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Ethylene responsive element binding factor3 (Os01g0797600 protein) (cDNA clone:006-304-H01, full insert sequence)

 Q7F4G5_ORYSJ            Unreviewed;       235 AA.
Q7F4G5;
05-JUL-2004, integrated into UniProtKB/TrEMBL.
05-JUL-2004, sequence version 1.
23-MAY-2018, entry version 120.
SubName: Full=Ethylene responsive element binding factor3 {ECO:0000313|EMBL:BAB89900.1};
SubName: Full=Os01g0797600 protein {ECO:0000313|EMBL:BAF06433.1};
SubName: Full=cDNA clone:006-304-H01, full insert sequence {ECO:0000313|EMBL:BAG87890.1};
Name=Os01g0797600 {ECO:0000313|EMBL:BAS74765.1};
OrderedLocusNames=Os01g0797600 {ECO:0000313|EMBL:BAF06433.1};
ORFNames=OsJ_03753 {ECO:0000313|EMBL:EAZ13829.1},
OSNPB_010797600 {ECO:0000313|EMBL:BAS74765.1},
P0699H05.40 {ECO:0000313|EMBL:BAB89900.1};
Oryza sativa subsp. japonica (Rice).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
NCBI_TaxID=39947 {ECO:0000313|EMBL:BAB89900.1};
[1] {ECO:0000313|EMBL:BAB89900.1}
NUCLEOTIDE SEQUENCE.
PubMed=12447438; DOI=10.1038/nature01184;
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M.,
Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C.,
Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M.,
Ikeno M., Itoh S., Itoh T., Itoh Y., Itoh Y., Iwabuchi A., Kamiya K.,
Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I.,
Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y.,
Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M.,
Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M.,
Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K.,
Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K.,
Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.I., Eun M.Y.,
Yano M., Jiang J., Gojobori T.;
"The genome sequence and structure of rice chromosome 1.";
Nature 420:312-316(2002).
[2] {ECO:0000313|EMBL:BAG87890.1}
NUCLEOTIDE SEQUENCE.
Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N.,
Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K.,
Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K.,
Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T.,
Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H.,
Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K.,
Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M.,
Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M.,
Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T.,
Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y.,
Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y.,
Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T.,
Yoshino M., Hayashizaki Y.;
"Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from
japonica Rice.";
Science 301:376-379(2003).
[3] {ECO:0000313|EMBL:BAF06433.1, ECO:0000313|Proteomes:UP000059680}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680};
PubMed=16100779; DOI=10.1038/nature03895;
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[4] {ECO:0000313|EMBL:EAZ13829.1}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N.,
Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
Samudrala R., Wang J., Wong G.K., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[5] {ECO:0000313|EMBL:BAF06433.1}
NUCLEOTIDE SEQUENCE.
IRGSP(International Rice Genome Sequencing Project);
"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 1.";
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
[6] {ECO:0000313|EMBL:BAF06433.1}
NUCLEOTIDE SEQUENCE.
The Rice Annotation Project (RAP);
"The Second Rice Annotation Project Meeting (RAP2).";
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
[7] {ECO:0000313|EMBL:BAF06433.1}
NUCLEOTIDE SEQUENCE.
PubMed=16381971; DOI=10.1093/nar/gkj094;
Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K.,
Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K.,
Itoh T., Gojobori T., Sasaki T.;
"The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa
ssp. japonica genome information.";
Nucleic Acids Res. 34:D741-D744(2006).
[8] {ECO:0000313|EMBL:BAF06433.1}
NUCLEOTIDE SEQUENCE.
The Rice Annotation Project (RAP);
Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B.,
Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T.,
Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B.,
Harada E., Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S.,
Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P.,
Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P.,
Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D.,
Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R.,
Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N.,
Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S.,
Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N.,
Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y.,
Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y.,
Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T.,
Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A.,
Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y.,
Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.;
"Curated Genome Annotation of Oryza sativa ssp. japonica and
Comparative Genome Analysis with Arabidopsis thaliana.";
Genome Res. 17:175-183(2007).
[9] {ECO:0000313|EMBL:BAF06433.1}
NUCLEOTIDE SEQUENCE.
The Rice Annotation Project (RAP);
Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y.,
Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y.,
Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H.,
Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y.,
Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K.,
Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K.,
Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q.,
Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C.,
Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P.,
Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M.,
Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M.,
Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H.,
Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A.,
Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G.,
Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A.,
Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C.,
Piegu B., Panaud O., Echeverria M.;
"The Rice Annotation Project Database (RAP-DB): 2008 update.";
Nucleic Acids Res. 36:D1028-D1033(2008).
[10] {ECO:0000313|EMBL:EAZ13829.1}
NUCLEOTIDE SEQUENCE.
Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S.,
Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J.,
Samudrala R., Kristiansen K., Wong G.K.-S.;
"Improved gene annotation of the rice (Oryza sativa) genomes.";
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
[11] {ECO:0000313|EMBL:BAS74765.1}
NUCLEOTIDE SEQUENCE.
PubMed=23299411; DOI=10.1093/pcp/pcs183;
Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y.,
Wakimoto H., Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A.,
Inokuchi H., Ikemura T., Matsumoto T., Sasaki T., Itoh T.;
"Rice Annotation Project Database (RAP-DB): an integrative and
interactive database for rice genomics.";
Plant Cell Physiol. 54:E6-E6(2013).
[12] {ECO:0000313|EMBL:BAS74765.1, ECO:0000313|Proteomes:UP000059680}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680};
PubMed=24280374; DOI=10.1186/1939-8433-6-4;
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
Buell C.R., Matsumoto T.;
"Improvement of the Oryza sativa Nipponbare reference genome using
next generation sequence and optical map data.";
Rice 6:4-4(2013).
[13] {ECO:0000313|EMBL:BAS74765.1}
NUCLEOTIDE SEQUENCE.
Millard Andrew;
Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-
ProRule:PRU00366, ECO:0000256|SAAS:SAAS00550310}.
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EMBL; AP003299; BAB89900.1; -; Genomic_DNA.
EMBL; AP008207; BAF06433.1; -; Genomic_DNA.
EMBL; AK061380; BAG87890.1; -; mRNA.
EMBL; AP014957; BAS74765.1; -; Genomic_DNA.
EMBL; CM000138; EAZ13829.1; -; Genomic_DNA.
RefSeq; XP_015622082.1; XM_015766596.1.
UniGene; Os.3766; -.
STRING; 39947.LOC_Os01g58420.1; -.
EnsemblPlants; Os01t0797600-01; Os01t0797600-01; Os01g0797600.
GeneID; 4327621; -.
Gramene; Os01t0797600-01; Os01t0797600-01; Os01g0797600.
KEGG; osa:4327621; -.
eggNOG; ENOG410J0HH; Eukaryota.
eggNOG; ENOG410YQ8J; LUCA.
OMA; FKGYPVA; -.
OrthoDB; EOG09360Q3E; -.
Proteomes; UP000059680; Chromosome 1.
ExpressionAtlas; Q7F4G5; differential.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0003700; F:DNA binding transcription factor activity; IDA:UniProtKB.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:UniProtKB.
GO; GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB.
GO; GO:0010311; P:lateral root formation; IMP:UniProtKB.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:UniProtKB.
GO; GO:2000068; P:regulation of defense response to insect; IMP:UniProtKB.
GO; GO:0010364; P:regulation of ethylene biosynthetic process; IMP:UniProtKB.
GO; GO:0010728; P:regulation of hydrogen peroxide biosynthetic process; IMP:UniProtKB.
GO; GO:0080141; P:regulation of jasmonic acid biosynthetic process; IMP:UniProtKB.
GO; GO:0010337; P:regulation of salicylic acid metabolic process; IMP:UniProtKB.
GO; GO:0080113; P:regulation of seed growth; IMP:UniProtKB.
GO; GO:0009737; P:response to abscisic acid; IEP:UniProtKB.
GO; GO:0009733; P:response to auxin; IEP:UniProtKB.
GO; GO:0009409; P:response to cold; IMP:UniProtKB.
GO; GO:0009735; P:response to cytokinin; IEP:UniProtKB.
GO; GO:0009723; P:response to ethylene; IEP:UniProtKB.
GO; GO:0080027; P:response to herbivore; IEP:UniProtKB.
GO; GO:0009625; P:response to insect; IEP:UniProtKB.
GO; GO:0009753; P:response to jasmonic acid; IEP:UniProtKB.
GO; GO:0009751; P:response to salicylic acid; IEP:UniProtKB.
GO; GO:0009651; P:response to salt stress; IMP:UniProtKB.
GO; GO:0009414; P:response to water deprivation; IMP:UniProtKB.
GO; GO:0009611; P:response to wounding; IEP:UniProtKB.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
CDD; cd00018; AP2; 1.
Gene3D; 3.30.730.10; -; 1.
InterPro; IPR017392; AP2/ERF-transcript_factor.
InterPro; IPR001471; AP2/ERF_dom.
InterPro; IPR036955; AP2/ERF_dom_sf.
InterPro; IPR016177; DNA-bd_dom_sf.
Pfam; PF00847; AP2; 1.
PIRSF; PIRSF038123; PTI6; 2.
PRINTS; PR00367; ETHRSPELEMNT.
SMART; SM00380; AP2; 1.
SUPFAM; SSF54171; SSF54171; 1.
PROSITE; PS51032; AP2_ERF; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000059680};
DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00366,
ECO:0000256|SAAS:SAAS00585222};
Nucleus {ECO:0000256|PROSITE-ProRule:PRU00366,
ECO:0000256|SAAS:SAAS00550402};
Reference proteome {ECO:0000313|Proteomes:UP000059680};
Transcription {ECO:0000256|PROSITE-ProRule:PRU00366,
ECO:0000256|SAAS:SAAS00585199};
Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00366,
ECO:0000256|SAAS:SAAS00585199}.
DOMAIN 33 90 AP2/ERF. {ECO:0000259|PROSITE:PS51032}.
DNA_BIND 33 90 AP2/ERF. {ECO:0000256|PROSITE-
ProRule:PRU00366}.
SEQUENCE 235 AA; 24270 MW; 0235922FBAB4872C CRC64;
MAPRAATVEK VAVAPPTGLG LGVGGGVGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL
GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQSMVGCG GSPSSNSTVD TGGGGVQTPM
RAMPLPPTLD LDLFHRAAAV TAVAGTGVRF PFRGYPVARP ATHPYFFYEQ AAAAAAAEAG
YRMMKLAPPV TVAAVAQSDS DSSSVVDLAP SPPAVTANKA AAFDLDLNRP PPVEN


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