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Dicer-like 1

 F4HQG6_ARATH            Unreviewed;      1910 AA.
F4HQG6;
28-JUN-2011, integrated into UniProtKB/TrEMBL.
28-JUN-2011, sequence version 1.
20-DEC-2017, entry version 55.
SubName: Full=Dicer-like 1 {ECO:0000313|EMBL:AEE27221.1};
Name=DCL1 {ECO:0000313|EMBL:AEE27221.1};
Synonyms=ABNORMAL SUSPENSOR 1 {ECO:0000313|EMBL:AEE27221.1},
ASU1 {ECO:0000313|EMBL:AEE27221.1},
ATDCL1 {ECO:0000313|EMBL:AEE27221.1},
CAF {ECO:0000313|EMBL:AEE27221.1},
CARPEL FACTORY {ECO:0000313|EMBL:AEE27221.1},
DICER-LIKE 1 {ECO:0000313|EMBL:AEE27221.1},
dicer-like 1 {ECO:0000313|EMBL:AEE27221.1},
EMB60 {ECO:0000313|EMBL:AEE27221.1},
EMB76 {ECO:0000313|EMBL:AEE27221.1},
EMBRYO DEFECTIVE 60 {ECO:0000313|EMBL:AEE27221.1},
EMBRYO DEFECTIVE 76 {ECO:0000313|EMBL:AEE27221.1},
SHORT INTEGUMENTS 1 {ECO:0000313|EMBL:AEE27221.1},
SIN1 {ECO:0000313|EMBL:AEE27221.1},
SUS1 {ECO:0000313|EMBL:AEE27221.1},
SUSPENSOR 1 {ECO:0000313|EMBL:AEE27221.1};
OrderedLocusNames=At1g01040 {ECO:0000313|Araport:AT1G01040,
ECO:0000313|EMBL:AEE27221.1};
ORFNames=T25K16.4 {ECO:0000313|EMBL:AEE27221.1},
T25K16_4 {ECO:0000313|EMBL:AEE27221.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702 {ECO:0000313|EMBL:AEE27221.1, ECO:0000313|Proteomes:UP000006548};
[1] {ECO:0000313|EMBL:AEE27221.1, ECO:0000313|Proteomes:UP000006548}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X.,
Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J.,
Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G.,
Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H.,
Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H.,
Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T.,
Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G.,
Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[2] {ECO:0000313|EMBL:AEE27221.1, ECO:0000313|Proteomes:UP000006548}
GENOME REANNOTATION.
STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
-!- SIMILARITY: Belongs to the helicase family. Dicer subfamily.
{ECO:0000256|PROSITE-ProRule:PRU00657}.
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EMBL; CP002684; AEE27221.1; -; Genomic_DNA.
RefSeq; NP_001184881.1; NM_001197952.1.
UniGene; At.22088; -.
UniGene; At.57123; -.
ProteinModelPortal; F4HQG6; -.
PaxDb; F4HQG6; -.
EnsemblPlants; AT1G01040.2; AT1G01040.2; AT1G01040.
GeneID; 839574; -.
Gramene; AT1G01040.2; AT1G01040.2; AT1G01040.
Araport; AT1G01040; -.
TAIR; locus:2200960; AT1G01040.
eggNOG; KOG0701; Eukaryota.
eggNOG; COG0571; LUCA.
eggNOG; COG1111; LUCA.
OMA; QFMVGRN; -.
OrthoDB; EOG0936003I; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; F4HQG6; baseline and differential.
GO; GO:0010445; C:nuclear dicing body; IDA:TAIR.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0005524; F:ATP binding; IEA:InterPro.
GO; GO:0003677; F:DNA binding; IEA:InterPro.
GO; GO:0003725; F:double-stranded RNA binding; IDA:TAIR.
GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
GO; GO:0000911; P:cytokinesis by cell plate formation; IMP:TAIR.
GO; GO:0009880; P:embryonic pattern specification; IMP:TAIR.
GO; GO:0009908; P:flower development; TAS:TAIR.
GO; GO:0035279; P:mRNA cleavage involved in gene silencing by miRNA; IMP:TAIR.
GO; GO:0031053; P:primary miRNA processing; TAS:TAIR.
GO; GO:0010599; P:production of lsiRNA involved in RNA interference; IMP:TAIR.
GO; GO:0010267; P:production of ta-siRNAs involved in RNA interference; IMP:TAIR.
GO; GO:2000034; P:regulation of seed maturation; IMP:TAIR.
GO; GO:0006396; P:RNA processing; ISS:TAIR.
GO; GO:0016075; P:rRNA catabolic process; IEA:InterPro.
GO; GO:0048317; P:seed morphogenesis; IMP:TAIR.
GO; GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR.
GO; GO:0009616; P:virus induced gene silencing; IMP:TAIR.
CDD; cd00079; HELICc; 1.
CDD; cd00593; RIBOc; 2.
Gene3D; 1.10.1520.10; -; 2.
HAMAP; MF_00104; RNase_III; 1.
InterPro; IPR005034; Dicer_dimerisation_dom.
InterPro; IPR014720; dsRBD_dom.
InterPro; IPR006935; Helicase/UvrB_N.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR001650; Helicase_C.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR003100; PAZ_dom.
InterPro; IPR036085; PAZ_dom_sf.
InterPro; IPR011907; RNase_III.
InterPro; IPR000999; RNase_III_dom.
InterPro; IPR036389; RNase_III_sf.
Pfam; PF03368; Dicer_dimer; 1.
Pfam; PF00271; Helicase_C; 1.
Pfam; PF02170; PAZ; 1.
Pfam; PF04851; ResIII; 1.
Pfam; PF00636; Ribonuclease_3; 2.
SMART; SM00487; DEXDc; 1.
SMART; SM00358; DSRM; 2.
SMART; SM00490; HELICc; 1.
SMART; SM00949; PAZ; 1.
SMART; SM00535; RIBOc; 2.
SUPFAM; SSF101690; SSF101690; 1.
SUPFAM; SSF52540; SSF52540; 2.
SUPFAM; SSF69065; SSF69065; 4.
PROSITE; PS51327; DICER_DSRBF; 1.
PROSITE; PS50137; DS_RBD; 2.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
PROSITE; PS51194; HELICASE_CTER; 1.
PROSITE; PS50821; PAZ; 1.
PROSITE; PS00517; RNASE_3_1; 1.
PROSITE; PS50142; RNASE_3_2; 2.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000006548};
Reference proteome {ECO:0000313|Proteomes:UP000006548};
RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00657};
RNA-mediated gene silencing {ECO:0000256|SAAS:SAAS00703041}.
DOMAIN 256 433 Helicase ATP-binding.
{ECO:0000259|PROSITE:PS51192}.
DOMAIN 651 812 Helicase C-terminal.
{ECO:0000259|PROSITE:PS51194}.
DOMAIN 840 935 Dicer dsRNA-binding fold.
{ECO:0000259|PROSITE:PS51327}.
DOMAIN 1181 1319 PAZ. {ECO:0000259|PROSITE:PS50821}.
DOMAIN 1362 1519 RNase III. {ECO:0000259|PROSITE:PS50142}.
DOMAIN 1560 1708 RNase III. {ECO:0000259|PROSITE:PS50142}.
DOMAIN 1734 1797 DRBM. {ECO:0000259|PROSITE:PS50137}.
DOMAIN 1832 1907 DRBM. {ECO:0000259|PROSITE:PS50137}.
SEQUENCE 1910 AA; 213673 MW; C4B835B690A6AD0F CRC64;
MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI
DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV KENGLQKNGG KRDEFSKEEG
DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR
DGRDREVRGY WERDKVGSNE LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER
KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN
ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT PKDKRPAIFG MTASPVNLKG
VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ
MIAAVEEAAQ ASSRKSKWQF MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT
LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ
HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG HNNSQEMKSS QMQDTISKFR
DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV
SHAAFLRNAR NSEETLRKEA IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA
VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG
VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD PFLSEVSEFA ILFGNELDAE
VVLSMSMDLY VARAMITKAS LAFKGSLDIT ENQLSSLKKF HVRLMSIVLD VDVEPSTTPW
DPAKAYLFVP VTDNTSMEPI KGINWELVEK ITKTTAWDNP LQRARPDVYL GTNERTLGGD
RREYGFGKLR HNIVFGQKSH PTYGIRGAVA SFDVVRASGL LPVRDAFEKE VEEDLSKGKL
MMADGCMVAE DLIGKIVTAA HSGKRFYVDS ICYDMSAETS FPRKEGYLGP LEYNTYADYY
KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET VLDKTYYVFL PPELCVVHPL
SGSLIRGAQR LPSIMRRVES MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL
LGDAYLKWVV SRFLFLKYPQ KHEGQLTRMR QQMVSNMVLY QFALVKGLQS YIQADRFAPS
RWSAPGVPPV FDEDTKDGGS SFFDEEQKPV SEENSDVFED GEMEDGELEG DLSSYRVLSS
KTLADVVEAL IGVYYVEGGK IAANHLMKWI GIHVEDDPDE VDGTLKNVNV PESVLKSIDF
VGLERALKYE FKEKGLLVEA ITHASRPSSG VSCYQRLEFV GDAVLDHLIT RHLFFTYTSL
PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK QIREFVKEVQ TESSKPGFNS
FGLGDCKAPK VLGDIVESIA GAIFLDSGKD TTAAWKVFQP LLQPMVTPET LPMHPVRELQ
ERCQQQAEGL EYKASRSGNT ATVEVFIDGV QVGVAQNPQK KMAQKLAARN ALAALKEKEI
AESKEKHINN GNAGEDQGEN ENGNKKNGHQ PFTRQTLNDI CLRKNWPMPS YRCVKEGGPA
HAKRFTFGVR VNTSDRGWTD ECIGEPMPSV KKAKDSAAVL LLELLNKTFS


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