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F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat protein 19)

 FXL19_HUMAN             Reviewed;         694 AA.
Q6PCT2; A8MT10; Q8N789; Q9NT14;
15-MAR-2005, integrated into UniProtKB/Swiss-Prot.
08-FEB-2011, sequence version 3.
23-MAY-2018, entry version 134.
RecName: Full=F-box/LRR-repeat protein 19;
AltName: Full=F-box and leucine-rich repeat protein 19;
Name=FBXL19; Synonyms=FBL19;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15616553; DOI=10.1038/nature03187;
Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X.,
Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A.,
Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J.,
Buckingham J.M., Callen D.F., Campbell C.S., Campbell M.L.,
Campbell E.W., Caoile C., Challacombe J.F., Chasteen L.A.,
Chertkov O., Chi H.C., Christensen M., Clark L.M., Cohn J.D.,
Denys M., Detter J.C., Dickson M., Dimitrijevic-Bussod M., Escobar J.,
Fawcett J.J., Flowers D., Fotopulos D., Glavina T., Gomez M.,
Gonzales E., Goodstein D., Goodwin L.A., Grady D.L., Grigoriev I.,
Groza M., Hammon N., Hawkins T., Haydu L., Hildebrand C.E., Huang W.,
Israni S., Jett J., Jewett P.B., Kadner K., Kimball H., Kobayashi A.,
Krawczyk M.-C., Leyba T., Longmire J.L., Lopez F., Lou Y., Lowry S.,
Ludeman T., Manohar C.F., Mark G.A., McMurray K.L., Meincke L.J.,
Morgan J., Moyzis R.K., Mundt M.O., Munk A.C., Nandkeshwar R.D.,
Pitluck S., Pollard M., Predki P., Parson-Quintana B., Ramirez L.,
Rash S., Retterer J., Ricke D.O., Robinson D.L., Rodriguez A.,
Salamov A., Saunders E.H., Scott D., Shough T., Stallings R.L.,
Stalvey M., Sutherland R.D., Tapia R., Tesmer J.G., Thayer N.,
Thompson L.S., Tice H., Torney D.C., Tran-Gyamfi M., Tsai M.,
Ulanovsky L.E., Ustaszewska A., Vo N., White P.S., Williams A.L.,
Wills P.L., Wu J.-R., Wu K., Yang J., DeJong P., Bruce D.,
Doggett N.A., Deaven L., Schmutz J., Grimwood J., Richardson P.,
Rokhsar D.S., Eichler E.E., Gilna P., Lucas S.M., Myers R.M.,
Rubin E.M., Pennacchio L.A.;
"The sequence and analysis of duplication-rich human chromosome 16.";
Nature 432:988-994(2004).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 67-694 (ISOFORM 2).
TISSUE=Duodenum;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 106-694 (ISOFORM 3).
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 545-694 (ISOFORM 1).
TISSUE=Testis;
PubMed=17974005; DOI=10.1186/1471-2164-8-399;
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U.,
Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H.,
Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K.,
Ottenwaelder B., Poustka A., Wiemann S., Schupp I.;
"The full-ORF clone resource of the German cDNA consortium.";
BMC Genomics 8:399-399(2007).
[5]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21406692; DOI=10.1126/scisignal.2001570;
Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J.,
Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V.,
Blagoev B.;
"System-wide temporal characterization of the proteome and
phosphoproteome of human embryonic stem cell differentiation.";
Sci. Signal. 4:RS3-RS3(2011).
-!- FUNCTION: Substrate-recognition component of the SCF (SKP1-CUL1-F-
box protein)-type E3 ubiquitin ligase complex. {ECO:0000250}.
-!- SUBUNIT: Directly interacts with SKP1 and CUL1. {ECO:0000250}.
-!- INTERACTION:
P14719:Il1rl1 (xeno); NbExp=3; IntAct=EBI-6664563, EBI-525078;
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=3;
Name=1;
IsoId=Q6PCT2-1; Sequence=Displayed;
Name=2;
IsoId=Q6PCT2-2; Sequence=VSP_013015;
Name=3;
IsoId=Q6PCT2-3; Sequence=VSP_040503;
-!- CAUTION: It is uncertain whether Met-1 or Met-21 is the initiator.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAH59173.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Sequence=BAC05410.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
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EMBL; AC135048; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC059173; AAH59173.1; ALT_INIT; mRNA.
EMBL; AK098777; BAC05410.1; ALT_INIT; mRNA.
EMBL; AL137589; CAB70830.1; -; mRNA.
CCDS; CCDS45465.1; -. [Q6PCT2-1]
PIR; T46301; T46301.
RefSeq; NP_001093254.2; NM_001099784.2. [Q6PCT2-1]
RefSeq; NP_001269280.1; NM_001282351.1.
UniGene; Hs.152149; -.
PDB; 6ASB; X-ray; 2.85 A; C/F/I/L=31-153.
PDBsum; 6ASB; -.
ProteinModelPortal; Q6PCT2; -.
SMR; Q6PCT2; -.
BioGrid; 120078; 28.
IntAct; Q6PCT2; 19.
STRING; 9606.ENSP00000369666; -.
iPTMnet; Q6PCT2; -.
PhosphoSitePlus; Q6PCT2; -.
BioMuta; FBXL19; -.
DMDM; 322510127; -.
EPD; Q6PCT2; -.
MaxQB; Q6PCT2; -.
PaxDb; Q6PCT2; -.
PeptideAtlas; Q6PCT2; -.
PRIDE; Q6PCT2; -.
Ensembl; ENST00000380310; ENSP00000369666; ENSG00000099364. [Q6PCT2-1]
GeneID; 54620; -.
KEGG; hsa:54620; -.
UCSC; uc002eab.2; human. [Q6PCT2-1]
CTD; 54620; -.
DisGeNET; 54620; -.
EuPathDB; HostDB:ENSG00000099364.16; -.
GeneCards; FBXL19; -.
H-InvDB; HIX0020867; -.
HGNC; HGNC:25300; FBXL19.
HPA; HPA035317; -.
MIM; 609085; gene.
neXtProt; NX_Q6PCT2; -.
OpenTargets; ENSG00000099364; -.
PharmGKB; PA134911396; -.
eggNOG; KOG1633; Eukaryota.
eggNOG; KOG1947; Eukaryota.
eggNOG; ENOG410ZJED; LUCA.
GeneTree; ENSGT00550000074396; -.
HOGENOM; HOG000112677; -.
HOVERGEN; HBG061227; -.
InParanoid; Q6PCT2; -.
KO; K10285; -.
OMA; QAVCPCL; -.
OrthoDB; EOG091G04FK; -.
PhylomeDB; Q6PCT2; -.
TreeFam; TF338452; -.
Reactome; R-HSA-8951664; Neddylation.
Reactome; R-HSA-983168; Antigen processing: Ubiquitination & Proteasome degradation.
ChiTaRS; FBXL19; human.
GenomeRNAi; 54620; -.
PRO; PR:Q6PCT2; -.
Proteomes; UP000005640; Chromosome 16.
Bgee; ENSG00000099364; -.
ExpressionAtlas; Q6PCT2; baseline and differential.
Genevisible; Q6PCT2; HS.
GO; GO:0005829; C:cytosol; TAS:Reactome.
GO; GO:0019005; C:SCF ubiquitin ligase complex; IDA:MGI.
GO; GO:0003677; F:DNA binding; IEA:InterPro.
GO; GO:0004842; F:ubiquitin-protein transferase activity; EXP:Reactome.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0043687; P:post-translational protein modification; TAS:Reactome.
GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IDA:MGI.
GO; GO:0000209; P:protein polyubiquitination; TAS:Reactome.
Gene3D; 3.30.40.10; -; 1.
Gene3D; 3.80.10.10; -; 1.
InterPro; IPR001810; F-box_dom.
InterPro; IPR006553; Leu-rich_rpt_Cys-con_subtyp.
InterPro; IPR032675; LRR_dom_sf.
InterPro; IPR019786; Zinc_finger_PHD-type_CS.
InterPro; IPR002857; Znf_CXXC.
InterPro; IPR011011; Znf_FYVE_PHD.
InterPro; IPR001965; Znf_PHD.
InterPro; IPR019787; Znf_PHD-finger.
InterPro; IPR013083; Znf_RING/FYVE/PHD.
Pfam; PF00646; F-box; 1.
Pfam; PF16866; PHD_4; 1.
Pfam; PF02008; zf-CXXC; 1.
SMART; SM00256; FBOX; 1.
SMART; SM00367; LRR_CC; 2.
SMART; SM00249; PHD; 1.
SUPFAM; SSF57903; SSF57903; 1.
PROSITE; PS51058; ZF_CXXC; 1.
PROSITE; PS01359; ZF_PHD_1; 1.
PROSITE; PS50016; ZF_PHD_2; 1.
1: Evidence at protein level;
3D-structure; Alternative splicing; Complete proteome;
Leucine-rich repeat; Metal-binding; Reference proteome; Repeat;
Ubl conjugation pathway; Zinc; Zinc-finger.
CHAIN 1 694 F-box/LRR-repeat protein 19.
/FTId=PRO_0000119868.
DOMAIN 418 464 F-box.
REPEAT 492 517 LRR 1.
REPEAT 518 541 LRR 2.
REPEAT 581 606 LRR 3.
REPEAT 607 636 LRR 4.
REPEAT 637 661 LRR 5.
REPEAT 662 694 LRR 6.
ZN_FING 32 78 CXXC-type. {ECO:0000255|PROSITE-
ProRule:PRU00509}.
ZN_FING 85 151 PHD-type. {ECO:0000255|PROSITE-
ProRule:PRU00146}.
COMPBIAS 22 25 Poly-Ser.
COMPBIAS 33 47 Arg-rich.
COMPBIAS 186 302 Pro-rich.
COMPBIAS 324 342 Ser-rich.
COMPBIAS 375 425 Pro-rich.
VAR_SEQ 241 283 Missing (in isoform 2).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_013015.
VAR_SEQ 643 694 HCLPLFRRCPRLRRLDLRSCRQLSPEACARLAAAGPPGPFR
CPEEKLLLKDS -> PAGLGPWAPGLYNTVCYKTQNLP
(in isoform 3).
{ECO:0000303|PubMed:14702039}.
/FTId=VSP_040503.
HELIX 43 46 {ECO:0000244|PDB:6ASB}.
HELIX 54 58 {ECO:0000244|PDB:6ASB}.
HELIX 60 62 {ECO:0000244|PDB:6ASB}.
TURN 89 91 {ECO:0000244|PDB:6ASB}.
HELIX 97 99 {ECO:0000244|PDB:6ASB}.
HELIX 103 108 {ECO:0000244|PDB:6ASB}.
STRAND 112 114 {ECO:0000244|PDB:6ASB}.
TURN 115 117 {ECO:0000244|PDB:6ASB}.
HELIX 123 125 {ECO:0000244|PDB:6ASB}.
STRAND 137 139 {ECO:0000244|PDB:6ASB}.
STRAND 142 144 {ECO:0000244|PDB:6ASB}.
HELIX 146 150 {ECO:0000244|PDB:6ASB}.
SEQUENCE 694 AA; 75707 MW; 8D8A3BC4C86AD396 CRC64;
MGMKVPGKGE SGPSALLTPP MSSSSRGPGA GARRRRTRCR RCRACVRTEC GDCHFCRDMK
KFGGPGRMKQ SCLLRQCTAP VLPHTAVCLL CGEAGKEDTV EGEEEKFGLS LMECTICNEI
VHPGCLKMGK AEGVINAEIP NCWECPRCTQ EGRTSKDSGE GPGRRRADNG EEGASLGSGW
KLTEEPPLPP PPPRRKGPLP AGPPPEDVPG PPKRKEREAG NEPPTPRKKV KGGRERHLKK
VGGDACLLRG SDPGGPGLLP PRVLNPSQAF SSCHPGLPPE NWEKPKPPLA SAEGPAVPSP
SPQREKLERF KRMCQLLERV PDTSSSSSDS DSDSDSSGTS LSEDEAPGEA RNGRRPARGS
SGEKENRGGR RAVRPGSGGP LLSWPLGPAP PPRPPQLERH VVRPPPRSPE PDTLPLAAGS
DHPLPRAAWL RVFQHLGPRE LCICMRVCRT WSRWCYDKRL WPRMDLSRRK SLTPPMLSGV
VRRQPRALDL SWTGVSKKQL MWLLNRLQGL QELVLSGCSW LSVSALGSAP LPALRLLDLR
WIEDVKDSQL RELLLPPPDT KPGQTESRGR LQGVAELRLA GLELTDASLR LLLRHAPQLS
ALDLSHCAHV GDPSVHLLTA PTSPLRETLV HLNLAGCHRL TDHCLPLFRR CPRLRRLDLR
SCRQLSPEAC ARLAAAGPPG PFRCPEEKLL LKDS


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