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DNA repair protein RAD51 homolog (Fragment)

 R0KMM6_ANAPL            Unreviewed;       264 AA.
R0KMM6;
26-JUN-2013, integrated into UniProtKB/TrEMBL.
26-JUN-2013, sequence version 1.
23-MAY-2018, entry version 43.
RecName: Full=DNA repair protein RAD51 homolog {ECO:0000256|RuleBase:RU364139};
Flags: Fragment;
Name=RAD51 {ECO:0000313|Ensembl:ENSAPLP00000003989};
ORFNames=Anapl_12415 {ECO:0000313|EMBL:EOA94448.1};
Anas platyrhynchos (Mallard) (Anas boschas).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae;
Anatinae; Anas.
NCBI_TaxID=8839 {ECO:0000313|EMBL:EOA94448.1};
[1] {ECO:0000313|EMBL:EOA94448.1, ECO:0000313|Ensembl:ENSAPLP00000003989}
NUCLEOTIDE SEQUENCE.
Li N.;
"The genome sequence and transcriptome of duck provide insight into
the interaction host.";
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSAPLP00000003989}
NUCLEOTIDE SEQUENCE.
PubMed=23749191; DOI=10.1038/ng.2657;
Huang Y., Li Y., Burt D.W., Chen H., Zhang Y., Qian W., Kim H.,
Gan S., Zhao Y., Li J., Yi K., Feng H., Zhu P., Li B., Liu Q.,
Fairley S., Magor K.E., Du Z., Hu X., Goodman L., Tafer H., Vignal A.,
Lee T., Kim K.W., Sheng Z., An Y., Searle S., Herrero J.,
Groenen M.A., Crooijmans R.P., Faraut T., Cai Q., Webster R.G.,
Aldridge J.R., Warren W.C., Bartschat S., Kehr S., Marz M.,
Stadler P.F., Smith J., Kraus R.H., Zhao Y., Ren L., Fei J.,
Morisson M., Kaiser P., Griffin D.K., Rao M., Pitel F., Wang J.,
Li N.;
"The duck genome and transcriptome provide insight into an avian
influenza virus reservoir species.";
Nat. Genet. 45:776-783(2013).
[3] {ECO:0000313|Ensembl:ENSAPLP00000003989}
IDENTIFICATION.
Ensembl;
Submitted (SEP-2013) to UniProtKB.
-!- FUNCTION: Plays an important role in homologous strand exchange, a
key step in DNA repair through homologous recombination. Binds to
single and double-stranded DNA and exhibits DNA-dependent ATPase
activity. Catalyzes the recognition of homology and strand
exchange between homologous DNA partners to form a joint molecule
between a processed DNA break and the repair template. Binds to
single-stranded DNA in an ATP-dependent manner to form
nucleoprotein filaments which are essential for the homology
search and strand exchange. {ECO:0000256|RuleBase:RU364139}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU364139}.
-!- SIMILARITY: Belongs to the RecA family. RAD51 subfamily.
{ECO:0000256|RuleBase:RU364139}.
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EMBL; ADON01134705; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; KB744758; EOA94448.1; -; Genomic_DNA.
Ensembl; ENSAPLT00000004596; ENSAPLP00000003989; ENSAPLG00000004452.
GeneTree; ENSGT00890000139508; -.
OMA; YNTDHQT; -.
OrthoDB; EOG091G09QY; -.
Proteomes; UP000016666; Unassembled WGS sequence.
GO; GO:0000800; C:lateral element; IEA:Ensembl.
GO; GO:0000784; C:nuclear chromosome, telomeric region; IEA:Ensembl.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0003682; F:chromatin binding; IEA:Ensembl.
GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO; GO:0008094; F:DNA-dependent ATPase activity; IEA:InterPro.
GO; GO:0003690; F:double-stranded DNA binding; IEA:InterPro.
GO; GO:0000150; F:recombinase activity; IEA:InterPro.
GO; GO:0003697; F:single-stranded DNA binding; IEA:Ensembl.
GO; GO:0071312; P:cellular response to alkaloid; IEA:Ensembl.
GO; GO:0072711; P:cellular response to hydroxyurea; IEA:Ensembl.
GO; GO:0070192; P:chromosome organization involved in meiotic cell cycle; IEA:Ensembl.
GO; GO:1990426; P:mitotic recombination-dependent replication fork processing; IEA:InterPro.
GO; GO:0001932; P:regulation of protein phosphorylation; IEA:Ensembl.
GO; GO:1990414; P:replication-born double-strand break repair via sister chromatid exchange; IEA:Ensembl.
GO; GO:0000722; P:telomere maintenance via recombination; IEA:Ensembl.
GO; GO:0010833; P:telomere maintenance via telomere lengthening; IEA:Ensembl.
CDD; cd01123; Rad51_DMC1_radA; 1.
InterPro; IPR003593; AAA+_ATPase.
InterPro; IPR011941; DNA_recomb/repair_Rad51.
InterPro; IPR013632; DNA_recomb/repair_Rad51_C.
InterPro; IPR011939; DNA_repair_and_recomb_RadB.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR033925; Rad51_DMC1_RadA.
InterPro; IPR020588; RecA_ATP-bd.
InterPro; IPR020587; RecA_monomer-monomer_interface.
Pfam; PF08423; Rad51; 1.
PIRSF; PIRSF003336; RadB; 1.
SMART; SM00382; AAA; 1.
SUPFAM; SSF52540; SSF52540; 1.
TIGRFAMs; TIGR02239; recomb_RAD51; 1.
PROSITE; PS50162; RECA_2; 1.
PROSITE; PS50163; RECA_3; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|RuleBase:RU003422};
Complete proteome {ECO:0000313|Proteomes:UP000016666};
DNA damage {ECO:0000256|RuleBase:RU364139};
DNA recombination {ECO:0000256|RuleBase:RU364139};
DNA repair {ECO:0000256|RuleBase:RU364139};
DNA-binding {ECO:0000256|RuleBase:RU364139};
Nucleotide-binding {ECO:0000256|RuleBase:RU003422};
Nucleus {ECO:0000256|RuleBase:RU364139};
Reference proteome {ECO:0000313|Proteomes:UP000016666}.
DOMAIN 23 194 RECA_2. {ECO:0000259|PROSITE:PS50162}.
DOMAIN 201 264 RECA_3. {ECO:0000259|PROSITE:PS50163}.
NON_TER 1 1 {ECO:0000313|EMBL:EOA94448.1}.
NON_TER 264 264 {ECO:0000313|EMBL:EOA94448.1}.
SEQUENCE 264 AA; 28734 MW; 6F721DECDE1C928D CRC64;
AEAAKLVPMG FTTATEFHQR RSEIIQITTG SKELDKLLQG GIETGSITEL FGEFRTGKTQ
LCHTLAVTCQ LPIDRGGGEG KAMYIDTEGT FRPERLLAVA ERYGLSGSDV LDNVAYARGF
NTDHQTQLLY QASAMMAESR YALLIVDSAT ALYRTDYSGR GELSARQMHL ARFLRMLLRL
ADEFGVAVVI TNQVVAQVDG AAMFAADPKK PIGGNIIAHA STTRLYLRKG RGETRICKIY
DSPCLPEAEA MFAINADGVG DAKD


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