {ECO:0000313|EMBL:AAF53341.2}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; AE014134; AAF53341.2; -; Genomic_DNA.
EMBL; AY051491; AAK92915.1; -; mRNA.
RefSeq; NP_001027262.1; NM_001032091.3.
UniGene; Dm.6580; -.
STRING; 7227.FBpp0099758; -.
EnsemblMetazoa; FBtr0091627; FBpp0099758; FBgn0004407.
GeneID; 3772064; -.
KEGG; dme:Dmel_CG33650; -.
UCSC; CG33650-RA; d. melanogaster.
CTD; 3772064; -.
FlyBase; FBgn0004407; DNApol-gamma35.
eggNOG; KOG2298; Eukaryota.
eggNOG; COG0423; LUCA.
KO; K02333; -.
OMA; QRESKIW; -.
OrthoDB; EOG091G0B28; -.
GenomeRNAi; 3772064; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0004407; -.
GO; GO:1904115; C:axon cytoplasm; IEA:GOC.
GO; GO:0005760; C:gamma DNA polymerase complex; IPI:FlyBase.
GO; GO:0005739; C:mitochondrion; IPI:FlyBase.
GO; GO:0003887; F:DNA-directed DNA polymerase activity; ISS:FlyBase.
GO; GO:0004820; F:glycine-tRNA ligase activity; IBA:GO_Central.
GO; GO:0019896; P:axonal transport of mitochondrion; IMP:FlyBase.
GO; GO:0006281; P:DNA repair; IEA:InterPro.
GO; GO:0006261; P:DNA-dependent DNA replication; IPI:FlyBase.
GO; GO:0006264; P:mitochondrial DNA replication; IMP:FlyBase.
GO; GO:0000002; P:mitochondrial genome maintenance; IMP:FlyBase.
GO; GO:0070150; P:mitochondrial glycyl-tRNA aminoacylation; IBA:GO_Central.
GO; GO:0007005; P:mitochondrion organization; IMP:FlyBase.
Gene3D; 3.40.50.800; -; 1.
InterPro; IPR004154; Anticodon-bd.
InterPro; IPR036621; Anticodon-bd_dom_sf.
InterPro; IPR027031; Gly-tRNA_synthase/POLG2.
InterPro; IPR027030; POLG2.
PANTHER; PTHR10745; PTHR10745; 2.
PANTHER; PTHR10745:SF8; PTHR10745:SF8; 2.
Pfam; PF03129; HGTP_anticodon; 1.
SUPFAM; SSF52954; SSF52954; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Nucleotidyltransferase {ECO:0000313|EMBL:AAF53341.2};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Transferase {ECO:0000313|EMBL:AAF53341.2}.
DOMAIN 256 357 HGTP_anticodon.
{ECO:0000259|Pfam:PF03129}.
SEQUENCE 361 AA; 41027 MW; 0762099440E5931C CRC64;
MSRIQRCFKS LASAGFFRTV EDNKLELLSH GREYAKLLQQ HWTRLRPLAA HLGATKEPIN
PVNIQRFSFP QSQQFRNNFQ KLVKDHPRKA KCPTLLKHQS TCSGPTSNSL FGIKGPTLHL
TTDFLVEPHR ALEHFYNMQR ESKIWWMRLS SNPSRYRIVP CDLAEDLNPN DYQAIDIRTS
YGDAGEVTVE QLSLVRIVDD KDFRLPDART GEIVQPTVIR SVIELETTTC ALLLDGCDHG
RDSQSLLLHR VLAPYQCGIA CVESDSELSA DLSDLCQHLK HVLNHAGLRL SEGDGIRTTK
NASHLAEHLL ETDMLGIPYT LVINEQTLRN GLMQLRSRDT RLAETIHISD VPDYLLNIFK
N


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