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Eomesodermin homolog (T-box brain protein 2) (T-brain-2) (TBR-2)

 EOMES_MOUSE             Reviewed;         707 AA.
O54839; Q3UPL1; Q52KJ1; Q8BN22; Q9JJL1; Q9QYG7;
15-JUL-1999, integrated into UniProtKB/Swiss-Prot.
23-MAR-2010, sequence version 3.
25-OCT-2017, entry version 137.
RecName: Full=Eomesodermin homolog;
AltName: Full=T-box brain protein 2;
Short=T-brain-2;
Short=TBR-2;
Name=Eomes; Synonyms=Tbr2;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
TISSUE=Brain;
PubMed=10407135; DOI=10.1016/S0165-3806(99)00064-4;
Kimura N., Nakashima K., Ueno M., Taga T.;
"A novel mammalian T-box-containing gene, Tbr2, expressed in mouse
developing brain.";
Brain Res. Dev. Brain Res. 115:183-193(1999).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND ALTERNATIVE SPLICING (ISOFORM
2).
STRAIN=129/Sv; TISSUE=Liver;
PubMed=10974533; DOI=10.1016/S0378-1119(00)00290-0;
Ueno M., Kimura N., Nakashima K., Saito-Ohara F., Inazawa J., Taga T.;
"Genomic organization, sequence and chromosomal localization of the
mouse Tbr2 gene and a comparative study with Tbr1.";
Gene 254:29-35(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=C57BL/6J, and NOD; TISSUE=Olfactory bulb, and Spleen;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=C57BL/6J;
PubMed=19468303; DOI=10.1371/journal.pbio.1000112;
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S.,
She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W.,
Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T.,
Zhou S., Teague B., Potamousis K., Churas C., Place M., Herschleb J.,
Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z.,
Lindblad-Toh K., Eichler E.E., Ponting C.P.;
"Lineage-specific biology revealed by a finished genome assembly of
the mouse.";
PLoS Biol. 7:E1000112-E1000112(2009).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=C57BL/6J; TISSUE=Brain;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
NUCLEOTIDE SEQUENCE [MRNA] OF 278-457.
PubMed=9503012; DOI=10.1006/geno.1997.5150;
Wattler S., Russ A., Evans M., Nehls M.;
"A combined analysis of genomic and primary protein structure defines
the phylogenetic relationship of new members of the T-box family.";
Genomics 48:24-33(1998).
[7]
FUNCTION IN TROPHOBLAST DIFFERENTIATION, FUNCTION IN GASTRULATION,
DISRUPTION PHENOTYPE, AND DEVELOPMENTAL STAGE.
PubMed=10716450; DOI=10.1038/35003601;
Russ A.P., Wattler S., Colledge W.H., Aparicio S.A.J.R.,
Carlton M.B.L., Pearce J.J., Barton S.C., Surani M.A., Ryan K.,
Nehls M.C., Wilson V., Evans M.J.;
"Eomesodermin is required for mouse trophoblast development and
mesoderm formation.";
Nature 404:95-99(2000).
[8]
FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
PubMed=14605368; DOI=10.1126/science.1090148;
Pearce E.L., Mullen A.C., Martins G.A., Krawczyk C.M., Hutchins A.S.,
Zediak V.P., Banica M., DiCioccio C.B., Gross D.A., Mao C.-A.,
Shen H., Cereb N., Yang S.Y., Lindsten T., Rossant J., Hunter C.A.,
Reiner S.L.;
"Control of effector CD8+ T cell function by the transcription factor
Eomesodermin.";
Science 302:1041-1043(2003).
[9]
FUNCTION IN GASTRULATION.
PubMed=18171685; DOI=10.1242/dev.014357;
Arnold S.J., Hofmann U.K., Bikoff E.K., Robertson E.J.;
"Pivotal roles for eomesodermin during axis formation, epithelium-to-
mesenchyme transition and endoderm specification in the mouse.";
Development 135:501-511(2008).
[10]
FUNCTION, AND DEVELOPMENTAL STAGE.
PubMed=18940588; DOI=10.1016/j.neuron.2008.09.028;
Sessa A., Mao C.-A., Hadjantonakis A.-K., Klein W.H., Broccoli V.;
"Tbr2 directs conversion of radial glia into basal precursors and
guides neuronal amplification by indirect neurogenesis in the
developing neocortex.";
Neuron 60:56-69(2008).
[11]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-117 AND THR-473, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Brain, and Spleen;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and
expression.";
Cell 143:1174-1189(2010).
-!- FUNCTION: Functions as a transcriptional activator playing a
crucial role during development. Functions in trophoblast
differentiation and later in gastrulation, regulating both
mesoderm delamination and endoderm specification. Plays a role in
brain development being required for the specification and the
proliferation of the intermediate progenitor cells and their
progeny in the cerebral cortex. Also involved in the
differentiation of CD8+ T-cells during immune response regulating
the expression of lytic effector genes.
{ECO:0000269|PubMed:10716450, ECO:0000269|PubMed:14605368,
ECO:0000269|PubMed:18171685, ECO:0000269|PubMed:18940588}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=O54839-1; Sequence=Displayed;
Name=2;
IsoId=O54839-2; Sequence=VSP_038806;
-!- TISSUE SPECIFICITY: Expressed in CD8+ T-cells.
{ECO:0000269|PubMed:14605368}.
-!- DEVELOPMENTAL STAGE: Originally expressed in the trophoectoderm of
the blastocyst and later in the extraembryonic ectoderm of the
early post-implantation embryo. In the embryo proper, expressed in
the posterior part of the epiblast. During gastrulation, extends
distally into the primitive streak and nascent mesoderm. Also
expressed in the developing forebrain and the olfactory lobes.
Expressed at E12.5 and E14.5 in the forebrain.
{ECO:0000269|PubMed:10716450, ECO:0000269|PubMed:18940588}.
-!- INDUCTION: Up-regulated in CD8+ T-cells upon activation.
{ECO:0000269|PubMed:14605368}.
-!- DISRUPTION PHENOTYPE: Embryonic lethal due to peri-implantation
defects. Mutant embryos arrest soon after implantation and fail to
form organized embryonic or extraembryonic structures. Conditional
mutants, with expression abrogated in the inner cell mass of
embryos from early implantation stages onward, display
gastrulation defects. {ECO:0000269|PubMed:10716450}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; AB031037; BAA83416.1; -; mRNA.
EMBL; AB032373; BAB07808.1; -; Genomic_DNA.
EMBL; AK089817; BAC40968.1; -; mRNA.
EMBL; AK143454; BAE25384.1; -; mRNA.
EMBL; AC173340; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC094319; AAH94319.1; -; mRNA.
EMBL; AF013281; AAC16233.1; -; mRNA.
CCDS; CCDS23603.1; -. [O54839-1]
CCDS; CCDS52960.1; -. [O54839-2]
RefSeq; NP_001158261.1; NM_001164789.1. [O54839-2]
RefSeq; NP_034266.2; NM_010136.3. [O54839-1]
UniGene; Mm.200692; -.
ProteinModelPortal; O54839; -.
SMR; O54839; -.
BioGrid; 199457; 2.
IntAct; O54839; 1.
STRING; 10090.ENSMUSP00000035020; -.
iPTMnet; O54839; -.
PhosphoSitePlus; O54839; -.
PaxDb; O54839; -.
PeptideAtlas; O54839; -.
PRIDE; O54839; -.
Ensembl; ENSMUST00000035020; ENSMUSP00000035020; ENSMUSG00000032446. [O54839-1]
Ensembl; ENSMUST00000111763; ENSMUSP00000107393; ENSMUSG00000032446. [O54839-2]
GeneID; 13813; -.
KEGG; mmu:13813; -.
UCSC; uc009rzo.2; mouse. [O54839-1]
UCSC; uc009rzp.2; mouse. [O54839-2]
CTD; 8320; -.
MGI; MGI:1201683; Eomes.
eggNOG; KOG3585; Eukaryota.
eggNOG; ENOG410XSTS; LUCA.
GeneTree; ENSGT00900000140847; -.
HOGENOM; HOG000218633; -.
HOVERGEN; HBG000578; -.
InParanoid; O54839; -.
KO; K10173; -.
OMA; QPFFQDQ; -.
OrthoDB; EOG091G0PQQ; -.
PhylomeDB; O54839; -.
TreeFam; TF106341; -.
PRO; PR:O54839; -.
Proteomes; UP000000589; Chromosome 9.
Bgee; ENSMUSG00000032446; -.
CleanEx; MM_EOMES; -.
ExpressionAtlas; O54839; baseline and differential.
Genevisible; O54839; MM.
GO; GO:0005622; C:intracellular; IDA:MGI.
GO; GO:0005634; C:nucleus; IDA:MGI.
GO; GO:0003682; F:chromatin binding; IDA:MGI.
GO; GO:0003677; F:DNA binding; ISS:UniProtKB.
GO; GO:0001102; F:RNA polymerase II activating transcription factor binding; IPI:BHF-UCL.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IDA:MGI.
GO; GO:0043565; F:sequence-specific DNA binding; ISO:MGI.
GO; GO:0001191; F:transcriptional repressor activity, RNA polymerase II transcription factor binding; IDA:BHF-UCL.
GO; GO:0001227; F:transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding; IC:NTNU_SB.
GO; GO:0002250; P:adaptive immune response; IEA:UniProtKB-KW.
GO; GO:0001824; P:blastocyst development; IMP:MGI.
GO; GO:0007420; P:brain development; ISO:MGI.
GO; GO:0010002; P:cardioblast differentiation; IMP:MGI.
GO; GO:0002302; P:CD8-positive, alpha-beta T cell differentiation involved in immune response; IDA:UniProtKB.
GO; GO:0030154; P:cell differentiation; IMP:MGI.
GO; GO:0060706; P:cell differentiation involved in embryonic placenta development; IMP:UniProtKB.
GO; GO:0021895; P:cerebral cortex neuron differentiation; IDA:UniProtKB.
GO; GO:0021796; P:cerebral cortex regionalization; IMP:MGI.
GO; GO:0001706; P:endoderm formation; IMP:UniProtKB.
GO; GO:0001714; P:endodermal cell fate specification; IMP:MGI.
GO; GO:0032609; P:interferon-gamma production; IDA:MGI.
GO; GO:0001707; P:mesoderm formation; IMP:UniProtKB.
GO; GO:0060809; P:mesodermal to mesenchymal transition involved in gastrulation; IMP:UniProtKB.
GO; GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:BHF-UCL.
GO; GO:0021772; P:olfactory bulb development; IMP:MGI.
GO; GO:0045597; P:positive regulation of cell differentiation; IDA:MGI.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISO:MGI.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0010468; P:regulation of gene expression; IMP:MGI.
GO; GO:0050767; P:regulation of neurogenesis; IMP:MGI.
GO; GO:0045664; P:regulation of neuron differentiation; IMP:MGI.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IDA:MGI.
GO; GO:0035914; P:skeletal muscle cell differentiation; IMP:MGI.
GO; GO:0019827; P:stem cell population maintenance; IMP:MGI.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0001829; P:trophectodermal cell differentiation; IDA:MGI.
CDD; cd00182; TBOX; 1.
Gene3D; 2.60.40.820; -; 1.
InterPro; IPR008967; p53-like_TF_DNA-bd.
InterPro; IPR032385; T-box_assoc.
InterPro; IPR036960; T-box_sf.
InterPro; IPR001699; TF_T-box.
InterPro; IPR018186; TF_T-box_CS.
PANTHER; PTHR11267; PTHR11267; 1.
Pfam; PF00907; T-box; 1.
Pfam; PF16176; T-box_assoc; 1.
PRINTS; PR00937; TBOX.
SMART; SM00425; TBOX; 1.
SUPFAM; SSF49417; SSF49417; 1.
PROSITE; PS01283; TBOX_1; 1.
PROSITE; PS01264; TBOX_2; 1.
PROSITE; PS50252; TBOX_3; 1.
1: Evidence at protein level;
Activator; Adaptive immunity; Alternative splicing; Complete proteome;
Developmental protein; Differentiation; DNA-binding; Gastrulation;
Immunity; Nucleus; Phosphoprotein; Reference proteome; Transcription;
Transcription regulation.
CHAIN 1 707 Eomesodermin homolog.
/FTId=PRO_0000184460.
DNA_BIND 278 458 T-box. {ECO:0000255|PROSITE-
ProRule:PRU00201}.
REGION 592 707 Required for transcription activation.
{ECO:0000250}.
COMPBIAS 27 266 Gly-rich.
MOD_RES 117 117 Phosphoserine.
{ECO:0000244|PubMed:21183079}.
MOD_RES 473 473 Phosphothreonine.
{ECO:0000244|PubMed:21183079}.
VAR_SEQ 463 481 Missing (in isoform 2).
{ECO:0000303|PubMed:10407135}.
/FTId=VSP_038806.
CONFLICT 144 144 E -> D (in Ref. 3; BAC40968).
{ECO:0000305}.
CONFLICT 159 159 A -> T (in Ref. 3; BAC40968).
{ECO:0000305}.
CONFLICT 178 178 V -> G (in Ref. 1; BAA83416).
{ECO:0000305}.
SEQUENCE 707 AA; 74801 MW; 277AA462E214A927 CRC64;
MQLGEQLLVS SVNLPGAHFY SLESARGGGG GGGGGGGGGG GSVSLLPGAA PSPQRLDLDK
ASKKFPGSLP CQAGSAEPAG AGAGAPAAML SDADAGDTFG STSAVAKPGP PDGRKGSPCA
EEELPSAATA AATARYSMDS LSSERYYLPS PGPQGSELAA PCSLFQYPAA AGAAHGPVYP
ASNGARYPYG SMLPPGGFPA AVCPPARAQF GPAAGSGSGA GSSGGGAGGP GAYPYGQGSP
LYGPYAGTSA AGSCGGLGGL GVPGSGFRAH VYLCNRPLWL KFHRHQTEMI ITKQGRRMFP
FLSFNINGLN PTAHYNVFVE VVLADPNHWR FQGGKWVTCG KADNNMQGNK MYVHPESPNT
GSHWMRQEIS FGKLKLTNNK GANNNNTQMI VLQSLHKYQP RLHIVEVTED GVEDLNEPSK
TQTFTFSETQ FIAVTAYQNT DITQLKIDHN PFAKGFRDNY DSMYTASEND RLTPSPTDSP
RSHQIVPGGR YGVQNFFPEP FVNTLPQARY YNGERTVPQT NGLLSPQQSE EVANPPQRWL
VTPVQQPVTN KLDIGSYESE YTSSTLLPYG IKSLPLQTSH ALGYYPDPTF PAMAGWGGRG
AYQRKMAAGL PWTSRMSPPV FPEDQLAKEK VKEEISSSWI ETPPSIKSLD SSDSGVYNSA
CKRKRLSPST PSNGNSPPIK CEDINTEEYS KDTSKGMGAY YAFYTSP


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