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Ethylene-responsive transcription factor RAP2-3 (Cadmium-induced protein AS30) (Ethylene response factor 72) (ERF72) (Ethylene-responsive element binding protein) (AtEBP) (Protein RELATED TO APETALA2 3) (Related to AP2 3)

 RAP23_ARATH             Reviewed;         248 AA.
P42736; O04382; O23105;
01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
10-JAN-2003, sequence version 2.
25-OCT-2017, entry version 146.
RecName: Full=Ethylene-responsive transcription factor RAP2-3;
AltName: Full=Cadmium-induced protein AS30;
AltName: Full=Ethylene response factor 72;
Short=ERF72;
AltName: Full=Ethylene-responsive element binding protein;
Short=AtEBP;
AltName: Full=Protein RELATED TO APETALA2 3;
Short=Related to AP2 3;
Name=RAP2-3; Synonyms=EBP, ERF072; OrderedLocusNames=At3g16770;
ORFNames=MGL6.1, MGL6.24;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, INTERACTION WITH TGA4/OBF4, AND
INDUCTION BY ETHYLENE.
STRAIN=cv. Columbia; TISSUE=Callus;
PubMed=9159183; DOI=10.1073/pnas.94.11.5961;
Buettner M., Singh K.B.;
"Arabidopsis thaliana ethylene-responsive element binding protein
(AtEBP), an ethylene-inducible, GCC box DNA-binding protein interacts
with an ocs element binding protein.";
Proc. Natl. Acad. Sci. U.S.A. 94:5961-5966(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
Choi S., Baek E., Lee S.;
Submitted (SEP-1994) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
PubMed=9192694; DOI=10.1073/pnas.94.13.7076;
Okamuro J.K., Caster B., Villarroel R., Van Montagu M., Jofuku K.D.;
"The AP2 domain of APETALA2 defines a large new family of DNA binding
proteins in Arabidopsis.";
Proc. Natl. Acad. Sci. U.S.A. 94:7076-7081(1997).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10819329; DOI=10.1093/dnares/7.2.131;
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
features of the regions of 4,504,864 bp covered by sixty P1 and TAC
clones.";
DNA Res. 7:131-135(2000).
[5]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[8]
SUBCELLULAR LOCATION, AND INTERACTION WITH ACBP2.
PubMed=15159625; DOI=10.1023/B:PLAN.0000028790.75090.ab;
Li H.-Y., Chye M.-L.;
"Arabidopsis Acyl-CoA-binding protein ACBP2 interacts with an
ethylene-responsive element-binding protein, AtEBP, via its ankyrin
repeats.";
Plant Mol. Biol. 54:233-243(2004).
[9]
GENE FAMILY, AND NOMENCLATURE.
PubMed=16407444; DOI=10.1104/pp.105.073783;
Nakano T., Suzuki K., Fujimura T., Shinshi H.;
"Genome-wide analysis of the ERF gene family in Arabidopsis and
rice.";
Plant Physiol. 140:411-432(2006).
[10]
SUBCELLULAR LOCATION, INDUCTION BY ETHYLENE; JASMONATE AND BOTRYTIS
CINEREA, TISSUE SPECIFICITY, AND INTERACTION WITH ACBP4.
PubMed=18836139; DOI=10.1093/jxb/ern241;
Li H.-Y., Xiao S., Chye M.-L.;
"Ethylene- and pathogen-inducible Arabidopsis acyl-CoA-binding protein
4 interacts with an ethylene-responsive element binding protein.";
J. Exp. Bot. 59:3997-4006(2008).
[11]
PHOSPHORYLATION AT SER-151, AND MUTAGENESIS OF SER-151.
PubMed=22631074; DOI=10.1042/BJ20111809;
Soerensson C., Lenman M., Veide-Vilg J., Schopper S., Ljungdahl T.,
Groetli M., Tamas M.J., Peck S.C., Andreasson E.;
"Determination of primary sequence specificity of Arabidopsis MAPKs
MPK3 and MPK6 leads to identification of new substrates.";
Biochem. J. 446:271-278(2012).
-!- FUNCTION: Probably acts as a transcriptional activator. Binds to
the GCC-box pathogenesis-related promoter element. May be involved
in the regulation of gene expression by stress factors and by
components of stress signal transduction pathways (By similarity).
{ECO:0000250, ECO:0000269|PubMed:9159183}.
-!- SUBUNIT: Interacts with TGA4/OBF4, ACBP2, and ACBP4.
{ECO:0000269|PubMed:15159625, ECO:0000269|PubMed:18836139,
ECO:0000269|PubMed:9159183}.
-!- INTERACTION:
Q9STP8:ACBP2; NbExp=3; IntAct=EBI-368243, EBI-368234;
Q9MA55:ACBP4; NbExp=4; IntAct=EBI-368243, EBI-2009699;
-!- SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Cell membrane.
-!- TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to
a lower extent, in roots, siliques and flowers.
{ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}.
-!- INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene
precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also
induced by cadmium. {ECO:0000269|PubMed:18836139,
ECO:0000269|PubMed:9159183}.
-!- SIMILARITY: Belongs to the AP2/ERF transcription factor family.
ERF subfamily. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=CAA71073.1; Type=Erroneous translation; Note=Wrong choice of frame.; Evidence={ECO:0000305};
Sequence=CAA85734.1; Type=Frameshift; Positions=20; Evidence={ECO:0000305};
Sequence=CAA85734.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact leading to an insertion into the sequence.; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; Y09942; CAA71073.1; ALT_SEQ; mRNA.
EMBL; Z37504; CAA85734.1; ALT_SEQ; mRNA.
EMBL; AF003096; AAC49769.1; -; mRNA.
EMBL; AB022217; BAB02769.1; -; Genomic_DNA.
EMBL; CP002686; AEE75863.1; -; Genomic_DNA.
EMBL; AY059917; AAL24399.1; -; mRNA.
EMBL; AY035100; AAK59605.1; -; mRNA.
EMBL; AY142562; AAN13131.1; -; mRNA.
EMBL; AY087488; AAM65031.1; -; mRNA.
RefSeq; NP_188299.1; NM_112550.5.
UniGene; At.24773; -.
ProteinModelPortal; P42736; -.
SMR; P42736; -.
BioGrid; 6263; 7.
ELM; P42736; -.
IntAct; P42736; 4.
STRING; 3702.AT3G16770.1; -.
iPTMnet; P42736; -.
PaxDb; P42736; -.
EnsemblPlants; AT3G16770.1; AT3G16770.1; AT3G16770.
GeneID; 820929; -.
Gramene; AT3G16770.1; AT3G16770.1; AT3G16770.
KEGG; ath:AT3G16770; -.
Araport; AT3G16770; -.
TAIR; locus:2089368; AT3G16770.
eggNOG; ENOG410IYVI; Eukaryota.
eggNOG; ENOG41113EY; LUCA.
HOGENOM; HOG000237624; -.
InParanoid; P42736; -.
KO; K09286; -.
OMA; DVWMIDD; -.
OrthoDB; EOG09360LUP; -.
PhylomeDB; P42736; -.
PRO; PR:P42736; -.
Proteomes; UP000006548; Chromosome 3.
Genevisible; P42736; AT.
GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0005886; C:plasma membrane; IDA:UniProtKB.
GO; GO:0003677; F:DNA binding; IDA:UniProtKB.
GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:TAIR.
GO; GO:0008219; P:cell death; IMP:TAIR.
GO; GO:0009873; P:ethylene-activated signaling pathway; TAS:TAIR.
GO; GO:0010286; P:heat acclimation; IMP:TAIR.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR.
GO; GO:0009735; P:response to cytokinin; IEP:TAIR.
GO; GO:0009723; P:response to ethylene; IEP:UniProtKB.
GO; GO:0009753; P:response to jasmonic acid; IEP:UniProtKB.
GO; GO:0051707; P:response to other organism; IEP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00018; AP2; 1.
Gene3D; 3.30.730.10; -; 1.
InterPro; IPR001471; AP2/ERF_dom.
InterPro; IPR036955; AP2/ERF_dom_sf.
InterPro; IPR016177; DNA-bd_dom.
Pfam; PF00847; AP2; 1.
PRINTS; PR00367; ETHRSPELEMNT.
SMART; SM00380; AP2; 1.
SUPFAM; SSF54171; SSF54171; 1.
PROSITE; PS51032; AP2_ERF; 1.
1: Evidence at protein level;
Cadmium; Cell membrane; Complete proteome; Cytoplasm; DNA-binding;
Membrane; Nucleus; Phosphoprotein; Reference proteome; Transcription;
Transcription regulation.
CHAIN 1 248 Ethylene-responsive transcription factor
RAP2-3.
/FTId=PRO_0000112523.
DNA_BIND 78 135 AP2/ERF. {ECO:0000255|PROSITE-
ProRule:PRU00366}.
COMPBIAS 140 143 Poly-Pro.
MOD_RES 151 151 Phosphoserine; by MAPK6.
{ECO:0000269|PubMed:22631074}.
MUTAGEN 151 151 S->A: Loss of phosphorylation by MAPK6.
{ECO:0000269|PubMed:22631074}.
CONFLICT 42 42 F -> N (in Ref. 2; CAA85734).
{ECO:0000305}.
CONFLICT 121 121 A -> P (in Ref. 2; CAA85734).
{ECO:0000305}.
CONFLICT 223 224 EQ -> AR (in Ref. 1; CAA71073).
{ECO:0000305}.
SEQUENCE 248 AA; 27758 MW; 317D50CC514782F1 CRC64;
MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA
VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAAMAYDV
AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV
ECIGFGNGDE FQNLSYGFEP DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML
DDVIASYE


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