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DNA-directed RNA polymerase III subunit RPC9 (RNA polymerase III subunit C9) (Calcitonin gene-related peptide-receptor component protein) (CGRP-RCP) (CGRP-receptor component protein) (CGRPRCP) (HsC17)

 RPC9_HUMAN              Reviewed;         148 AA.
O75575; A8MUZ4; A8MW23; B2R4H4; B4E198; Q3KRA3; Q5HYF1; Q8IXL4;
10-MAY-2002, integrated into UniProtKB/Swiss-Prot.
01-NOV-1998, sequence version 1.
10-OCT-2018, entry version 140.
RecName: Full=DNA-directed RNA polymerase III subunit RPC9;
Short=RNA polymerase III subunit C9;
AltName: Full=Calcitonin gene-related peptide-receptor component protein;
Short=CGRP-RCP;
Short=CGRP-receptor component protein;
Short=CGRPRCP;
Short=HsC17;
Name=CRCP;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
Luebke A.E., Dahl G.P., Dickerson I.M.;
"Human CGRP-receptor component protein (RCP) ORF.";
Submitted (JUN-1998) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND TISSUE SPECIFICITY.
PubMed=10067875; DOI=10.1210/endo.140.3.6541;
Balkan W., Oates E.L., Howard G.A., Roos B.A.;
"Testes exhibit elevated expression of calcitonin gene-related peptide
receptor component protein.";
Endocrinology 140:1459-1469(1999).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 3).
TISSUE=Adrenal gland, Brain, and Kidney;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4).
TISSUE=Fetal muscle;
PubMed=16344560; DOI=10.1101/gr.4039406;
Kimura K., Wakamatsu A., Suzuki Y., Ota T., Nishikawa T.,
Yamashita R., Yamamoto J., Sekine M., Tsuritani K., Wakaguri H.,
Ishii S., Sugiyama T., Saito K., Isono Y., Irie R., Kushida N.,
Yoneyama T., Otsuka R., Kanda K., Yokoi T., Kondo H., Wagatsuma M.,
Murakawa K., Ishida S., Ishibashi T., Takahashi-Fujii A., Tanase T.,
Nagai K., Kikuchi H., Nakai K., Isogai T., Sugano S.;
"Diversification of transcriptional modulation: large-scale
identification and characterization of putative alternative promoters
of human genes.";
Genome Res. 16:55-65(2006).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Adipose tissue;
PubMed=17974005; DOI=10.1186/1471-2164-8-399;
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U.,
Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H.,
Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K.,
Ottenwaelder B., Poustka A., Wiemann S., Schupp I.;
"The full-ORF clone resource of the German cDNA consortium.";
BMC Genomics 8:399-399(2007).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=12853948; DOI=10.1038/nature01782;
Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H.,
Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R.,
Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E.,
Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Cordes M., Du H.,
Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A.,
Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J.,
Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A.,
Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S.,
Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M.,
Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C.,
Latreille P., Miller N., Johnson D., Murray J., Woessner J.P.,
Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J.,
Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L.,
Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R.,
Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E.,
Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K.,
Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S.,
Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M.,
Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R.,
Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D.,
Waterston R.H., Wilson R.K.;
"The DNA sequence of human chromosome 7.";
Nature 424:157-164(2003).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[8]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
TISSUE=Testis;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[9]
IDENTIFICATION IN THE RNA POL III COMPLEX, IDENTIFICATION BY MASS
SPECTROMETRY, AND INTERACTION WITH RPC8.
PubMed=12391170; DOI=10.1128/MCB.22.22.8044-8055.2002;
Hu P., Wu S., Sun Y., Yuan C.-C., Kobayashi R., Myers M.P.,
Hernandez N.;
"Characterization of human RNA polymerase III identifies orthologues
for Saccharomyces cerevisiae RNA polymerase III subunits.";
Mol. Cell. Biol. 22:8044-8055(2002).
[10]
IDENTIFICATION IN THE RNA POL III COMPLEX, AND IDENTIFICATION BY MASS
SPECTROMETRY.
PubMed=12482973; DOI=10.1128/MCB.23.1.195-205.2003;
Siaut M., Zaros C., Levivier E., Ferri M.L., Court M., Werner M.,
Callebaut I., Thuriaux P., Sentenac A., Conesa C.;
"An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the
orthologue of mammalian CGRP-RCP.";
Mol. Cell. Biol. 23:195-205(2003).
-!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription
of DNA into RNA using the four ribonucleoside triphosphates as
substrates. Specific peripheric component of RNA polymerase III
which synthesizes small RNAs, such as 5S rRNA and tRNAs. Plays a
key role in sensing and limiting infection by intracellular
bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor
involved in innate immune response. Can sense non-self dsDNA that
serves as template for transcription into dsRNA. The non-self RNA
polymerase III transcripts induce type I interferon and NF- Kappa-
B through the RIG-I pathway (By similarity). {ECO:0000250}.
-!- FUNCTION: Accessory protein for the calcitonin gene-related
peptide (CGRP) receptor. It modulates CGRP responsiveness in a
variety of tissues.
-!- SUBUNIT: Component of the RNA polymerase III (Pol III) complex
consisting of 17 subunits (By similarity). Interacts with
POLR3H/RPC8. POLR3H/RPC8 and CRCP/RPC9 probably form a Pol III
subcomplex. {ECO:0000250, ECO:0000269|PubMed:12391170,
ECO:0000269|PubMed:12482973}.
-!- INTERACTION:
Q99081:TCF12; NbExp=3; IntAct=EBI-2654687, EBI-722877;
Q8NF64:ZMIZ2; NbExp=3; IntAct=EBI-2654687, EBI-745786;
Q8NF64-2:ZMIZ2; NbExp=3; IntAct=EBI-2654687, EBI-10182121;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. Cell membrane
{ECO:0000250}; Peripheral membrane protein {ECO:0000250};
Cytoplasmic side {ECO:0000250}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=4;
Name=1;
IsoId=O75575-1; Sequence=Displayed;
Name=2;
IsoId=O75575-2; Sequence=VSP_007538;
Name=3;
IsoId=O75575-3; Sequence=VSP_043249, VSP_007538;
Note=No experimental confirmation available.;
Name=4;
IsoId=O75575-4; Sequence=VSP_046273;
Note=No experimental confirmation available.;
-!- TISSUE SPECIFICITY: Ubiquitous. Most prevalent in testis.
{ECO:0000269|PubMed:10067875}.
-!- SIMILARITY: Belongs to the eukaryotic RPC9 RNA polymerase subunit
family. {ECO:0000305}.
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EMBL; AF073792; AAC25992.1; -; mRNA.
EMBL; U51134; AAD05036.1; -; mRNA.
EMBL; AK290553; BAF83242.1; -; mRNA.
EMBL; AK303737; BAG64710.1; -; mRNA.
EMBL; AK311829; BAG34771.1; -; mRNA.
EMBL; BP233211; -; NOT_ANNOTATED_CDS; mRNA.
EMBL; BX647867; CAI46069.1; -; mRNA.
EMBL; AC068533; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH471140; EAX07941.1; -; Genomic_DNA.
EMBL; BC040107; AAH40107.1; -; mRNA.
EMBL; BC105808; AAI05809.1; -; mRNA.
CCDS; CCDS47599.1; -. [O75575-2]
CCDS; CCDS47600.1; -. [O75575-4]
CCDS; CCDS55116.1; -. [O75575-3]
CCDS; CCDS5532.1; -. [O75575-1]
RefSeq; NP_001035737.1; NM_001040647.1. [O75575-2]
RefSeq; NP_001035738.1; NM_001040648.1. [O75575-4]
RefSeq; NP_001135886.1; NM_001142414.1. [O75575-3]
RefSeq; NP_055293.1; NM_014478.4. [O75575-1]
UniGene; Hs.300684; -.
ProteinModelPortal; O75575; -.
SMR; O75575; -.
BioGrid; 118121; 27.
IntAct; O75575; 10.
STRING; 9606.ENSP00000378736; -.
iPTMnet; O75575; -.
PhosphoSitePlus; O75575; -.
BioMuta; CRCP; -.
EPD; O75575; -.
MaxQB; O75575; -.
PaxDb; O75575; -.
PeptideAtlas; O75575; -.
PRIDE; O75575; -.
ProteomicsDB; 50092; -.
ProteomicsDB; 50093; -. [O75575-2]
ProteomicsDB; 50094; -. [O75575-3]
DNASU; 27297; -.
Ensembl; ENST00000338592; ENSP00000340044; ENSG00000241258. [O75575-2]
Ensembl; ENST00000395326; ENSP00000378736; ENSG00000241258. [O75575-1]
Ensembl; ENST00000398684; ENSP00000381674; ENSG00000241258. [O75575-4]
Ensembl; ENST00000431089; ENSP00000388653; ENSG00000241258. [O75575-3]
GeneID; 27297; -.
KEGG; hsa:27297; -.
UCSC; uc003tus.4; human. [O75575-1]
CTD; 27297; -.
DisGeNET; 27297; -.
EuPathDB; HostDB:ENSG00000241258.6; -.
GeneCards; CRCP; -.
HGNC; HGNC:17888; CRCP.
HPA; HPA007216; -.
MIM; 606121; gene.
neXtProt; NX_O75575; -.
OpenTargets; ENSG00000241258; -.
PharmGKB; PA164718123; -.
eggNOG; KOG4168; Eukaryota.
eggNOG; ENOG4111TUG; LUCA.
GeneTree; ENSGT00390000014189; -.
HOGENOM; HOG000244081; -.
HOVERGEN; HBG023697; -.
InParanoid; O75575; -.
OMA; YLSKTPC; -.
OrthoDB; EOG091G0ZNH; -.
PhylomeDB; O75575; -.
TreeFam; TF323294; -.
Reactome; R-HSA-1834949; Cytosolic sensors of pathogen-associated DNA.
Reactome; R-HSA-73780; RNA Polymerase III Chain Elongation.
Reactome; R-HSA-73980; RNA Polymerase III Transcription Termination.
Reactome; R-HSA-749476; RNA Polymerase III Abortive And Retractive Initiation.
Reactome; R-HSA-76061; RNA Polymerase III Transcription Initiation From Type 1 Promoter.
Reactome; R-HSA-76066; RNA Polymerase III Transcription Initiation From Type 2 Promoter.
Reactome; R-HSA-76071; RNA Polymerase III Transcription Initiation From Type 3 Promoter.
ChiTaRS; CRCP; human.
GeneWiki; RCP9; -.
GenomeRNAi; 27297; -.
PRO; PR:O75575; -.
Proteomes; UP000005640; Chromosome 7.
Bgee; ENSG00000241258; Expressed in 213 organ(s), highest expression level in frontal cortex.
ExpressionAtlas; O75575; baseline and differential.
Genevisible; O75575; HS.
GO; GO:0001669; C:acrosomal vesicle; IEA:Ensembl.
GO; GO:0005829; C:cytosol; TAS:Reactome.
GO; GO:0009360; C:DNA polymerase III complex; IDA:UniProtKB.
GO; GO:0005654; C:nucleoplasm; TAS:Reactome.
GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO; GO:0005666; C:RNA polymerase III complex; IBA:GO_Central.
GO; GO:0001635; F:calcitonin gene-related peptide receptor activity; IEA:Ensembl.
GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IDA:UniProtKB.
GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
GO; GO:0051607; P:defense response to virus; IEA:UniProtKB-KW.
GO; GO:0045087; P:innate immune response; IEA:UniProtKB-KW.
GO; GO:0007218; P:neuropeptide signaling pathway; IEA:Ensembl.
GO; GO:0006383; P:transcription by RNA polymerase III; IDA:UniProtKB.
GO; GO:0006384; P:transcription initiation from RNA polymerase III promoter; IBA:GO_Central.
Gene3D; 1.20.1250.40; -; 1.
InterPro; IPR010997; HRDC-like_sf.
InterPro; IPR006590; RNA_pol_Rpb4/RPC9_core.
InterPro; IPR005574; RPB4/RPC9.
InterPro; IPR038324; Rpb4/RPC9_sf.
InterPro; IPR038846; RPC9.
PANTHER; PTHR15561; PTHR15561; 1.
Pfam; PF03874; RNA_pol_Rpb4; 1.
SMART; SM00657; RPOL4c; 1.
SUPFAM; SSF47819; SSF47819; 1.
1: Evidence at protein level;
Alternative splicing; Antiviral defense; Cell membrane;
Complete proteome; DNA-directed RNA polymerase; Immunity;
Innate immunity; Membrane; Nucleus; Reference proteome; Transcription.
CHAIN 1 148 DNA-directed RNA polymerase III subunit
RPC9.
/FTId=PRO_0000079335.
VAR_SEQ 1 13 MEVKDANSALLSN -> MQRGDPGEHLGARSWHLGAVGGGG
DSCEVKDANSALLSN (in isoform 3).
{ECO:0000303|PubMed:14702039}.
/FTId=VSP_043249.
VAR_SEQ 4 80 Missing (in isoform 4).
{ECO:0000303|PubMed:16344560}.
/FTId=VSP_046273.
VAR_SEQ 14 46 Missing (in isoform 2 and isoform 3).
{ECO:0000303|PubMed:14702039,
ECO:0000303|PubMed:15489334,
ECO:0000303|PubMed:17974005}.
/FTId=VSP_007538.
SEQUENCE 148 AA; 16871 MW; 75943BA57A63AF3D CRC64;
MEVKDANSAL LSNYEVFQLL TDLKEQRKES GKNKHSSGQQ NLNTITYETL KYISKTPCRH
QSPEIVREFL TALKSHKLTK AEKLQLLNHR PVTAVEIQLM VEESEERLTE EQIEALLHTV
TSILPAEPEA EQKKNTNSNV AMDEEDPA


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