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Exosome complex component Csl4

 Q9YEY9_AERPE            Unreviewed;       215 AA.
Q9YEY9;
01-NOV-1999, integrated into UniProtKB/TrEMBL.
01-NOV-1999, sequence version 1.
27-SEP-2017, entry version 89.
RecName: Full=Exosome complex component Csl4 {ECO:0000256|HAMAP-Rule:MF_00975};
Name=csl4 {ECO:0000256|HAMAP-Rule:MF_00975};
OrderedLocusNames=APE_0445 {ECO:0000313|EMBL:BAA79407.1};
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1).
Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales;
Desulfurococcaceae; Aeropyrum.
NCBI_TaxID=272557 {ECO:0000313|EMBL:BAA79407.1, ECO:0000313|Proteomes:UP000002518};
[1] {ECO:0000313|EMBL:BAA79407.1, ECO:0000313|Proteomes:UP000002518}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1
{ECO:0000313|Proteomes:UP000002518};
PubMed=10382966; DOI=10.1093/dnares/6.2.83;
Kawarabayasi Y., Hino Y., Horikawa H., Yamazaki S., Haikawa Y.,
Jin-no K., Takahashi M., Sekine M., Baba S., Ankai A., Kosugi H.,
Hosoyama A., Fukui S., Nagai Y., Nishijima K., Nakazawa H.,
Takamiya M., Masuda S., Funahashi T., Tanaka T., Kudoh Y.,
Yamazaki J., Kushida N., Oguchi A., Aoki K., Kubota K., Nakamura Y.,
Nomura N., Sako Y., Kikuchi H.;
"Complete genome sequence of an aerobic hyper-thermophilic
crenarchaeon, Aeropyrum pernix K1.";
DNA Res. 6:83-101(1999).
-!- FUNCTION: Non-catalytic component of the exosome, which is a
complex involved in RNA degradation. Increases the RNA binding and
the efficiency of RNA degradation. Helpful for the interaction of
the exosome with A-poor RNAs. {ECO:0000256|HAMAP-Rule:MF_00975}.
-!- SUBUNIT: Component of the archaeal exosome complex. Forms a trimer
of Rrp4 and/or Csl4 subunits. The trimer associates with an
hexameric ring-like arrangement composed of 3 Rrp41-Rrp42
heterodimers. Interacts with DnaG. {ECO:0000256|HAMAP-
Rule:MF_00975}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00975}.
-!- SIMILARITY: Belongs to the CSL4 family. {ECO:0000256|HAMAP-
Rule:MF_00975}.
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EMBL; BA000002; BAA79407.1; -; Genomic_DNA.
PIR; C72739; C72739.
ProteinModelPortal; Q9YEY9; -.
STRING; 272557.APE_0445; -.
EnsemblBacteria; BAA79407; BAA79407; APE_0445.
KEGG; ape:APE_0445; -.
eggNOG; arCOG00676; Archaea.
eggNOG; COG1096; LUCA.
HOGENOM; HOG000222781; -.
KO; K07573; -.
OMA; CGNVETR; -.
OrthoDB; POG093Z0LVA; -.
Proteomes; UP000002518; Chromosome.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-UniRule.
GO; GO:0006396; P:RNA processing; IEA:InterPro.
HAMAP; MF_00975; Exosome_Csl4; 1.
InterPro; IPR025721; Exosome_cplx_N_dom.
InterPro; IPR030850; Exosome_Csl4_arc.
InterPro; IPR012340; NA-bd_OB-fold.
InterPro; IPR003029; S1_domain.
Pfam; PF14382; ECR1_N; 1.
SUPFAM; SSF50249; SSF50249; 1.
PROSITE; PS50126; S1; 1.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000002518};
Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00975};
Exosome {ECO:0000256|HAMAP-Rule:MF_00975};
Hydrolase {ECO:0000313|EMBL:BAA79407.1};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_00975};
Reference proteome {ECO:0000313|Proteomes:UP000002518};
Zinc {ECO:0000256|HAMAP-Rule:MF_00975}.
DOMAIN 84 144 S1 motif. {ECO:0000259|PROSITE:PS50126}.
METAL 165 165 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 168 168 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 182 182 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
METAL 185 185 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}.
SEQUENCE 215 AA; 23836 MW; A540AB5837CFD845 CRC64;
MSYSSQGVVE KGKVMPGDVL ATIEEFLPGE GVYVDPVKGF IRAAAPGVAY LDMSRRIAYV
KPHKKPQTPG PGSEVAALVT GVRGDLVVAE VYGVVRLSPK PAWLYELPSP YSAAIPISQI
ADEYIKNIED YYRMGDWILA KIVSRTPPFT LSTVEPRYGV VYAICSRCGA VMEFQSERSM
KCPKCGNVEK RKVSIHAKSR HLRIRLVRNL VIYRS


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