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Enoyl-CoA delta isomerase 2, peroxisomal (EC 5.3.3.8) (Delta(3),Delta(2)-enoyl CoA isomerase 2) (AtECI2) (Indole-3-butyric acid response 10)

 ECI2_ARATH              Reviewed;         240 AA.
O23299; Q8LC07;
01-APR-2015, integrated into UniProtKB/Swiss-Prot.
01-JAN-1998, sequence version 1.
22-NOV-2017, entry version 121.
RecName: Full=Enoyl-CoA delta isomerase 2, peroxisomal {ECO:0000305};
EC=5.3.3.8 {ECO:0000269|PubMed:18657232};
AltName: Full=Delta(3),Delta(2)-enoyl CoA isomerase 2 {ECO:0000303|PubMed:18657232};
Short=AtECI2 {ECO:0000303|PubMed:18657232};
AltName: Full=Indole-3-butyric acid response 10 {ECO:0000303|PubMed:18725356};
Name=ECI2 {ECO:0000303|PubMed:18657232};
Synonyms=IBR10 {ECO:0000303|PubMed:18725356};
OrderedLocusNames=At4g14430 {ECO:0000312|Araport:AT4G14430};
ORFNames=dl3255c {ECO:0000312|EMBL:CAB10222.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9461215; DOI=10.1038/35140;
Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L.,
Ridley P., Hudson S.-A., Patel K., Murphy G., Piffanelli P.,
Wedler H., Wedler E., Wambutt R., Weitzenegger T., Pohl T., Terryn N.,
Gielen J., Villarroel R., De Clercq R., van Montagu M., Lecharny A.,
Aubourg S., Gy I., Kreis M., Lao N., Kavanagh T., Hempel S.,
Kotter P., Entian K.-D., Rieger M., Schaefer M., Funk B.,
Mueller-Auer S., Silvey M., James R., Monfort A., Pons A.,
Puigdomenech P., Douka A., Voukelatou E., Milioni D., Hatzopoulos P.,
Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A., Moores T.,
Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S., Ansorge W.,
Cooke R., Berger C., Delseny M., Voet M., Volckaert G., Mewes H.-W.,
Klosterman S., Schueller C., Chalwatzis N.;
"Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of
Arabidopsis thaliana.";
Nature 391:485-488(1998).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[7]
SUBCELLULAR LOCATION, AND IDENTIFICATION BY MASS SPECTROMETRY.
PubMed=17951448; DOI=10.1105/tpc.107.050989;
Reumann S., Babujee L., Ma C., Wienkoop S., Siemsen T.,
Antonicelli G.E., Rasche N., Lueder F., Weckwerth W., Jahn O.;
"Proteome analysis of Arabidopsis leaf peroxisomes reveals novel
targeting peptides, metabolic pathways, and defense mechanisms.";
Plant Cell 19:3170-3193(2007).
[8]
DISRUPTION PHENOTYPE.
PubMed=18725356; DOI=10.1534/genetics.108.090399;
Zolman B.K., Martinez N., Millius A., Adham A.R., Bartel B.;
"Identification and characterization of Arabidopsis indole-3-butyric
acid response mutants defective in novel peroxisomal enzymes.";
Genetics 180:237-251(2008).
[9]
FUNCTION, CATALYTIC ACTIVITY, SUBCELLULAR LOCATION, AND GENE FAMILY.
PubMed=18657232; DOI=10.1111/j.1365-313X.2008.03635.x;
Goepfert S., Vidoudez C., Tellgren-Roth C., Delessert S.,
Hiltunen J.K., Poirier Y.;
"Peroxisomal Delta(3),Delta(2)-enoyl CoA isomerases and evolution of
cytosolic paralogues in embryophytes.";
Plant J. 56:728-742(2008).
[10]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=20562230; DOI=10.1104/pp.110.157461;
Strader L.C., Culler A.H., Cohen J.D., Bartel B.;
"Conversion of endogenous indole-3-butyric acid to indole-3-acetic
acid drives cell expansion in Arabidopsis seedlings.";
Plant Physiol. 153:1577-1586(2010).
-!- FUNCTION: Able to isomerize both 3-cis and 3-trans double bonds
into the 2-trans form in a range of enoyl-CoA species. Essential
for the beta oxidation of unsaturated fatty acids
(PubMed:18657232). Involved with IBR1 and IBR3 in the peroxisomal
beta-oxidation of indole-3-butyric acid (IBA) to form indole-3-
acetic acid (IAA), a biologically active auxin (PubMed:20562230).
{ECO:0000269|PubMed:18657232, ECO:0000269|PubMed:20562230}.
-!- CATALYTIC ACTIVITY: (3Z)-dodec-3-enoyl-CoA = (2E)-dodec-2-enoyl-
CoA. {ECO:0000269|PubMed:18657232}.
-!- PATHWAY: Lipid metabolism; fatty acid beta-oxidation.
{ECO:0000305}.
-!- SUBCELLULAR LOCATION: Peroxisome {ECO:0000269|PubMed:17951448,
ECO:0000269|PubMed:18657232}.
-!- DISRUPTION PHENOTYPE: Defective in root hair expansion
(PubMed:20562230). Mutant plants are resistant to the inhibitory
effect of intermediate levels of indole-3-butyric acid (IBA) and
2,4-DB on root elongation (PubMed:18725356).
{ECO:0000269|PubMed:18725356, ECO:0000269|PubMed:20562230}.
-!- SIMILARITY: Belongs to the enoyl-CoA hydratase/isomerase family.
{ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; Z97336; CAB10222.1; -; Genomic_DNA.
EMBL; AL161539; CAB78485.1; -; Genomic_DNA.
EMBL; CP002687; AEE83444.1; -; Genomic_DNA.
EMBL; AF380640; AAK55721.1; -; mRNA.
EMBL; AY056091; AAL06979.1; -; mRNA.
EMBL; AK229431; BAF01291.1; -; mRNA.
EMBL; AY086877; AAM63923.1; -; mRNA.
PIR; D71406; D71406.
RefSeq; NP_193179.1; NM_117522.3.
UniGene; At.25366; -.
ProteinModelPortal; O23299; -.
SMR; O23299; -.
IntAct; O23299; 1.
STRING; 3702.AT4G14430.1; -.
PaxDb; O23299; -.
ProMEX; O23299; -.
EnsemblPlants; AT4G14430.1; AT4G14430.1; AT4G14430.
GeneID; 827088; -.
Gramene; AT4G14430.1; AT4G14430.1; AT4G14430.
KEGG; ath:AT4G14430; -.
Araport; AT4G14430; -.
TAIR; locus:2129730; AT4G14430.
eggNOG; ENOG410IJI2; Eukaryota.
eggNOG; ENOG410YFAM; LUCA.
HOGENOM; HOG000080529; -.
OMA; EMHNGED; -.
OrthoDB; EOG09360MHU; -.
PhylomeDB; O23299; -.
BioCyc; ARA:AT4G14430-MONOMER; -.
BioCyc; MetaCyc:AT4G14430-MONOMER; -.
UniPathway; UPA00659; -.
PRO; PR:O23299; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; O23299; baseline and differential.
Genevisible; O23299; AT.
GO; GO:0005777; C:peroxisome; IDA:TAIR.
GO; GO:0004165; F:dodecenoyl-CoA delta-isomerase activity; IDA:TAIR.
GO; GO:0006635; P:fatty acid beta-oxidation; IEA:UniProtKB-UniPathway.
GO; GO:0009062; P:fatty acid catabolic process; IMP:TAIR.
GO; GO:0080024; P:indolebutyric acid metabolic process; IMP:TAIR.
GO; GO:0080026; P:response to indolebutyric acid; IMP:TAIR.
GO; GO:0048767; P:root hair elongation; IMP:TAIR.
InterPro; IPR029045; ClpP/crotonase-like_dom_sf.
InterPro; IPR001753; Crotonase_core_superfam.
Pfam; PF00378; ECH_1; 1.
SUPFAM; SSF52096; SSF52096; 1.
1: Evidence at protein level;
Complete proteome; Fatty acid metabolism; Isomerase; Lipid metabolism;
Peroxisome; Reference proteome.
CHAIN 1 240 Enoyl-CoA delta isomerase 2, peroxisomal.
/FTId=PRO_0000432485.
MOTIF 238 240 Microbody targeting signal.
{ECO:0000305}.
SITE 135 135 Important for catalytic activity.
{ECO:0000250|UniProtKB:P42126}.
CONFLICT 226 226 G -> E (in Ref. 6; AAM63923).
{ECO:0000305}.
SEQUENCE 240 AA; 25773 MW; 71E08246F9B34EEB CRC64;
MCTLEKRGDL FLLTLTGDGE HRFHPDTIAT ILSLLEQAKS QSTRGSILIT TANGKFFSNG
FDLAWAQTAG SKTGAANRLH QMVESFKPVV AALLDLPMPT IAALNGHAAA AGLILALSHD
YVFMRKDRGV LYMSEVDIGL SMPDYFSALV RAKIGTSAAR RELLLSGKKI RGEEAVGLGI
VDSAAYDSEE GVVVASVRLG EKLAAKKWSG EVYASIRKSL YPELCGILGL ETRVFATPKL


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