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Exosome complex component Csl4

 A0A0T5ZG52_9ARCH        Unreviewed;       183 AA.
A0A0T5ZG52;
17-FEB-2016, integrated into UniProtKB/TrEMBL.
17-FEB-2016, sequence version 1.
27-SEP-2017, entry version 6.
RecName: Full=Exosome complex component Csl4 {ECO:0000256|HAMAP-Rule:MF_00975};
Name=csl4 {ECO:0000256|HAMAP-Rule:MF_00975};
ORFNames=XU09_C0003G0015 {ECO:0000313|EMBL:KRT61804.1};
Thaumarchaeota archaeon CSP1-1.
Archaea; Thaumarchaeota; unclassified Thaumarchaeota.
NCBI_TaxID=1640512 {ECO:0000313|EMBL:KRT61804.1, ECO:0000313|Proteomes:UP000051388};
[1] {ECO:0000313|EMBL:KRT61804.1, ECO:0000313|Proteomes:UP000051388}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=CSP1-1 {ECO:0000313|EMBL:KRT61804.1};
Hug L.A., Thomas B.C., Sharon I., Brown C.T., Sharma R., Hettich R.L.,
Wilkins M.J., Williams K.H., Singh A., Banfield J.F.;
"Critical biogeochemical functions in the subsurface are associated
with bacteria from new phyla and little studied lineages.";
Submitted (MAY-2015) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Non-catalytic component of the exosome, which is a
complex involved in RNA degradation. Increases the RNA binding and
the efficiency of RNA degradation. Helpful for the interaction of
the exosome with A-poor RNAs. {ECO:0000256|HAMAP-Rule:MF_00975}.
-!- SUBUNIT: Component of the archaeal exosome complex. Forms a trimer
of Rrp4 and/or Csl4 subunits. The trimer associates with an
hexameric ring-like arrangement composed of 3 Rrp41-Rrp42
heterodimers. Interacts with DnaG. {ECO:0000256|HAMAP-
Rule:MF_00975}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00975}.
-!- SIMILARITY: Belongs to the CSL4 family. {ECO:0000256|HAMAP-
Rule:MF_00975}.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:KRT61804.1}.
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EMBL; LDXL01000003; KRT61804.1; -; Genomic_DNA.
PATRIC; fig|1640512.3.peg.297; -.
Proteomes; UP000051388; Unassembled WGS sequence.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-UniRule.
GO; GO:0006396; P:RNA processing; IEA:InterPro.
HAMAP; MF_00975; Exosome_Csl4; 1.
InterPro; IPR025721; Exosome_cplx_N_dom.
InterPro; IPR030850; Exosome_Csl4_arc.
InterPro; IPR012340; NA-bd_OB-fold.
Pfam; PF14382; ECR1_N; 1.
SUPFAM; SSF50249; SSF50249; 1.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000051388};
Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00975};
Exosome {ECO:0000256|HAMAP-Rule:MF_00975};
Membrane {ECO:0000256|SAM:Phobius};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_00975};
Reference proteome {ECO:0000313|Proteomes:UP000051388};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius};
Zinc {ECO:0000256|HAMAP-Rule:MF_00975}.
TRANSMEM 64 84 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 7 41 ECR1_N. {ECO:0000259|Pfam:PF14382}.
METAL 142 142 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 145 145 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 158 158 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 161 161 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
SEQUENCE 183 AA; 20152 MW; 37E344D225227FB6 CRC64;
MSDNQAIPGD KIAIIEEYEG GKNTFEDGHN VRATVVGTTE IDKKNRIALV HNLKFTGIPE
VNDIVVGTVA AVMSSMIAVS INYVNNNRTK SNVECICQTR HLRKKNVALV NDVVVLKIIA
HKNGTIHATI SEPELGVLYT KCKKCGGKVI PMRDAIKCTE CNWIDERKLS NNFGKSNFVK
LGE


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