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E3 ubiquitin-protein ligase SHPRH

 K4DI94_HUMAN            Unreviewed;       660 AA.
K4DI94;
28-NOV-2012, integrated into UniProtKB/TrEMBL.
29-OCT-2014, sequence version 2.
12-SEP-2018, entry version 60.
SubName: Full=E3 ubiquitin-protein ligase SHPRH {ECO:0000313|Ensembl:ENSP00000356473};
Name=SHPRH {ECO:0000313|Ensembl:ENSP00000356473};
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606 {ECO:0000313|Ensembl:ENSP00000356473, ECO:0000313|Proteomes:UP000005640};
[1] {ECO:0000313|Ensembl:ENSP00000356473, ECO:0000313|Proteomes:UP000005640}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=14574404; DOI=10.1038/nature02055;
Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L.,
Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E.,
Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R.,
Almeida J.P., Ambrose K.D., Andrews T.D., Ashwell R.I.S.,
Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J.,
Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P.,
Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y.,
Burford D.C., Burrill W., Burton J., Carder C., Carter N.P.,
Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V.,
Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J.,
Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E.,
Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A.,
Frankland J., French L., Garner P., Garnett J., Ghori M.J.,
Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M.,
Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S.,
Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R.,
Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E.,
Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A.,
Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C.,
Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M.,
Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M.,
Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K.,
McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T.,
Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R.,
Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W.,
Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M.,
Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L.,
Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J.,
Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B.,
Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L.,
Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W.,
Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A.,
Durbin R., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.;
"The DNA sequence and analysis of human chromosome 6.";
Nature 425:805-811(2003).
[2] {ECO:0000213|PubMed:21269460}
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21269460; DOI=10.1186/1752-0509-5-17;
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P.,
Burckstummer T., Bennett K.L., Superti-Furga G., Colinge J.;
"Initial characterization of the human central proteome.";
BMC Syst. Biol. 5:17-17(2011).
[3] {ECO:0000213|PubMed:21406692}
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21406692; DOI=10.1126/scisignal.2001570;
Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J.,
Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V.,
Blagoev B.;
"System-wide temporal characterization of the proteome and
phosphoproteome of human embryonic stem cell differentiation.";
Sci. Signal. 4:rs3-RS3(2011).
[4] {ECO:0000313|Ensembl:ENSP00000356473}
IDENTIFICATION.
Ensembl;
Submitted (OCT-2012) to UniProtKB.
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EMBL; AL356599; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AL451145; -; NOT_ANNOTATED_CDS; Genomic_DNA.
ProteinModelPortal; K4DI94; -.
MaxQB; K4DI94; -.
PeptideAtlas; K4DI94; -.
PRIDE; K4DI94; -.
Ensembl; ENST00000367503; ENSP00000356473; ENSG00000146414.
UCSC; uc063sbt.1; human.
EuPathDB; HostDB:ENSG00000146414.15; -.
HGNC; HGNC:19336; SHPRH.
OpenTargets; ENSG00000146414; -.
eggNOG; KOG0298; Eukaryota.
eggNOG; COG0553; LUCA.
GeneTree; ENSGT00730000111123; -.
ChiTaRS; SHPRH; human.
Proteomes; UP000005640; Chromosome 6.
Bgee; ENSG00000146414; Expressed in 194 organ(s), highest expression level in corpus callosum.
ExpressionAtlas; K4DI94; baseline and differential.
GO; GO:0000786; C:nucleosome; IEA:InterPro.
GO; GO:0005634; C:nucleus; IEA:InterPro.
GO; GO:0005524; F:ATP binding; IEA:InterPro.
GO; GO:0003677; F:DNA binding; IEA:InterPro.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0006334; P:nucleosome assembly; IEA:InterPro.
CDD; cd00073; H15; 1.
Gene3D; 1.10.10.10; -; 1.
Gene3D; 3.30.40.10; -; 1.
InterPro; IPR005818; Histone_H1/H5_H15.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000330; SNF2_N.
InterPro; IPR036388; WH-like_DNA-bd_sf.
InterPro; IPR036390; WH_DNA-bd_sf.
InterPro; IPR019786; Zinc_finger_PHD-type_CS.
InterPro; IPR011011; Znf_FYVE_PHD.
InterPro; IPR001965; Znf_PHD.
InterPro; IPR019787; Znf_PHD-finger.
InterPro; IPR013083; Znf_RING/FYVE/PHD.
Pfam; PF00538; Linker_histone; 1.
Pfam; PF00628; PHD; 1.
Pfam; PF00176; SNF2_N; 1.
SMART; SM00526; H15; 1.
SMART; SM00249; PHD; 1.
SUPFAM; SSF46785; SSF46785; 1.
SUPFAM; SSF52540; SSF52540; 2.
SUPFAM; SSF57903; SSF57903; 1.
PROSITE; PS51504; H15; 1.
PROSITE; PS01359; ZF_PHD_1; 1.
1: Evidence at protein level;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000005640};
Metal-binding {ECO:0000256|SAAS:SAAS01007077};
Proteomics identification {ECO:0000213|EPD:K4DI94,
ECO:0000213|MaxQB:K4DI94, ECO:0000213|PeptideAtlas:K4DI94};
Reference proteome {ECO:0000313|Proteomes:UP000005640};
Zinc {ECO:0000256|SAAS:SAAS01007077};
Zinc-finger {ECO:0000256|SAAS:SAAS01007077}.
DOMAIN 327 401 H15. {ECO:0000259|PROSITE:PS51504}.
COILED 116 136 {ECO:0000256|SAM:Coils}.
SEQUENCE 660 AA; 75991 MW; 3EDFEF2C1960C45C CRC64;
MSSRRKRAPP VRVDEEKRQQ LHWNMHEDRR NEPIIISDDD EQPCPGEDVE KQKKEPMSIC
DKGILVESSF SGEMLEDLGW LQKKRRIKLY QKPEGNHIIK VGIYLLEAGL AKLDFLSDAN
SRMKKFNQLM KKVMEKLHNS IIPDVLEEDE DDPESEPEGQ DIDELYHFVK QTHQQETQSI
QVDVQHPALI PVLRPYQREA VNWMLQQECF RSSPATESAL HFLWREIVTS EGLKLYYNPY
TGCIIREYPN SGPQLLGGIL ADEMGLGKTV EVLALILTHT RQDVKQDALT LPEGKVVNYF
IPSHYFGGKL KKTEIQNIEF EPKEKVQCPP TRVMILTAVK EMNGKKGVSI LSIYKYVSSI
YRYDVQRNRS LLKRMLKCLI FEGLVKQIKG HGFSGTFTLG KNYKEEDICD KTKKQAVGSP
RKIQKETRKS GNKDTDSEYL PSDTSDDDDD PYYYYYKSRR NRSKLRKKLV PSTKKGKSQP
FINPDSQGHC PATSDSGITD VAMSKSTCIS EFNQEHETED CAESLNHADS DVPPSNTMSP
FNTSDYRFEC ICGELDQIDR KPRVQCLKCH LWQHAKCVNY DEKNLKIKPF YCPHCLVAME
PVSTRATLII SPSSICHQWV DEINRHVRSS SLRVLVYQGV KKDGFLQPHF GRTGYSYHYL


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