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Ftz transcription factor 1, isoform C

 M9NFK2_DROME            Unreviewed;       803 AA.
M9NFK2;
26-JUN-2013, integrated into UniProtKB/TrEMBL.
26-JUN-2013, sequence version 1.
23-MAY-2018, entry version 46.
SubName: Full=Ftz transcription factor 1, isoform C {ECO:0000313|EMBL:AFH04495.1};
Name=ftz-f1 {ECO:0000313|EMBL:AFH04495.1,
ECO:0000313|FlyBase:FBgn0001078};
Synonyms=alphaFTZ-F1 {ECO:0000313|EMBL:AFH04495.1},
alphaftz-f1 {ECO:0000313|EMBL:AFH04495.1},
alphaFTZF1 {ECO:0000313|EMBL:AFH04495.1},
beta FTZ-F1 {ECO:0000313|EMBL:AFH04495.1},
beta Ftz-f1 {ECO:0000313|EMBL:AFH04495.1},
beta-FTZ-F1 {ECO:0000313|EMBL:AFH04495.1},
beta-Ftz-F1 {ECO:0000313|EMBL:AFH04495.1},
betaFTZ-F1 {ECO:0000313|EMBL:AFH04495.1},
betaFtz-F1 {ECO:0000313|EMBL:AFH04495.1},
betaFtz-f1 {ECO:0000313|EMBL:AFH04495.1},
betaftz-F1 {ECO:0000313|EMBL:AFH04495.1},
betaftz-f1 {ECO:0000313|EMBL:AFH04495.1},
betaFTZF1 {ECO:0000313|EMBL:AFH04495.1},
betaftzf1 {ECO:0000313|EMBL:AFH04495.1},
BFTZ-F1 {ECO:0000313|EMBL:AFH04495.1},
bFTZ-F1 {ECO:0000313|EMBL:AFH04495.1},
CG13378 {ECO:0000313|EMBL:AFH04495.1},
DEP1 {ECO:0000313|EMBL:AFH04495.1},
dFTZ-F1alpha {ECO:0000313|EMBL:AFH04495.1},
dFtz-F1alpha {ECO:0000313|EMBL:AFH04495.1},
Dmel\CG4059 {ECO:0000313|EMBL:AFH04495.1},
DmFTZ-F1 {ECO:0000313|EMBL:AFH04495.1},
dmFTZ-f1 {ECO:0000313|EMBL:AFH04495.1},
FIP1 {ECO:0000313|EMBL:AFH04495.1},
FTZ-F1 {ECO:0000313|EMBL:AFH04495.1},
Ftz-F1 {ECO:0000313|EMBL:AFH04495.1},
Ftz-f1 {ECO:0000313|EMBL:AFH04495.1},
ftz-F1 {ECO:0000313|EMBL:AFH04495.1},
FTZ-F1A {ECO:0000313|EMBL:AFH04495.1},
FTZ-F1alpha {ECO:0000313|EMBL:AFH04495.1},
ftz-f1alpha {ECO:0000313|EMBL:AFH04495.1},
FTZ-Fl {ECO:0000313|EMBL:AFH04495.1},
FTZF1 {ECO:0000313|EMBL:AFH04495.1},
ftzf1 {ECO:0000313|EMBL:AFH04495.1},
FTZf1alpha {ECO:0000313|EMBL:AFH04495.1},
l(3)03649 {ECO:0000313|EMBL:AFH04495.1},
NR5A3 {ECO:0000313|EMBL:AFH04495.1};
ORFNames=CG4059 {ECO:0000313|EMBL:AFH04495.1,
ECO:0000313|FlyBase:FBgn0001078},
Dmel_CG4059 {ECO:0000313|EMBL:AFH04495.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AFH04495.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AFH04495.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AFH04495.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AFH04495.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AFH04495.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AFH04495.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AFH04495.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AFH04495.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:AFH04495.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-
ProRule:PRU00407, ECO:0000256|RuleBase:RU004334,
ECO:0000256|SAAS:SAAS01037405}.
-!- SIMILARITY: Belongs to the nuclear hormone receptor family.
{ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS01037406}.
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EMBL; AE014296; AFH04495.1; -; Genomic_DNA.
RefSeq; NP_001246824.1; NM_001259895.2.
RefSeq; NP_730359.1; NM_168775.2.
UniGene; Dm.995; -.
ProteinModelPortal; M9NFK2; -.
SMR; M9NFK2; -.
EnsemblMetazoa; FBtr0075087; FBpp0074854; FBgn0001078.
EnsemblMetazoa; FBtr0304627; FBpp0293169; FBgn0001078.
GeneID; 40045; -.
CTD; 40045; -.
FlyBase; FBgn0001078; ftz-f1.
eggNOG; KOG4218; Eukaryota.
eggNOG; ENOG410YWC2; LUCA.
OMA; LQEPAKG; -.
OrthoDB; EOG091G06RK; -.
ChiTaRS; ftz-f1; fly.
GenomeRNAi; 40045; -.
Proteomes; UP000000803; Chromosome 3L.
Bgee; FBgn0001078; -.
ExpressionAtlas; M9NFK2; baseline and differential.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003700; F:DNA binding transcription factor activity; IEA:InterPro.
GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
GO; GO:0003707; F:steroid hormone receptor activity; IEA:InterPro.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
Gene3D; 3.30.50.10; -; 1.
InterPro; IPR035500; NHR_like_dom_sf.
InterPro; IPR016355; NR5_fam.
InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd.
InterPro; IPR001723; Nuclear_hrmn_rcpt.
InterPro; IPR001628; Znf_hrmn_rcpt.
InterPro; IPR013088; Znf_NHR/GATA.
PANTHER; PTHR24086; PTHR24086; 2.
Pfam; PF00104; Hormone_recep; 1.
Pfam; PF00105; zf-C4; 1.
PRINTS; PR00398; STRDHORMONER.
PRINTS; PR00047; STROIDFINGER.
SMART; SM00430; HOLI; 1.
SMART; SM00399; ZnF_C4; 1.
SUPFAM; SSF48508; SSF48508; 2.
PROSITE; PS51843; NR_LBD; 1.
PROSITE; PS00031; NUCLEAR_REC_DBD_1; 1.
PROSITE; PS51030; NUCLEAR_REC_DBD_2; 1.
3: Inferred from homology;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00407,
ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS00517091};
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00407,
ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS00517125};
Nucleus {ECO:0000256|PROSITE-ProRule:PRU00407,
ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS01037386};
Receptor {ECO:0000256|RuleBase:RU004334,
ECO:0000256|SAAS:SAAS01037471};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Transcription {ECO:0000256|PROSITE-ProRule:PRU00407,
ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS01037387};
Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00407,
ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS01037387};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00407,
ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS00517125};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00407,
ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS00517125}.
DOMAIN 281 356 Nuclear receptor.
{ECO:0000259|PROSITE:PS51030}.
DOMAIN 568 800 NR LBD. {ECO:0000259|PROSITE:PS51843}.
DNA_BIND 281 356 Nuclear receptor. {ECO:0000256|PROSITE-
ProRule:PRU00407}.
COILED 118 138 {ECO:0000256|SAM:Coils}.
SEQUENCE 803 AA; 85900 MW; F20BE9D5EC07D015 CRC64;
MLLEMDQQQA TVQFISSLNI SPFSMQLEQQ QQPSSPALAA GGNSSNNAAS GSNNNSASGN
NTSSSSNNNN NNNNDNDAHV LTKFEHEYNA YTLQLAGGGG SGSGNQQHHS NHSNHGNHHQ
QQQQQQQQQQ QHQQQQQEHY QQQQQQNIAN NANQFNSSSY SYIYNFDSQY IFPTGYQDTT
SSHSQQSGGG GGGGGGNLLN GSSGGSSAGG GYMLLPQAAS SSGNNGNPNA GHMSSGSVGN
GSGGAGNGGA GGNSGPGNPM GGTSATPGHG GEVIDFKHLF EELCPVCGDK VSGYHYGLLT
CESCKGFFKR TVQNKKVYTC VAERSCHIDK TQRKRCPYCR FQKCLEVGMK LEAVRADRMR
GGRNKFGPMY KRDRARKLQV MRQRQLALQA LRNSMGPDIK PTPISPGYQQ AYPNMNIKQE
IQIPQVSSLT QSPDSSPSPI AIALGQVNAS TGGVIATPMN AGTGGSGGGG LNGPSSVGNG
NSSNGSSNGN NNSSTGNGTS GGGGGNNAGG GGGGTNSNDG LHRNGGNGNS SCHEAGIGSL
QNTADSKLCF DSGTHPSSTA DALIEPLRVS PMIREFVQSI DDREWQTQLF ALLQKQTYNQ
VEVDLFELMC KVLDQNLFSQ VDWARNTVFF KDLKVDDQMK LLQHSWSDML VLDHLHHRIH
NGLPDETQLN NGQVFNLMSL GLLGVPQLGD YFNELQNKLQ DLKFDMGDYV CMKFLILLNP
SVRGIVNRKT VSEGHDNVQA ALLDYTLTCY PSVNDKFRGL VNILPEIHAM AVRGEDHLYT
KHCAGSAPTQ TLLMEMLHAK RKG


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