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E3 ubiquitin-protein ligase parkin (EC 2.3.2.-)

 F6U1L3_MACMU            Unreviewed;       465 AA.
F6U1L3;
27-JUL-2011, integrated into UniProtKB/TrEMBL.
30-NOV-2016, sequence version 2.
23-MAY-2018, entry version 56.
RecName: Full=E3 ubiquitin-protein ligase parkin {ECO:0000256|PIRNR:PIRNR037880};
EC=2.3.2.- {ECO:0000256|PIRNR:PIRNR037880};
Name=PRKN {ECO:0000313|Ensembl:ENSMMUP00000026859};
Macaca mulatta (Rhesus macaque).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
NCBI_TaxID=9544 {ECO:0000313|Ensembl:ENSMMUP00000026859, ECO:0000313|Proteomes:UP000006718};
[1] {ECO:0000313|Ensembl:ENSMMUP00000026859, ECO:0000313|Proteomes:UP000006718}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=17573 {ECO:0000313|Ensembl:ENSMMUP00000026859,
ECO:0000313|Proteomes:UP000006718};
PubMed=17431167; DOI=10.1126/science.1139247;
Gibbs R.A., Rogers J., Katze M.G., Bumgarner R., Weinstock G.M.,
Mardis E.R., Remington K.A., Strausberg R.L., Venter J.C.,
Wilson R.K., Batzer M.A., Bustamante C.D., Eichler E.E., Hahn M.W.,
Hardison R.C., Makova K.D., Miller W., Milosavljevic A., Palermo R.E.,
Siepel A., Sikela J.M., Attaway T., Bell S., Bernard K.E., Buhay C.J.,
Chandrabose M.N., Dao M., Davis C., Delehaunty K.D., Ding Y.,
Dinh H.H., Dugan-Rocha S., Fulton L.A., Gabisi R.A., Garner T.T.,
Godfrey J., Hawes A.C., Hernandez J., Hines S., Holder M., Hume J.,
Jhangiani S.N., Joshi V., Khan Z.M., Kirkness E.F., Cree A.,
Fowler R.G., Lee S., Lewis L.R., Li Z., Liu Y.-S., Moore S.M.,
Muzny D., Nazareth L.V., Ngo D.N., Okwuonu G.O., Pai G., Parker D.,
Paul H.A., Pfannkoch C., Pohl C.S., Rogers Y.-H.C., Ruiz S.J.,
Sabo A., Santibanez J., Schneider B.W., Smith S.M., Sodergren E.,
Svatek A.F., Utterback T.R., Vattathil S., Warren W., White C.S.,
Chinwalla A.T., Feng Y., Halpern A.L., Hillier L.W., Huang X.,
Minx P., Nelson J.O., Pepin K.H., Qin X., Sutton G.G., Venter E.,
Walenz B.P., Wallis J.W., Worley K.C., Yang S.-P., Jones S.M.,
Marra M.A., Rocchi M., Schein J.E., Baertsch R., Clarke L., Csuros M.,
Glasscock J., Harris R.A., Havlak P., Jackson A.R., Jiang H., Liu Y.,
Messina D.N., Shen Y., Song H.X.-Z., Wylie T., Zhang L., Birney E.,
Han K., Konkel M.K., Lee J., Smit A.F.A., Ullmer B., Wang H., Xing J.,
Burhans R., Cheng Z., Karro J.E., Ma J., Raney B., She X., Cox M.J.,
Demuth J.P., Dumas L.J., Han S.-G., Hopkins J., Karimpour-Fard A.,
Kim Y.H., Pollack J.R., Vinar T., Addo-Quaye C., Degenhardt J.,
Denby A., Hubisz M.J., Indap A., Kosiol C., Lahn B.T., Lawson H.A.,
Marklein A., Nielsen R., Vallender E.J., Clark A.G., Ferguson B.,
Hernandez R.D., Hirani K., Kehrer-Sawatzki H., Kolb J., Patil S.,
Pu L.-L., Ren Y., Smith D.G., Wheeler D.A., Schenck I., Ball E.V.,
Chen R., Cooper D.N., Giardine B., Hsu F., Kent W.J., Lesk A.,
Nelson D.L., O'brien W.E., Pruefer K., Stenson P.D., Wallace J.C.,
Ke H., Liu X.-M., Wang P., Xiang A.P., Yang F., Barber G.P.,
Haussler D., Karolchik D., Kern A.D., Kuhn R.M., Smith K.E.,
Zwieg A.S.;
"Evolutionary and biomedical insights from the rhesus macaque
genome.";
Science 316:222-234(2007).
[2] {ECO:0000313|Ensembl:ENSMMUP00000026859}
IDENTIFICATION.
STRAIN=17573 {ECO:0000313|Ensembl:ENSMMUP00000026859};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
-!- FUNCTION: Functions within a multiprotein E3 ubiquitin ligase
complex, catalyzing the covalent attachment of ubiquitin moieties
onto substrate proteins. {ECO:0000256|PIRNR:PIRNR037880}.
-!- CATALYTIC ACTIVITY: [E2 ubiquitin-conjugating enzyme]-S-
ubiquitinyl-L-cysteine + [acceptor protein]-L-lysine = [E2
ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-
N(6)-ubiquitinyl-L-lysine. {ECO:0000256|SAAS:SAAS01037472}.
-!- PATHWAY: Protein modification; protein ubiquitination.
{ECO:0000256|PIRNR:PIRNR037880}.
-!- SUBUNIT: Forms an E3 ubiquitin ligase complex with UBE2L3 or
UBE2L6. {ECO:0000256|PIRNR:PIRNR037880}.
-!- SIMILARITY: Belongs to the RBR family. Parkin subfamily.
{ECO:0000256|PIRNR:PIRNR037880}.
-----------------------------------------------------------------------
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EMBL; JSUE03032562; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03032563; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03032564; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03032565; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03032566; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03032567; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03032568; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03032569; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03032570; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03032571; -; NOT_ANNOTATED_CDS; Genomic_DNA.
RefSeq; XP_014992816.1; XM_015137330.1.
UniGene; Mmu.23669; -.
ProteinModelPortal; F6U1L3; -.
STRING; 9544.ENSMMUP00000026859; -.
Ensembl; ENSMMUT00000028706; ENSMMUP00000026859; ENSMMUG00000020410.
GeneID; 710899; -.
KEGG; mcc:710899; -.
CTD; 5071; -.
eggNOG; KOG0006; Eukaryota.
eggNOG; ENOG410YG4B; LUCA.
GeneTree; ENSGT00390000011034; -.
InParanoid; F6U1L3; -.
KO; K04556; -.
OrthoDB; EOG091G09PU; -.
TreeFam; TF314529; -.
UniPathway; UPA00143; -.
Proteomes; UP000006718; Chromosome 4.
Bgee; ENSMMUG00000020410; -.
ExpressionAtlas; F6U1L3; baseline.
GO; GO:0016235; C:aggresome; IEA:Ensembl.
GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
GO; GO:0005829; C:cytosol; IEA:Ensembl.
GO; GO:0005783; C:endoplasmic reticulum; IEA:Ensembl.
GO; GO:0005794; C:Golgi apparatus; IEA:Ensembl.
GO; GO:0071797; C:LUBAC complex; IEA:Ensembl.
GO; GO:0005739; C:mitochondrion; IEA:Ensembl.
GO; GO:0099073; C:mitochondrion-derived vesicle; IEA:Ensembl.
GO; GO:0043005; C:neuron projection; IEA:Ensembl.
GO; GO:0016607; C:nuclear speck; IEA:Ensembl.
GO; GO:1990452; C:Parkin-FBXW7-Cul1 ubiquitin ligase complex; IEA:Ensembl.
GO; GO:0048471; C:perinuclear region of cytoplasm; IEA:Ensembl.
GO; GO:0098793; C:presynapse; IEA:GOC.
GO; GO:0000151; C:ubiquitin ligase complex; IBA:GO_Central.
GO; GO:0003779; F:actin binding; IEA:Ensembl.
GO; GO:0008013; F:beta-catenin binding; IEA:Ensembl.
GO; GO:0051087; F:chaperone binding; IEA:Ensembl.
GO; GO:0097602; F:cullin family protein binding; IEA:Ensembl.
GO; GO:1990444; F:F-box domain binding; IEA:Ensembl.
GO; GO:0001664; F:G-protein coupled receptor binding; IEA:Ensembl.
GO; GO:0042826; F:histone deacetylase binding; IEA:Ensembl.
GO; GO:0030544; F:Hsp70 protein binding; IEA:Ensembl.
GO; GO:0042802; F:identical protein binding; IEA:Ensembl.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0030165; F:PDZ domain binding; IEA:Ensembl.
GO; GO:0043274; F:phospholipase binding; IEA:Ensembl.
GO; GO:0019901; F:protein kinase binding; IEA:Ensembl.
GO; GO:0000976; F:transcription regulatory region sequence-specific DNA binding; IEA:Ensembl.
GO; GO:0015631; F:tubulin binding; IEA:Ensembl.
GO; GO:0043130; F:ubiquitin binding; IEA:Ensembl.
GO; GO:0031624; F:ubiquitin conjugating enzyme binding; IBA:GO_Central.
GO; GO:0061630; F:ubiquitin protein ligase activity; IBA:GO_Central.
GO; GO:0031625; F:ubiquitin protein ligase binding; IEA:Ensembl.
GO; GO:1990381; F:ubiquitin-specific protease binding; IEA:Ensembl.
GO; GO:0008344; P:adult locomotory behavior; IEA:Ensembl.
GO; GO:0070842; P:aggresome assembly; IEA:Ensembl.
GO; GO:0097237; P:cellular response to toxic substance; IEA:Ensembl.
GO; GO:0042417; P:dopamine metabolic process; IEA:Ensembl.
GO; GO:0051583; P:dopamine uptake involved in synaptic transmission; IEA:Ensembl.
GO; GO:0010994; P:free ubiquitin chain polymerization; IEA:Ensembl.
GO; GO:0007612; P:learning; IEA:Ensembl.
GO; GO:0099074; P:mitochondrion to lysosome transport; IEA:Ensembl.
GO; GO:0000423; P:mitophagy; IEA:Ensembl.
GO; GO:0044828; P:negative regulation by host of viral genome replication; IEA:Ensembl.
GO; GO:0032232; P:negative regulation of actin filament bundle assembly; IEA:Ensembl.
GO; GO:0090090; P:negative regulation of canonical Wnt signaling pathway; IEA:Ensembl.
GO; GO:1903382; P:negative regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway; IEA:Ensembl.
GO; GO:1903542; P:negative regulation of exosomal secretion; IEA:Ensembl.
GO; GO:0033132; P:negative regulation of glucokinase activity; IEA:Ensembl.
GO; GO:0046676; P:negative regulation of insulin secretion; IEA:Ensembl.
GO; GO:1905366; P:negative regulation of intralumenal vesicle formation; IEA:Ensembl.
GO; GO:1902254; P:negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; IEA:Ensembl.
GO; GO:1903377; P:negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway; IEA:Ensembl.
GO; GO:1902283; P:negative regulation of primary amine oxidase activity; IEA:Ensembl.
GO; GO:0001933; P:negative regulation of protein phosphorylation; IEA:Ensembl.
GO; GO:2000378; P:negative regulation of reactive oxygen species metabolic process; IEA:Ensembl.
GO; GO:0090201; P:negative regulation of release of cytochrome c from mitochondria; IEA:Ensembl.
GO; GO:1904049; P:negative regulation of spontaneous neurotransmitter secretion; IEA:Ensembl.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IEA:Ensembl.
GO; GO:0042415; P:norepinephrine metabolic process; IEA:Ensembl.
GO; GO:0061734; P:parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization; IEA:Ensembl.
GO; GO:1903861; P:positive regulation of dendrite extension; IEA:Ensembl.
GO; GO:0043388; P:positive regulation of DNA binding; IEA:Ensembl.
GO; GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB signaling; IEA:Ensembl.
GO; GO:0010636; P:positive regulation of mitochondrial fusion; IEA:Ensembl.
GO; GO:0051582; P:positive regulation of neurotransmitter uptake; IEA:Ensembl.
GO; GO:0032436; P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process; IBA:GO_Central.
GO; GO:0032092; P:positive regulation of protein binding; IEA:Ensembl.
GO; GO:1902530; P:positive regulation of protein linear polyubiquitination; IEA:Ensembl.
GO; GO:1905477; P:positive regulation of protein localization to membrane; IEA:Ensembl.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:Ensembl.
GO; GO:1903265; P:positive regulation of tumor necrosis factor-mediated signaling pathway; IEA:Ensembl.
GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IEA:Ensembl.
GO; GO:0051865; P:protein autoubiquitination; IEA:Ensembl.
GO; GO:0031648; P:protein destabilization; IEA:Ensembl.
GO; GO:0070979; P:protein K11-linked ubiquitination; IEA:Ensembl.
GO; GO:0070936; P:protein K48-linked ubiquitination; IEA:Ensembl.
GO; GO:0085020; P:protein K6-linked ubiquitination; IEA:Ensembl.
GO; GO:0070534; P:protein K63-linked ubiquitination; IEA:Ensembl.
GO; GO:0070585; P:protein localization to mitochondrion; IEA:Ensembl.
GO; GO:0006513; P:protein monoubiquitination; IEA:Ensembl.
GO; GO:0000209; P:protein polyubiquitination; IBA:GO_Central.
GO; GO:0050821; P:protein stabilization; IEA:Ensembl.
GO; GO:0042053; P:regulation of dopamine metabolic process; IEA:Ensembl.
GO; GO:0051881; P:regulation of mitochondrial membrane potential; IEA:Ensembl.
GO; GO:0034976; P:response to endoplasmic reticulum stress; IEA:Ensembl.
GO; GO:0001964; P:startle response; IEA:Ensembl.
GO; GO:0035249; P:synaptic transmission, glutamatergic; IEA:Ensembl.
InterPro; IPR031127; E3_UB_ligase_RBR.
InterPro; IPR002867; IBR_dom.
InterPro; IPR003977; Parkin.
InterPro; IPR029071; Ubiquitin-like_domsf.
InterPro; IPR000626; Ubiquitin_dom.
PANTHER; PTHR11685; PTHR11685; 1.
Pfam; PF01485; IBR; 2.
Pfam; PF00240; ubiquitin; 1.
PIRSF; PIRSF037880; Parkin; 1.
PRINTS; PR01475; PARKIN.
SMART; SM00647; IBR; 2.
SMART; SM00213; UBQ; 1.
SUPFAM; SSF54236; SSF54236; 1.
PROSITE; PS50053; UBIQUITIN_2; 1.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000006718};
Metal-binding {ECO:0000256|SAAS:SAAS00468068};
Nucleus {ECO:0000256|PIRNR:PIRNR037880};
Reference proteome {ECO:0000313|Proteomes:UP000006718};
Transferase {ECO:0000256|SAAS:SAAS00692250};
Ubl conjugation pathway {ECO:0000256|PIRNR:PIRNR037880};
Zinc {ECO:0000256|SAAS:SAAS00468068};
Zinc-finger {ECO:0000256|SAAS:SAAS00468068}.
DOMAIN 1 76 Ubiquitin-like.
{ECO:0000259|PROSITE:PS50053}.
ACT_SITE 431 431 {ECO:0000256|PIRSR:PIRSR037880-1}.
SEQUENCE 465 AA; 51774 MW; BDE26ECDAEB380AA CRC64;
MIVFVRFNSS HGFPVEVDSD TSIFQLKEVV AKRQGVPTDQ LRVIFAGKEL RNDWTVQNCD
LDQQSIVHIV QRPRRKGQEM NATGGDNARN TAGGCEREPQ SLTRVDLSSS VLPGDSVGLA
VILHTDSRND SPPAGSPADR PIYNSFYVYC KGPCQRVQPG KLRVQCSTCR QATLTLTQGP
SCWDDVLIPN RMSGECQSPH CPGTTAEFFF KCGAHPTSDK ETSVALHLIA TNSRNITCIT
CTDVRSPVLV FQCNSRHVIC LDCFHLYCVT RLNDRQFVHD PQLGYSLPCV AGCPNSLIKE
LHHFRILGEE QYNRYQQYGA EECVLQMGGV LCPRPGCGAG LLPESDQRKV TCEGGNGLGC
GFAFCRECKE AYHEGECSAL FEASGTTTQA YRVDERAAEQ ARWEEASKET IKKTTKPCPR
CHVPVEKNGG CMHMKCPQPQ CRLEWCWNCG CEWNRVCMGD HWFDV


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