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FI23031p1 (Spalt-related, isoform A) (Spalt-related, isoform B) (Spalt-related, isoform C)

 Q9VKH3_DROME            Unreviewed;      1267 AA.
Q9VKH3;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-MAY-2000, sequence version 1.
18-JUL-2018, entry version 146.
SubName: Full=FI23031p1 {ECO:0000313|EMBL:AHL21632.1};
SubName: Full=Spalt-related, isoform A {ECO:0000313|EMBL:AAF53096.1};
SubName: Full=Spalt-related, isoform B {ECO:0000313|EMBL:AAN10780.1};
SubName: Full=Spalt-related, isoform C {ECO:0000313|EMBL:AFH03657.1};
Name=salr {ECO:0000313|EMBL:AAF53096.1,
ECO:0000313|FlyBase:FBgn0000287};
Synonyms=32F {ECO:0000313|EMBL:AAF53096.1},
Cf3 {ECO:0000313|EMBL:AAF53096.1},
Dmel\CG4881 {ECO:0000313|EMBL:AAF53096.1},
sal {ECO:0000313|EMBL:AAF53096.1},
Sal-r {ECO:0000313|EMBL:AAF53096.1},
sal-r {ECO:0000313|EMBL:AAF53096.1},
Salr {ECO:0000313|EMBL:AAF53096.1},
salR {ECO:0000313|EMBL:AAF53096.1},
salr-RB {ECO:0000313|EMBL:AHL21632.1},
Spalt {ECO:0000313|EMBL:AAF53096.1},
spalt {ECO:0000313|EMBL:AAF53096.1};
ORFNames=CG4881 {ECO:0000313|EMBL:AAF53096.1,
ECO:0000313|FlyBase:FBgn0000287},
Dmel_CG4881 {ECO:0000313|EMBL:AAF53096.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF53096.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF53096.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF53096.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF53096.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF53096.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[5] {ECO:0000313|EMBL:AAF53096.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAF53096.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AAF53096.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AAF53096.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF53096.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[10] {ECO:0000313|EMBL:AAF53096.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[11] {ECO:0000313|EMBL:AHL21632.1}
NUCLEOTIDE SEQUENCE.
Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.;
Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
[12] {ECO:0000313|EMBL:AAF53096.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
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EMBL; AE014134; AAF53096.1; -; Genomic_DNA.
EMBL; AE014134; AAN10780.1; -; Genomic_DNA.
EMBL; AE014134; AFH03657.1; -; Genomic_DNA.
EMBL; BT150428; AHL21632.1; -; mRNA.
RefSeq; NP_001245983.1; NM_001259054.2.
RefSeq; NP_523548.1; NM_078824.3.
RefSeq; NP_723669.1; NM_164965.2.
STRING; 7227.FBpp0297936; -.
PRIDE; Q9VKH3; -.
EnsemblMetazoa; FBtr0080235; FBpp0079822; FBgn0000287.
EnsemblMetazoa; FBtr0080236; FBpp0079823; FBgn0000287.
EnsemblMetazoa; FBtr0307093; FBpp0297936; FBgn0000287.
GeneID; 34568; -.
KEGG; dme:Dmel_CG4881; -.
UCSC; CG4881-RA; d. melanogaster.
CTD; 34568; -.
FlyBase; FBgn0000287; salr.
eggNOG; KOG1074; Eukaryota.
eggNOG; ENOG410ZE3Z; LUCA.
GeneTree; ENSGT00550000074555; -.
KO; K19871; -.
OMA; QMHIRTH; -.
OrthoDB; EOG091G02AM; -.
Reactome; R-DME-8943724; Regulation of PTEN gene transcription.
ChiTaRS; sls; fly.
GenomeRNAi; 34568; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0000287; -.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0003700; F:DNA binding transcription factor activity; IBA:GO_Central.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; ISS:FlyBase.
GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0048098; P:antennal joint development; IMP:FlyBase.
GO; GO:0008586; P:imaginal disc-derived wing vein morphogenesis; TAS:FlyBase.
GO; GO:0030539; P:male genitalia development; IMP:FlyBase.
GO; GO:0008584; P:male gonad development; IMP:FlyBase.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; ISS:FlyBase.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
GO; GO:0007423; P:sensory organ development; IMP:FlyBase.
GO; GO:0007605; P:sensory perception of sound; IMP:FlyBase.
GO; GO:0007165; P:signal transduction; IBA:GO_Central.
GO; GO:0006366; P:transcription by RNA polymerase II; IBA:GO_Central.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
SMART; SM00355; ZnF_C2H2; 8.
SUPFAM; SSF57667; SSF57667; 4.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 8.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 7.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00042};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00042};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00042}.
DOMAIN 321 348 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 349 376 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 581 608 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 609 636 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 641 668 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 1040 1067 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 1068 1095 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
SEQUENCE 1267 AA; 139541 MW; 45101DB1C0F47829 CRC64;
MCSIFRNRIN YRGTGGTRSG SGERERDRDR DRDRDRDRER DRDTLLAKEL DADSNNNGTE
PQMEAEAVPE SDTERETAEE RGEEQEPENS NEALDLSLIS SGGRESLPGS GHVSLEALQH
TKVAVAQFAA TAMAGNHQSA DLAMVQSTIF NVQRQHLMQL QLIQHLQSQL KRAEAAALGR
HSHSDEEEEE PEPEPEPKKQ PTNGLKEELE LEQGPESEQD QESRREENSK TDKRGTEDRK
AEPEGYQSMM CDISSSLASS IITNHDPPPA PNEPNCLEML QRRTEEVLDS ASQSLHAAQM
QEEYSEYASK EAQSRGEIFK HRCKYCGKIF GSYSALQIHL RSHTGERPFV CNVCGSKFTT
KGNLKVHYQR HTQIFPPMLL PPGVAPNVGH SGQGQVQGEQ YPIRLPFAPP VAPVGQEQHQ
NQVEEPEEIR QEIPVPQAED LSKPMVKEKE KSHSPVERVK TPKEVKTDAA LPSSEKPEKE
ISKPVVTSSR RNGSVRKRQT SAVSPPQEDR ERDLVEHLHI AKLVRRSSAS RESQPAEYSL
AQMERIIDKS WEDLIEIDKT SETSKLQQLV DNIENKLTDP NQCIFCQKVM SCRSSLQMHI
RTHTGERPFR CKICGRAFAT KGNLKAHMSI HKIKPPMRSQ FKCPVCHQKF SNGIILQQHI
RIHTMDDGSG GQGAPAANPG EAERLGIEDQ NSNKSLGTSD TLDFSTTISD HSGQRSESSQ
GGDFDEFMTM DSTDDSRDNS SAATATPHPL ERERDREKER ERRIPNDCSD ERSHSNPDLT
GGRSESGEMP AMDLSSPSSN SGRIFATGLA NGAAGGGSGN GGLPMLGMPM PPNLLLMAAA
REEMHALGHA HAKFPLLPFG PLGFMGLHPP PNVCNLCFKM LPSLAALESH LQSEHAKEPA
TGHAQRPQCS DAGSPYGAKL TLNPNLFAKK PPSSSSSSSG EKLPESSNPP FPAENPPATP
IKEDPDQEQL MVEEGASAGE GSGTGATSNY PQEAGDAEQS LMKMQLHAHR FPASPLDFQQ
ALMSAGPPTS SLDPPVNNKH FCHVCRRNFS SSSALQIHMR THTGDKPFQC NVCQKAFTTK
GNLKVHMGTH MWTNPTSRRG RRMSLELPMR PGPNSGQGHP GSSAEQEFMQ RRPELFFPYL
PPFFNGLPPK PGELSPGAFP NIPPPPFANG GKYPYPPGLL GFPGFLAQHP YILERRSSSK
SPTPEPAQSP ALREEEGSGN IWHPLSRIKV ENNQNESMGG FNEQEDHAET DATGGDNDES
ESRDAEK


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