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DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha)

 A0A0K0LPZ7_9LILI        Unreviewed;       335 AA.
A0A0K0LPZ7;
11-NOV-2015, integrated into UniProtKB/TrEMBL.
11-NOV-2015, sequence version 1.
25-APR-2018, entry version 14.
RecName: Full=DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};
Short=PEP {ECO:0000256|HAMAP-Rule:MF_00059};
EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};
AltName: Full=Plastid-encoded RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};
Short=RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};
Name=rpoA {ECO:0000256|HAMAP-Rule:MF_00059,
ECO:0000313|EMBL:AJC10737.1};
Lilium sp. KHK-2014.
Plastid; Chloroplast {ECO:0000313|EMBL:AJC10737.1}.
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Liliales; Liliaceae; Lilium.
NCBI_TaxID=1577587 {ECO:0000313|EMBL:AJC10737.1};
[1] {ECO:0000313|EMBL:AJC10737.1}
NUCLEOTIDE SEQUENCE.
Kim K.-H., Lim K.-B., Yang T.-J.;
"High throughput de novo assembly of the complete chloroplast and 45s
nrDNA in plants.";
Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription
of DNA into RNA using the four ribonucleoside triphosphates as
substrates. {ECO:0000256|HAMAP-Rule:MF_00059}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|HAMAP-Rule:MF_00059}.
-!- SUBUNIT: In plastids the minimal PEP RNA polymerase catalytic core
is composed of four subunits: alpha, beta, beta', and beta''. When
a (nuclear-encoded) sigma factor is associated with the core the
holoenzyme is formed, which can initiate transcription.
{ECO:0000256|HAMAP-Rule:MF_00059}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000256|HAMAP-
Rule:MF_00059}.
-!- DOMAIN: The N-terminal domain is essential for RNAP assembly and
basal transcription, whereas the C-terminal domain is involved in
interaction with transcriptional regulators and with upstream
promoter elements. {ECO:0000256|HAMAP-Rule:MF_00059}.
-!- SIMILARITY: Belongs to the RNA polymerase alpha chain family.
{ECO:0000256|HAMAP-Rule:MF_00059}.
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EMBL; KM103383; AJC10737.1; -; Genomic_DNA.
RefSeq; YP_009161488.1; NC_027679.1.
GeneID; 25193534; -.
GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
Gene3D; 2.170.120.12; -; 1.
Gene3D; 3.30.1360.10; -; 2.
HAMAP; MF_00059; RNApol_bact_RpoA; 1.
InterPro; IPR011262; DNA-dir_RNA_pol_insert.
InterPro; IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3.
InterPro; IPR011773; DNA-dir_RpoA.
InterPro; IPR036603; RBP11-like.
InterPro; IPR011260; RNAP_asu_C.
InterPro; IPR036643; RNApol_insert_sf.
PANTHER; PTHR32108; PTHR32108; 1.
Pfam; PF01000; RNA_pol_A_bac; 1.
Pfam; PF03118; RNA_pol_A_CTD; 1.
Pfam; PF01193; RNA_pol_L; 1.
ProDom; PD001179; RNAP_asu_C; 1.
SMART; SM00662; RPOLD; 1.
SUPFAM; SSF55257; SSF55257; 2.
SUPFAM; SSF56553; SSF56553; 1.
TIGRFAMs; TIGR02027; rpoA; 1.
3: Inferred from homology;
Chloroplast {ECO:0000313|EMBL:AJC10737.1};
DNA-directed RNA polymerase {ECO:0000256|HAMAP-Rule:MF_00059};
Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00059};
Plastid {ECO:0000313|EMBL:AJC10737.1};
Transcription {ECO:0000256|HAMAP-Rule:MF_00059};
Transferase {ECO:0000256|HAMAP-Rule:MF_00059}.
DOMAIN 29 232 RPOLD. {ECO:0000259|SMART:SM00662}.
REGION 1 240 Alpha N-terminal domain (alpha-NTD).
{ECO:0000256|HAMAP-Rule:MF_00059}.
REGION 266 335 Alpha C-terminal domain (alpha-CTD).
{ECO:0000256|HAMAP-Rule:MF_00059}.
SEQUENCE 335 AA; 38426 MW; 2F7F31860D195153 CRC64;
MVREGVGGST RTLQWKCVES KIDSKRLYYG RFILSPLMKG QADTIGIAMR RALLGEIEGT
CITRAKSEKV PHEYSTIVGI KESVHEILIN LKEIVLRSTL YGVRDASICV RGPRHVTAQD
IISPPSVEIV DTTQHIANLT EPIDLCIELQ INRDRGYRMK PTNNSQDGSY PIDAIFMPIR
NANHSIHSYG DGNEKQEILF LEIWTNGSLT PKEALYEASR NLIDLFIPFL HAEEEGINFT
ENKNRFTLSP FTFQDRLSNL KKNKKIIPLK FIFIDQLELP SRTYNCLKRS NIHTLLDLLS
NSNSQEDLMR IEYFRIEDVK QILDTLPEAF HNRFT


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