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Epiphycan (Dermatan sulfate proteoglycan 3) (Proteoglycan-Lb) (PG-Lb) (Small chondroitin/dermatan sulfate proteoglycan)

 EPYC_CHICK              Reviewed;         316 AA.
Q90944;
08-NOV-2002, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
22-NOV-2017, entry version 114.
RecName: Full=Epiphycan;
AltName: Full=Dermatan sulfate proteoglycan 3;
AltName: Full=Proteoglycan-Lb;
Short=PG-Lb;
AltName: Full=Small chondroitin/dermatan sulfate proteoglycan;
Flags: Precursor;
Name=EPYC; Synonyms=DSPG3, PGLB;
Gallus gallus (Chicken).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
NCBI_TaxID=9031;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
STRAIN=White leghorn; TISSUE=Fetal epiphyseal cartilage;
PubMed=1730648;
Shinomura T., Kimata K.;
"Proteoglycan-Lb, a small dermatan sulfate proteoglycan expressed in
embryonic chick epiphyseal cartilage, is structurally related to
osteoinductive factor.";
J. Biol. Chem. 267:1265-1270(1992).
-!- FUNCTION: May have a role in bone formation and also in
establishing the ordered structure of cartilage through matrix
organization.
-!- SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular
matrix {ECO:0000250}.
-!- TISSUE SPECIFICITY: Preferentially expressed in flattened
chondrocytes of developing chick limb cartilage. Also found in the
cartilage peripheral zone bordering with bone marrow cavity.
{ECO:0000269|PubMed:1730648}.
-!- PTM: The O-linked glycosaminoglycan chain(s) are dermatan sulfate.
{ECO:0000305}.
-!- SIMILARITY: Belongs to the small leucine-rich proteoglycan (SLRP)
family. SLRP class III subfamily. {ECO:0000305}.
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EMBL; D10485; BAA01366.1; -; mRNA.
PIR; A41781; A41781.
RefSeq; NP_001004382.1; NM_001004382.1.
UniGene; Gga.3583; -.
ProteinModelPortal; Q90944; -.
STRING; 9031.ENSGALP00000018368; -.
PaxDb; Q90944; -.
Ensembl; ENSGALT00000018390; ENSGALP00000018368; ENSGALG00000011269.
GeneID; 417890; -.
KEGG; gga:417890; -.
CTD; 1833; -.
eggNOG; KOG0619; Eukaryota.
eggNOG; COG4886; LUCA.
GeneTree; ENSGT00730000110781; -.
HOGENOM; HOG000273909; -.
HOVERGEN; HBG006850; -.
InParanoid; Q90944; -.
KO; K08127; -.
OMA; CDDHELD; -.
OrthoDB; EOG091G0C68; -.
PhylomeDB; Q90944; -.
TreeFam; TF351924; -.
PRO; PR:Q90944; -.
Proteomes; UP000000539; Chromosome 1.
Bgee; ENSGALG00000011269; -.
GO; GO:0005615; C:extracellular space; IBA:GO_Central.
GO; GO:0005578; C:proteinaceous extracellular matrix; IBA:GO_Central.
GO; GO:0007409; P:axonogenesis; IBA:GO_Central.
Gene3D; 3.80.10.10; -; 2.
InterPro; IPR027217; Epiphycan.
InterPro; IPR001611; Leu-rich_rpt.
InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
InterPro; IPR032675; LRR_dom_sf.
InterPro; IPR000372; LRRNT.
PANTHER; PTHR24373:SF123; PTHR24373:SF123; 1.
Pfam; PF13855; LRR_8; 1.
SMART; SM00369; LRR_TYP; 4.
SMART; SM00013; LRRNT; 1.
SUPFAM; SSF52058; SSF52058; 1.
PROSITE; PS51450; LRR; 4.
2: Evidence at transcript level;
Complete proteome; Disulfide bond; Extracellular matrix; Glycoprotein;
Leucine-rich repeat; Proteoglycan; Reference proteome; Repeat;
Secreted; Signal.
SIGNAL 1 23 {ECO:0000255}.
CHAIN 24 316 Epiphycan.
/FTId=PRO_0000032770.
DOMAIN 100 137 LRRNT.
REPEAT 138 159 LRR 1.
REPEAT 162 183 LRR 2.
REPEAT 186 207 LRR 3.
REPEAT 232 252 LRR 4.
REPEAT 253 274 LRR 5.
REPEAT 284 304 LRR 6.
CARBOHYD 65 65 O-linked (Xyl...) (dermatan sulfate)
serine. {ECO:0000250}.
CARBOHYD 98 98 O-linked (Xyl...) (dermatan sulfate)
serine. {ECO:0000255}.
CARBOHYD 296 296 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
DISULFID 112 124 {ECO:0000250}.
DISULFID 273 306 {ECO:0000250}.
SEQUENCE 316 AA; 35857 MW; 681538A251454914 CRC64;
MKTFVNIFLG FFIFESVGAV PITDTVTYDS EFYDVSLGEL PHPFVSAEND QSDQVETEIG
TAIPSIIQES YSSAPLTEEP EEEASTPKLI DGSSAQGSGV LVPQTQDGLP TCLLCTCLGT
TVYCDDRELD AVPPLPKNTM YFYSRYNRIR KINKNDFANL NNLKRIDLTA NLISEIHEDA
FRRLPQLLEL VLRDNRIRQL PELPSTLTLI DISNNRLGRK GIRNEAFKDL HELQHLYITD
NNLDHVPLPL PESLQALHLQ NNNIQEMHED TFCKMRDFSY VRRALEDIRL DGNPINLSKT
PYAYMCLPRL PVGNLI


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