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Exosome complex component Csl4

 A0A075I6F1_9ARCH        Unreviewed;       182 AA.
A0A075I6F1;
29-OCT-2014, integrated into UniProtKB/TrEMBL.
29-OCT-2014, sequence version 1.
27-SEP-2017, entry version 6.
RecName: Full=Exosome complex component Csl4 {ECO:0000256|HAMAP-Rule:MF_00975};
Name=CSL4 {ECO:0000313|EMBL:AIF23430.1};
Synonyms=csl4 {ECO:0000256|HAMAP-Rule:MF_00975},
EXOSC1 {ECO:0000313|EMBL:AIF23430.1};
uncultured marine thaumarchaeote SAT1000_15_H02.
Archaea; Thaumarchaeota; environmental samples.
NCBI_TaxID=1456386 {ECO:0000313|EMBL:AIF23430.1};
[1] {ECO:0000313|EMBL:AIF23430.1}
NUCLEOTIDE SEQUENCE.
PubMed=24923324; DOI=10.1093/gbe/evu127;
Deschamps P., Zivanovic Y., Moreira D., Rodriguez-Valera F.,
Lopez-Garcia P.;
"Pangenome evidence for extensive interdomain horizontal transfer
affecting lineage core and shell genes in uncultured planktonic
thaumarchaeota and euryarchaeota.";
Genome Biol. Evol. 6:1549-1563(2014).
-!- FUNCTION: Non-catalytic component of the exosome, which is a
complex involved in RNA degradation. Increases the RNA binding and
the efficiency of RNA degradation. Helpful for the interaction of
the exosome with A-poor RNAs. {ECO:0000256|HAMAP-Rule:MF_00975}.
-!- SUBUNIT: Component of the archaeal exosome complex. Forms a trimer
of Rrp4 and/or Csl4 subunits. The trimer associates with an
hexameric ring-like arrangement composed of 3 Rrp41-Rrp42
heterodimers. Interacts with DnaG. {ECO:0000256|HAMAP-
Rule:MF_00975}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00975}.
-!- SIMILARITY: Belongs to the CSL4 family. {ECO:0000256|HAMAP-
Rule:MF_00975}.
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EMBL; KF901231; AIF23430.1; -; Genomic_DNA.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-UniRule.
GO; GO:0006396; P:RNA processing; IEA:InterPro.
HAMAP; MF_00975; Exosome_Csl4; 1.
InterPro; IPR030850; Exosome_Csl4_arc.
InterPro; IPR012340; NA-bd_OB-fold.
SUPFAM; SSF50249; SSF50249; 1.
3: Inferred from homology;
Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00975};
Exosome {ECO:0000256|HAMAP-Rule:MF_00975};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_00975};
Zinc {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 141 141 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 144 144 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 157 157 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 160 160 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
SEQUENCE 182 AA; 20205 MW; DA01B273A5E4ED37 CRC64;
MSNSVLPGDK IAIIEEYEAG SNACDDGHVV RATVIGESEV DKKNRLVNVK NNKPISIPEK
DDIVIGTVEA VMGSMIAVMI KYINSRPVKS QVECICATRN IRKRNIALVK DLVKLKIIGH
LNGAIHATIQ DPELGVLFTK CRKCGMDVKP LRDIVKCVEC GWTDDRKLSN DFLKTDFLKV
RE


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