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Gag polyprotein

 A0A1L5K148_9HIV1        Unreviewed;       496 AA.
A0A1L5K148;
15-MAR-2017, integrated into UniProtKB/TrEMBL.
15-MAR-2017, sequence version 1.
28-MAR-2018, entry version 10.
RecName: Full=Gag polyprotein {ECO:0000256|RuleBase:RU004487, ECO:0000256|SAAS:SAAS00998370};
Name=gag {ECO:0000313|EMBL:APO21875.1};
Human immunodeficiency virus 1.
Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae;
Lentivirus; Primate lentivirus group.
NCBI_TaxID=11676 {ECO:0000313|EMBL:APO21875.1};
NCBI_TaxID=9606; Homo sapiens (Human).
[1] {ECO:0000313|EMBL:APO21875.1}
NUCLEOTIDE SEQUENCE.
Bui J.K., Sobolewski M.D., Keele B.F., Spindler J., Musick A.,
Wiegand A., Luke B.T., Shao W., Hughes S.H., Coffin J.M.,
Kearney M.F., Mellors J.W.;
"Proviruses with Identical Sequences Comprise a Large Fraction of the
Replication-Competent HIV Reservoir.";
Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:AQY58856.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Donor4.F6.2.5.p1a10 {ECO:0000313|EMBL:AQY58892.1},
Donor4.F6.2.5.p1a17 {ECO:0000313|EMBL:AQY58886.1},
Donor4.F6.2.5.p1a24 {ECO:0000313|EMBL:AQY58883.1},
Donor4.F6.2.5.p1a5 {ECO:0000313|EMBL:AQY58877.1},
Donor4.F6.2.5.p1a6 {ECO:0000313|EMBL:AQY58895.1},
Donor4.F6.2.5.p1b20 {ECO:0000313|EMBL:AQY58889.1},
Donor4.F6.2.5.p1b7 {ECO:0000313|EMBL:AQY58898.1},
Donor4.F6.2.5.p3a13 {ECO:0000313|EMBL:AQY58904.1},
Donor4.F6.2.5.p3a14 {ECO:0000313|EMBL:AQY58910.1},
Donor4.F6.2.5.p3a15 {ECO:0000313|EMBL:AQY58907.1},
Donor4.F6.2.5.p3b4 {ECO:0000313|EMBL:AQY58913.1},
Donor4.F6.2.5.p3d2 {ECO:0000313|EMBL:AQY58901.1},
Donor4.F6.2.p5i11 {ECO:0000313|EMBL:AQY58865.1},
Donor4.F6.2.p5i16 {ECO:0000313|EMBL:AQY58871.1},
Donor4.F6.2.p5i21 {ECO:0000313|EMBL:AQY58856.1},
Donor4.F6.2.p5i22 {ECO:0000313|EMBL:AQY58862.1}, and
Donor4.F6.2.p5j3_1DP {ECO:0000313|EMBL:AQY58868.1};
Bui J.K., Sobolewski M.D., Keele B.F., Spindler J., Musick A.,
Wiegand A., Luke B.T., Shao W., Hughes S.H., Coffin J.M.,
Kearney M.F., Mellors J.W.;
"Clonal Proviruses Comprise a Large Fraction of the Replication-
Competent HIV Reservoir.";
Submitted (MAR-2017) to the EMBL/GenBank/DDBJ databases.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000256|RuleBase:RU004487}. Host
nucleus {ECO:0000256|RuleBase:RU004487}. Host cytoplasm
{ECO:0000256|RuleBase:RU004487}.
-!- SUBCELLULAR LOCATION: Host cytoplasm
{ECO:0000256|RuleBase:RU004487, ECO:0000256|SAAS:SAAS00558641}.
Host nucleus {ECO:0000256|RuleBase:RU004487,
ECO:0000256|SAAS:SAAS00558562}. Virion
{ECO:0000256|RuleBase:RU004487}.
-!- PTM: Gag-Pol polyprotein: Specific enzymatic cleavages by the
viral protease yield mature proteins.
{ECO:0000256|RuleBase:RU004487}.
-!- SIMILARITY: Belongs to the primate lentivirus group gag
polyprotein family. {ECO:0000256|SAAS:SAAS00558534}.
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EMBL; KY057562; APO21871.1; -; Genomic_RNA.
EMBL; KY057563; APO21873.1; -; Genomic_RNA.
EMBL; KY057564; APO21875.1; -; Genomic_RNA.
EMBL; KY057565; APO21877.1; -; Genomic_RNA.
EMBL; KY057568; APO21882.1; -; Genomic_RNA.
EMBL; KY748485; AQY58856.1; -; Genomic_RNA.
EMBL; KY748487; AQY58862.1; -; Genomic_RNA.
EMBL; KY748488; AQY58865.1; -; Genomic_RNA.
EMBL; KY748489; AQY58868.1; -; Genomic_RNA.
EMBL; KY748490; AQY58871.1; -; Genomic_RNA.
EMBL; KY748492; AQY58877.1; -; Genomic_RNA.
EMBL; KY748494; AQY58883.1; -; Genomic_RNA.
EMBL; KY748495; AQY58886.1; -; Genomic_RNA.
EMBL; KY748496; AQY58889.1; -; Genomic_RNA.
EMBL; KY748497; AQY58892.1; -; Genomic_RNA.
EMBL; KY748498; AQY58895.1; -; Genomic_RNA.
EMBL; KY748499; AQY58898.1; -; Genomic_RNA.
EMBL; KY748500; AQY58901.1; -; Genomic_RNA.
EMBL; KY748501; AQY58904.1; -; Genomic_RNA.
EMBL; KY748502; AQY58907.1; -; Genomic_RNA.
EMBL; KY748503; AQY58910.1; -; Genomic_RNA.
EMBL; KY748504; AQY58913.1; -; Genomic_RNA.
GO; GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0039702; P:viral budding via host ESCRT complex; IEA:UniProtKB-KW.
Gene3D; 1.10.1200.30; -; 1.
Gene3D; 1.10.150.90; -; 1.
Gene3D; 1.10.375.10; -; 1.
InterPro; IPR000721; Gag_p24.
InterPro; IPR014817; Gag_p6.
InterPro; IPR000071; Lentvrl_matrix_N.
InterPro; IPR012344; Matrix_HIV/RSV_N.
InterPro; IPR008916; Retrov_capsid_C.
InterPro; IPR008919; Retrov_capsid_N.
InterPro; IPR010999; Retrovr_matrix.
InterPro; IPR001878; Znf_CCHC.
InterPro; IPR036875; Znf_CCHC_sf.
Pfam; PF00540; Gag_p17; 1.
Pfam; PF00607; Gag_p24; 1.
Pfam; PF08705; Gag_p6; 1.
Pfam; PF00098; zf-CCHC; 2.
PRINTS; PR00234; HIV1MATRIX.
SMART; SM00343; ZnF_C2HC; 2.
SUPFAM; SSF47836; SSF47836; 1.
SUPFAM; SSF47943; SSF47943; 1.
SUPFAM; SSF57756; SSF57756; 1.
PROSITE; PS50158; ZF_CCHC; 2.
3: Inferred from homology;
Capsid protein {ECO:0000256|RuleBase:RU004487,
ECO:0000256|SAAS:SAAS00132057}; Coiled coil {ECO:0000256|SAM:Coils};
Host cytoplasm {ECO:0000256|RuleBase:RU004487,
ECO:0000256|SAAS:SAAS00053376};
Host nucleus {ECO:0000256|RuleBase:RU004487,
ECO:0000256|SAAS:SAAS00053394};
Host-virus interaction {ECO:0000256|SAAS:SAAS00994355};
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047,
ECO:0000256|RuleBase:RU004487, ECO:0000256|SAAS:SAAS01024440};
Repeat {ECO:0000256|SAAS:SAAS00994306};
Ribosomal frameshifting {ECO:0000256|SAAS:SAAS00053419};
RNA-binding {ECO:0000256|RuleBase:RU004487,
ECO:0000256|SAAS:SAAS00053246};
Viral budding {ECO:0000256|SAAS:SAAS00994355};
Viral budding via the host ESCRT complexes
{ECO:0000256|SAAS:SAAS00994355};
Viral nucleoprotein {ECO:0000256|RuleBase:RU004487};
Viral release from host cell {ECO:0000256|SAAS:SAAS00994355};
Virion {ECO:0000256|RuleBase:RU004487, ECO:0000256|SAAS:SAAS00132057};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00047,
ECO:0000256|RuleBase:RU004487, ECO:0000256|SAAS:SAAS01024440};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047,
ECO:0000256|RuleBase:RU004487, ECO:0000256|SAAS:SAAS01024440}.
DOMAIN 390 405 CCHC-type. {ECO:0000259|PROSITE:PS50158}.
DOMAIN 412 427 CCHC-type. {ECO:0000259|PROSITE:PS50158}.
COILED 87 121 {ECO:0000256|SAM:Coils}.
SEQUENCE 496 AA; 55375 MW; 649D8DDFA692DB72 CRC64;
MGARASVLSG GSLDKWEKIR LRPGGKKKYK LKHIVWASRE LERFAVNPGL LETSEGCRKI
LGQLHPSLQT GSEELKSLYN TVAVLYCVHQ NIEVRDTKEA LDKIEEEQNK SKKKAQQAAA
DTGNSSQVSQ NYPIVQNLQG QMVHQALSPR TLNAWVKVIE EKAFSPEVIP MFSALSEGAT
PQDLNTMLNT VGGHQAAMQM LKETINEEAA EWDRLHPVHA GPIAPGQMRE PRGSDIAGTT
STLQEQIAWM TNNPPIPVGE IYKRWIILGL NKIVRMYSPV SILDIRQGPK EPFRDYVDRF
YKTLRAEQAT QEVKNWMTET LLVQNANPDC KTILKALGPA ATLEEMMTAC QGVGGPGHKA
RVLAEAMSQV NPPTIMMQRG HFKNQRKTVK CFNCGKEGHI ARNCRAPRKK GCWKCGKEGH
QMKDCTERQA NFLGKIWPSH KGRPGNFLQN RPEPTAPPEE SCRFGEETTT PPQKQEPIDK
GLYPTASLRS LFGNDP


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