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DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (EC 2.7.7.6) (RNA polymerase subunit beta) (Transcriptase subunit beta)

 RPOB_RICPR              Reviewed;        1374 AA.
O52271; Q9RH37;
15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
01-JUN-1998, sequence version 1.
23-MAY-2018, entry version 109.
RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=RP140;
Rickettsia prowazekii (strain Madrid E).
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
Rickettsiaceae; Rickettsieae; Rickettsia; typhus group.
NCBI_TaxID=272947;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=Madrid E;
PubMed=9555894;
Rachek L.I., Tucker A.M., Winkler H.H., Wood D.O.;
"Transformation of Rickettsia prowazekii to rifampin resistance.";
J. Bacteriol. 180:2118-2124(1998).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Madrid E;
PubMed=9823893; DOI=10.1038/24094;
Andersson S.G.E., Zomorodipour A., Andersson J.O.,
Sicheritz-Ponten T., Alsmark U.C.M., Podowski R.M., Naeslund A.K.,
Eriksson A.-S., Winkler H.H., Kurland C.G.;
"The genome sequence of Rickettsia prowazekii and the origin of
mitochondria.";
Nature 396:133-140(1998).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=ATCC VR-142 / Breinl;
PubMed=10508014;
Drancourt M., Raoult D.;
"Characterization of mutations in the rpoB gene in naturally rifampin-
resistant Rickettsia species.";
Antimicrob. Agents Chemother. 43:2400-2403(1999).
-!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription
of DNA into RNA using the four ribonucleoside triphosphates as
substrates.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000255|HAMAP-Rule:MF_01321}.
-!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1
beta' and 1 omega subunit. When a sigma factor is associated with
the core the holoenzyme is formed, which can initiate
transcription. {ECO:0000255|HAMAP-Rule:MF_01321}.
-!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
{ECO:0000255|HAMAP-Rule:MF_01321}.
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EMBL; AF034531; AAC38354.1; -; Genomic_DNA.
EMBL; AJ235270; CAA14608.1; -; Genomic_DNA.
EMBL; AF076437; AAF22439.1; -; Genomic_DNA.
PIR; A71724; A71724.
RefSeq; NP_220531.1; NC_000963.1.
RefSeq; WP_010886216.1; NC_000963.1.
ProteinModelPortal; O52271; -.
STRING; 272947.RP140; -.
PRIDE; O52271; -.
EnsemblBacteria; CAA14608; CAA14608; CAA14608.
GeneID; 883777; -.
KEGG; rpr:RP140; -.
PATRIC; fig|272947.5.peg.142; -.
eggNOG; ENOG4108IIJ; Bacteria.
eggNOG; COG0085; LUCA.
KO; K03043; -.
OMA; FMTWEGY; -.
BioCyc; RPRO272947:G1GT0-142-MONOMER; -.
Proteomes; UP000002480; Chromosome.
GO; GO:0003677; F:DNA binding; IEA:InterPro.
GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
CDD; cd00653; RNA_pol_B_RPB2; 1.
Gene3D; 2.40.270.10; -; 2.
Gene3D; 2.40.50.150; -; 1.
Gene3D; 3.90.1110.10; -; 2.
HAMAP; MF_01321; RNApol_bact_RpoB; 1.
InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
InterPro; IPR015712; DNA-dir_RNA_pol_su2.
InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
InterPro; IPR010243; RNA_pol_bsu_bac.
InterPro; IPR007121; RNA_pol_bsu_CS.
InterPro; IPR007644; RNA_pol_bsu_protrusion.
InterPro; IPR007642; RNA_pol_Rpb2_2.
InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
InterPro; IPR007645; RNA_pol_Rpb2_3.
InterPro; IPR007641; RNA_pol_Rpb2_7.
InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
PANTHER; PTHR20856; PTHR20856; 1.
Pfam; PF04563; RNA_pol_Rpb2_1; 1.
Pfam; PF04561; RNA_pol_Rpb2_2; 1.
Pfam; PF04565; RNA_pol_Rpb2_3; 1.
Pfam; PF10385; RNA_pol_Rpb2_45; 1.
Pfam; PF00562; RNA_pol_Rpb2_6; 1.
Pfam; PF04560; RNA_pol_Rpb2_7; 1.
TIGRFAMs; TIGR02013; rpoB; 1.
PROSITE; PS01166; RNA_POL_BETA; 1.
3: Inferred from homology;
Antibiotic resistance; Complete proteome; DNA-directed RNA polymerase;
Nucleotidyltransferase; Reference proteome; Transcription;
Transferase.
CHAIN 1 1374 DNA-directed RNA polymerase subunit beta.
/FTId=PRO_0000047950.
VARIANT 10 10 S -> A (in strain: Breinl).
VARIANT 15 15 H -> L (in strain: Breinl).
VARIANT 19 19 I -> L (in strain: Breinl).
VARIANT 96 96 D -> E (in strain: Breinl).
VARIANT 195 195 R -> I (in strain: Breinl).
VARIANT 216 216 K -> R (in strain: Breinl).
VARIANT 256 256 K -> E (in strain: Breinl).
VARIANT 273 273 D -> Y (in strain: Breinl).
VARIANT 282 282 K -> N (in strain: Breinl).
VARIANT 299 299 G -> S (in strain: Breinl).
VARIANT 310 310 L -> F (in strain: Breinl).
VARIANT 546 546 R -> K (in rifampicin resistant mutant).
SEQUENCE 1374 AA; 154583 MW; 384676DFF6584DB4 CRC64;
MVSLRDNIES QPLSHNRRIR KNFGHINLVA DIPNLIEIQK NSYEKNFLQL NIKDSERKNK
GLQSILNSIF PISDSSNIAN LEFVKYEFDT PKYDVDECSQ RSLSYAAPLK VTLRLSIWDI
DEDTGTREIK GIKEQEVYMG DIPLMTKNGT FIINGTERVV VSQMHRSPGV FFYHDEGKVH
SSGKLLYSAR VIPYRGSWLD FEFDAKDIIY FRIDRKRKLY ATTLLRAIGM STEEIIKFYY
NSVTYKFVKN KGWSVKFIPQ HITAHRLTSD LVDADTGNVL LKAGQKITPR LAQKYFGVGL
NNILVTHETL IGKYLSEDLR DPASDEVLAK IGEMITSDML KVINDLKIKN VNVLVINPQS
GSYIRNTLFA DKNQDREAAL CDIFRVLRPG EPANIEAAES LFYNLFFDAE RYDLSEVGRI
KMNSRLELNI SEEVTVLTID DIKNIVRILV ELKDGKGIID DIDHLGNRRV RSVGELIENQ
FRIGLVRMEK SVIERMSAGD VDTVMPHDLV NSKILVSVVK EFFSTSQLSQ FMDQTNPLSE
ITHKRRLSAL GPGGLSRDRA GFEVRDVHPT HYGRICPIET PEGQNIGLIN SMATYARINK
HGFIESPYRR VKNGYVTDEV VYLSAIEEGK YKIGQANSKV DQDGKLQGEF INCRVEGGNF
VMVEPDEVDF IDVTPMQVVS VAASLIPFLE NDDANRALMG SNMQRQAVPL IKTEAPFVGT
GVEGVVAKDS GASVLALHDG IVERVDSNRI VIRTLEQKVD GSPSVDIYNL LKFQKSNHNT
CINQKPLVKV GHYVKKNDII ADGPSTDNGE IALGRNVLVA FLPWNGYNFE DSILISERIV
KEDVFTSIHI EEFEVIARDT RLGPEEITRD IPNVSEEALR HLDEVGIIYV GAEVKAGDIL
VGKVTPKSES PITPEEKLLR AIFGEKAFDV KDSSLHVPSG VSGTVVEVRI FSRRGVEKDQ
RAIAIEKQQI EKLAKDRDDE LEIIEHFVFS WLEKLLVGHV IINGPKQITA GQTITTEMLK
GLSKGQLWQI TVEDANVMNE IEQIKIHYDE KKYALDKRFT TKVEKLQSGD DLPQGALKVV
KVFIATKHKL QPGDKMAGRH GNKGVISRIV PEEDMPFLED GTVVDIVLNP LGLPSRMNIG
QILETHLGWA SINLAKKIST LVKEYKDNHI DIEEIKKFLL ELYGKDINYI LEGSEEEIIS
FCNKVSKGVY FATPVFDGAK VQDVKDMLEL AGQDLSGQVK LIDGRTGEYF DRLVTVGHKY
LLKLHHLVDN KIHSRSIGPY SLVTQQPLGG KSHFGGQRFG EMECWALQAY GAAYTLQEML
TVKSDDVNGR IKTYDSIVRG ENNFESGIPE SFNVMIKEFR SLCLNVKLEV TPSK


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