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GATA transcription factor 2 (AtGATA-2)

 GATA2_ARATH             Reviewed;         264 AA.
O49741;
26-APR-2005, integrated into UniProtKB/Swiss-Prot.
01-JUN-1998, sequence version 1.
23-MAY-2018, entry version 114.
RecName: Full=GATA transcription factor 2;
Short=AtGATA-2;
Name=GATA2; OrderedLocusNames=At2g45050; ORFNames=T14P1.14;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
PubMed=12139008; DOI=10.1023/A:1016062325584;
Teakle G.R., Manfield I.W., Graham J.F., Gilmartin P.M.;
"Arabidopsis thaliana GATA factors: organisation, expression and DNA-
binding characteristics.";
Plant Mol. Biol. 50:43-57(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
GENE FAMILY ORGANIZATION.
PubMed=15084732; DOI=10.1104/pp.103.037788;
Reyes J.C., Muro-Pastor M.I., Florencio F.J.;
"The GATA family of transcription factors in Arabidopsis and rice.";
Plant Physiol. 134:1718-1732(2004).
-!- FUNCTION: Transcriptional activator that specifically binds 5'-
GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved
in the regulation of some light-responsive genes.
{ECO:0000269|PubMed:12139008}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in
flowers and leaves, and to a lower extent in stems.
{ECO:0000269|PubMed:12139008}.
-!- SIMILARITY: Belongs to the type IV zinc-finger family. Class A
subfamily. {ECO:0000305}.
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EMBL; Y13649; CAA74000.1; -; mRNA.
EMBL; CP002685; AEC10500.1; -; Genomic_DNA.
EMBL; BT000921; AAN41321.1; -; mRNA.
PIR; T52104; T52104.
RefSeq; NP_182031.1; NM_130069.3.
UniGene; At.216; -.
ProteinModelPortal; O49741; -.
SMR; O49741; -.
STRING; 3702.AT2G45050.1; -.
PaxDb; O49741; -.
PRIDE; O49741; -.
EnsemblPlants; AT2G45050.1; AT2G45050.1; AT2G45050.
GeneID; 819112; -.
Gramene; AT2G45050.1; AT2G45050.1; AT2G45050.
KEGG; ath:AT2G45050; -.
Araport; AT2G45050; -.
TAIR; locus:2055589; AT2G45050.
eggNOG; KOG1601; Eukaryota.
eggNOG; COG5641; LUCA.
HOGENOM; HOG000238267; -.
InParanoid; O49741; -.
OMA; SADHHSF; -.
OrthoDB; EOG09360NF6; -.
PhylomeDB; O49741; -.
PRO; PR:O49741; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; O49741; baseline and differential.
Genevisible; O49741; AT.
GO; GO:0005634; C:nucleus; IBA:GO_Central.
GO; GO:0005667; C:transcription factor complex; IBA:GO_Central.
GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
GO; GO:0003700; F:DNA binding transcription factor activity; IDA:TAIR.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0001085; F:RNA polymerase II transcription factor binding; IBA:GO_Central.
GO; GO:0001228; F:transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0009416; P:response to light stimulus; IEP:TAIR.
Gene3D; 3.30.50.10; -; 1.
InterPro; IPR016679; TF_GATA_pln.
InterPro; IPR000679; Znf_GATA.
InterPro; IPR013088; Znf_NHR/GATA.
Pfam; PF00320; GATA; 1.
PIRSF; PIRSF016992; TF_GATA_plant; 1.
SMART; SM00401; ZnF_GATA; 1.
PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
2: Evidence at transcript level;
Activator; Complete proteome; DNA-binding; Metal-binding; Nucleus;
Reference proteome; Transcription; Transcription regulation; Zinc;
Zinc-finger.
CHAIN 1 264 GATA transcription factor 2.
/FTId=PRO_0000083431.
ZN_FING 175 229 GATA-type. {ECO:0000255|PROSITE-
ProRule:PRU00094}.
MOTIF 114 121 Nuclear localization signal.
{ECO:0000255}.
COMPBIAS 52 67 His-rich.
COMPBIAS 156 163 Poly-Gly.
COMPBIAS 258 262 Poly-His.
SEQUENCE 264 AA; 28864 MW; 7ADB367D15B5A776 CRC64;
MDVYGLSSPD LLRIDDLLDF SNEDIFSASS SGGSTAATSS SSFPPPQNPS FHHHHLPSSA
DHHSFLHDIC VPSDDAAHLE WLSQFVDDSF ADFPANPLGG TMTSVKTETS FPGKPRSKRS
RAPAPFAGTW SPMPLESEHQ QLHSAAKFKP KKEQSGGGGG GGGRHQSSSS ETTEGGGMRR
CTHCASEKTP QWRTGPLGPK TLCNACGVRF KSGRLVPEYR PASSPTFVLT QHSNSHRKVM
ELRRQKEVMR QPQQVQLHHH HHPF


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