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Elongin BC and Polycomb repressive complex 2-associated protein (Embryonic stem cell-specific PRC2 subunit p48) (ES cell-specific PRC2 subunit p48) (esPRC2p48)

 EPOP_MOUSE              Reviewed;         369 AA.
Q7TNS8; Q8BN79; Q99JK6;
29-APR-2008, integrated into UniProtKB/Swiss-Prot.
01-OCT-2003, sequence version 1.
28-MAR-2018, entry version 79.
RecName: Full=Elongin BC and Polycomb repressive complex 2-associated protein {ECO:0000303|PubMed:27863225, ECO:0000303|PubMed:27863226};
AltName: Full=Embryonic stem cell-specific PRC2 subunit p48 {ECO:0000303|PubMed:21732481};
Short=ES cell-specific PRC2 subunit p48 {ECO:0000303|PubMed:21732481};
Short=esPRC2p48 {ECO:0000303|PubMed:21732481};
Name=Epop {ECO:0000303|PubMed:27863225, ECO:0000303|PubMed:27863226,
ECO:0000312|MGI:MGI:2143991};
Synonyms=E13 {ECO:0000303|PubMed:23180766};
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Eye;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=C57BL/6J;
PubMed=19468303; DOI=10.1371/journal.pbio.1000112;
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S.,
She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W.,
Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T.,
Zhou S., Teague B., Potamousis K., Churas C., Place M., Herschleb J.,
Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z.,
Lindblad-Toh K., Eichler E.E., Ponting C.P.;
"Lineage-specific biology revealed by a finished genome assembly of
the mouse.";
PLoS Biol. 7:E1000112-E1000112(2009).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J, and Czech II; TISSUE=Brain, and Mammary tumor;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
INTERACTION WITH THE PRC2/EED-EZH2 COMPLEX, AND DEVELOPMENTAL STAGE.
PubMed=21732481; DOI=10.1002/stem.578;
Zhang Z., Jones A., Sun C.W., Li C., Chang C.W., Joo H.Y., Dai Q.,
Mysliwiec M.R., Wu L.C., Guo Y., Yang W., Liu K., Pawlik K.M.,
Erdjument-Bromage H., Tempst P., Lee Y., Min J., Townes T.M., Wang H.;
"PRC2 complexes with JARID2, MTF2, and esPRC2p48 in ES cells to
modulate ES cell pluripotency and somatic cell reprogramming.";
Stem Cells 29:229-240(2011).
[5]
TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND FUNCTION.
PubMed=23180766; DOI=10.1093/nar/gks1136;
De Cegli R., Iacobacci S., Flore G., Gambardella G., Mao L.,
Cutillo L., Lauria M., Klose J., Illingworth E., Banfi S.,
di Bernardo D.;
"Reverse engineering a mouse embryonic stem cell-specific
transcriptional network reveals a new modulator of neuronal
differentiation.";
Nucleic Acids Res. 41:711-726(2013).
[6]
INTERACTION WITH THE PRC2/EED-EZH2 COMPLEX, TISSUE SPECIFICITY, AND
DEVELOPMENTAL STAGE.
PubMed=27462409; DOI=10.1038/celldisc.2015.8;
Liefke R., Shi Y.;
"The PRC2-associated factor C17orf96 is a novel CpG island regulator
in mouse ES cells.";
Cell Discov. 1:15008-15008(2015).
[7]
FUNCTION, SUBCELLULAR LOCATION, DEVELOPMENTAL STAGE, INTERACTION WITH
THE PRC2/EED-EZH2 COMPLEX, INTERACTION WITH THE ELONGIN BC COMPLEX,
AND MUTAGENESIS OF LEU-40.
PubMed=27863225; DOI=10.1016/j.molcel.2016.10.018;
Beringer M., Pisano P., Di Carlo V., Blanco E., Chammas P., Vizan P.,
Gutierrez A., Aranda S., Payer B., Wierer M., Di Croce L.;
"EPOP functionally links elongin and Polycomb in pluripotent stem
cells.";
Mol. Cell 64:645-658(2016).
[8]
FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INTERACTION WITH
THE PRC2/EED-EZH2 COMPLEX, INTERACTION WITH THE ELONGIN BC COMPLEX,
INTERACTION WITH USP7, AND MUTAGENESIS OF LEU-40.
PubMed=27863226; DOI=10.1016/j.molcel.2016.10.019;
Liefke R., Karwacki-Neisius V., Shi Y.;
"EPOP interacts with elongin BC and USP7 to modulate the chromatin
landscape.";
Mol. Cell 64:659-672(2016).
-!- FUNCTION: Scaffold protein that serves as a bridging partner
between the PRC2/EED-EZH2 complex and the elongin BC complex:
required to fine-tune the transcriptional status of Polycomb group
(PcG) target genes in embryonic stem cells (ESCs)
(PubMed:27863225, PubMed:27863226). Plays a key role in genomic
regions that display both active and repressive chromatin
properties in pluripotent stem cells by sustaining low level
expression at PcG target genes: acts by recruiting the elongin BC
complex, thereby restricting excessive activity of the PRC2/EED-
EZH2 complex (PubMed:27863225, PubMed:27863226). Interaction with
USP7 promotes deubiquitination of H2B at promoter sites
(PubMed:27863226). Acts as a regulator of neuronal differentiation
(PubMed:23180766). {ECO:0000269|PubMed:23180766,
ECO:0000269|PubMed:27863225, ECO:0000269|PubMed:27863226}.
-!- SUBUNIT: Associates with the PRC2/EED-EZH2 complex
(PubMed:21732481, PubMed:27462409, PubMed:27863225,
PubMed:27863226). Associates with the elongin BC complex
(PubMed:27863225, PubMed:27863226). Interacts with USP7
(PubMed:27863226). {ECO:0000269|PubMed:21732481,
ECO:0000269|PubMed:27462409, ECO:0000269|PubMed:27863225,
ECO:0000269|PubMed:27863226}.
-!- INTERACTION:
Q921E6:Eed; NbExp=2; IntAct=EBI-16024836, EBI-904301;
Q9D902:Gtf2e2; NbExp=2; IntAct=EBI-16024836, EBI-309435;
Q80U70:Suz12; NbExp=2; IntAct=EBI-16024836, EBI-2526494;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:27863225}.
Chromosome {ECO:0000269|PubMed:27863225,
ECO:0000269|PubMed:27863226}. Note=Localizes at both PRC2/EED-EZH2
sites (H3K27me3) and broad H3K4me3 sites on chromatin of embryonic
stem cells (ESCs) (PubMed:27863226).
{ECO:0000269|PubMed:27863226}.
-!- TISSUE SPECIFICITY: Highly expressed in embryonic stem cells
(ESCs) during embryogenesis and in the adult brain
(PubMed:23180766). {ECO:0000269|PubMed:23180766}.
-!- DEVELOPMENTAL STAGE: Highly expressed in embryonic stem cells
(ESCs) during embryogenesis: expression starts from 4-cell stage.
{ECO:0000269|PubMed:21732481, ECO:0000269|PubMed:23180766,
ECO:0000269|PubMed:27462409, ECO:0000269|PubMed:27863225}.
-!- DOMAIN: The BC-box, which mediates binding to the elongin BC
complex. {ECO:0000269|PubMed:27863225,
ECO:0000269|PubMed:27863226}.
-!- SEQUENCE CAUTION:
Sequence=AAH06054.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; AK087411; BAC39864.1; -; mRNA.
EMBL; AL596123; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC006054; AAH06054.1; ALT_INIT; mRNA.
EMBL; BC055770; AAH55770.1; -; mRNA.
CCDS; CCDS25322.1; -.
RefSeq; NP_780541.2; NM_175332.3.
UniGene; Mm.24506; -.
ProteinModelPortal; Q7TNS8; -.
SMR; Q7TNS8; -.
BioGrid; 222112; 27.
DIP; DIP-59969N; -.
IntAct; Q7TNS8; 27.
STRING; 10090.ENSMUSP00000051211; -.
PhosphoSitePlus; Q7TNS8; -.
PaxDb; Q7TNS8; -.
PeptideAtlas; Q7TNS8; -.
PRIDE; Q7TNS8; -.
Ensembl; ENSMUST00000052281; ENSMUSP00000051211; ENSMUSG00000043439.
GeneID; 103551; -.
KEGG; mmu:103551; -.
UCSC; uc007leg.1; mouse.
CTD; 100170841; -.
MGI; MGI:2143991; Epop.
eggNOG; ENOG410II10; Eukaryota.
eggNOG; ENOG41116AE; LUCA.
GeneTree; ENSGT00530000064183; -.
HOGENOM; HOG000111944; -.
HOVERGEN; HBG094969; -.
InParanoid; Q7TNS8; -.
OMA; FCALAKP; -.
OrthoDB; EOG091G02LG; -.
PhylomeDB; Q7TNS8; -.
TreeFam; TF337589; -.
PRO; PR:Q7TNS8; -.
Proteomes; UP000000589; Chromosome 11.
Bgee; ENSMUSG00000043439; -.
Genevisible; Q7TNS8; MM.
GO; GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003682; F:chromatin binding; IDA:UniProtKB.
GO; GO:0035616; P:histone H2B conserved C-terminal lysine deubiquitination; IMP:UniProtKB.
GO; GO:0048663; P:neuron fate commitment; IDA:MGI.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IDA:UniProtKB.
GO; GO:0048863; P:stem cell differentiation; IMP:UniProtKB.
InterPro; IPR027971; EPOP.
Pfam; PF15223; DUF4584; 1.
1: Evidence at protein level;
Chromatin regulator; Chromosome; Complete proteome; Methylation;
Nucleus; Phosphoprotein; Reference proteome.
CHAIN 1 369 Elongin BC and Polycomb repressive
complex 2-associated protein.
/FTId=PRO_0000332155.
REGION 39 48 BC-box. {ECO:0000269|PubMed:27863225,
ECO:0000269|PubMed:27863226}.
COMPBIAS 6 357 Pro-rich.
MOD_RES 15 15 Phosphoserine.
{ECO:0000250|UniProtKB:A6NHQ4}.
MOD_RES 19 19 Phosphoserine.
{ECO:0000250|UniProtKB:A6NHQ4}.
MOD_RES 52 52 Asymmetric dimethylarginine.
{ECO:0000250|UniProtKB:A6NHQ4}.
MUTAGEN 40 40 L->A: Abolishes interaction with the
elongin BC complex.
{ECO:0000269|PubMed:27863225,
ECO:0000269|PubMed:27863226}.
CONFLICT 129 129 F -> S (in Ref. 1; BAC39864).
{ECO:0000305}.
CONFLICT 135 135 A -> S (in Ref. 3; AAH06054).
{ECO:0000305}.
CONFLICT 286 286 P -> A (in Ref. 1; BAC39864).
{ECO:0000305}.
SEQUENCE 369 AA; 38095 MW; C93AC0213E4E97BF CRC64;
METLCPPPRL AVPASPRGSP CSPTPLKPRR GTPEFSPLCL RALAFCALAK PRPSSLGLGP
GELAPRTPVL LGPPASPCTG GWAADGLKHL GGQAGRPSDV SSPAREDADV AVCPGGGEEE
EGGGGFPHFG AGSCAPPGRC PAPLRPQDSP TNPAWSPPRP ARGLDAASSP PLEPGSPPPS
PPAGLSPEPA PSEQPVPASE APGGGDPAPT APEAPALSPS TADAAPDPPR DLRQEHFNRL
IRRSKLWCYA KGFALDTPSL RRGPERPAAK ARGAAKKRRR PAPPPPSVQP RRPVPTLPTS
STFSLLDCFP CPPALVVEEN GDLGPASSLR LQGDAKPPPA HPLWKWQMGG PAVPEPPGLK
SWWVNLEEL


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