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Ganglioside-induced differentiation-associated protein 1 (GDAP1)

 GDAP1_BOVIN             Reviewed;         358 AA.
A6QQZ0;
05-SEP-2012, integrated into UniProtKB/Swiss-Prot.
21-AUG-2007, sequence version 1.
28-MAR-2018, entry version 65.
RecName: Full=Ganglioside-induced differentiation-associated protein 1;
Short=GDAP1;
Name=GDAP1;
Bos taurus (Bovine).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia;
Pecora; Bovidae; Bovinae; Bos.
NCBI_TaxID=9913;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Hereford;
PubMed=19393038; DOI=10.1186/gb-2009-10-4-r42;
Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C.,
Puiu D., Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S.,
Marcais G., Roberts M., Subramanian P., Yorke J.A., Salzberg S.L.;
"A whole-genome assembly of the domestic cow, Bos taurus.";
Genome Biol. 10:R42.01-R42.10(2009).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=Hereford; TISSUE=Hypothalamus;
NIH - Mammalian Gene Collection (MGC) project;
Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Regulates the mitochondrial network by promoting
mitochondrial fission. {ECO:0000250}.
-!- SUBUNIT: Homodimer. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Mitochondrion outer membrane
{ECO:0000250|UniProtKB:Q8TB36}; Multi-pass membrane protein
{ECO:0000250|UniProtKB:Q8TB36}. Cytoplasm
{ECO:0000250|UniProtKB:O88741}.
-!- PTM: Ubiquitinated by PRKN during mitophagy, leading to its
degradation and enhancement of mitophagy. Deubiquitinated by
USP30. {ECO:0000250|UniProtKB:Q8TB36}.
-!- SIMILARITY: Belongs to the GST superfamily. {ECO:0000305}.
-!- CAUTION: While belonging to the GST superfamily, it lacks
glutathione transferase activity. {ECO:0000305}.
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EMBL; DAAA02038855; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC150048; AAI50049.1; -; mRNA.
RefSeq; NP_001094692.1; NM_001101222.1.
UniGene; Bt.9350; -.
ProteinModelPortal; A6QQZ0; -.
STRING; 9913.ENSBTAP00000016739; -.
PaxDb; A6QQZ0; -.
Ensembl; ENSBTAT00000016739; ENSBTAP00000016739; ENSBTAG00000012608.
GeneID; 613472; -.
KEGG; bta:613472; -.
CTD; 54332; -.
VGNC; VGNC:29295; GDAP1.
eggNOG; KOG4420; Eukaryota.
eggNOG; ENOG410YE2J; LUCA.
GeneTree; ENSGT00510000046788; -.
HOGENOM; HOG000231002; -.
HOVERGEN; HBG051717; -.
InParanoid; A6QQZ0; -.
KO; K22077; -.
OMA; GHQPWLC; -.
OrthoDB; EOG091G0BAC; -.
TreeFam; TF327072; -.
Proteomes; UP000009136; Chromosome 14.
Bgee; ENSBTAG00000012608; -.
GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
GO; GO:0005829; C:cytosol; IEA:Ensembl.
GO; GO:0031307; C:integral component of mitochondrial outer membrane; ISS:UniProtKB.
GO; GO:0004364; F:glutathione transferase activity; IBA:GO_Central.
GO; GO:0006749; P:glutathione metabolic process; IBA:GO_Central.
GO; GO:0000266; P:mitochondrial fission; ISS:UniProtKB.
GO; GO:0008053; P:mitochondrial fusion; IEA:Ensembl.
GO; GO:0006626; P:protein targeting to mitochondrion; ISS:UniProtKB.
GO; GO:0032526; P:response to retinoic acid; IEA:Ensembl.
InterPro; IPR034336; GDAP1.
InterPro; IPR010987; Glutathione-S-Trfase_C-like.
InterPro; IPR036282; Glutathione-S-Trfase_C_sf.
InterPro; IPR004045; Glutathione_S-Trfase_N.
InterPro; IPR036249; Thioredoxin-like_sf.
PANTHER; PTHR44188; PTHR44188; 1.
Pfam; PF13417; GST_N_3; 1.
SUPFAM; SSF47616; SSF47616; 1.
SUPFAM; SSF52833; SSF52833; 1.
PROSITE; PS50405; GST_CTER; 1.
PROSITE; PS50404; GST_NTER; 1.
2: Evidence at transcript level;
Acetylation; Coiled coil; Complete proteome; Cytoplasm;
Isopeptide bond; Membrane; Mitochondrion;
Mitochondrion outer membrane; Reference proteome; Transmembrane;
Transmembrane helix; Ubl conjugation.
CHAIN 1 358 Ganglioside-induced differentiation-
associated protein 1.
/FTId=PRO_0000418810.
TRANSMEM 292 312 Helical. {ECO:0000255}.
TRANSMEM 320 340 Helical. {ECO:0000255}.
DOMAIN 24 105 GST N-terminal.
DOMAIN 153 309 GST C-terminal.
REGION 320 358 Required for mitochondrial localization.
{ECO:0000250}.
MOD_RES 203 203 N6-acetyllysine; alternate.
{ECO:0000250|UniProtKB:Q8TB36}.
CROSSLNK 50 50 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in ubiquitin).
{ECO:0000250|UniProtKB:Q8TB36}.
CROSSLNK 172 172 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in ubiquitin).
{ECO:0000250|UniProtKB:Q8TB36}.
CROSSLNK 173 173 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in ubiquitin).
{ECO:0000250|UniProtKB:Q8TB36}.
CROSSLNK 188 188 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in ubiquitin).
{ECO:0000250|UniProtKB:Q8TB36}.
CROSSLNK 190 190 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in ubiquitin).
{ECO:0000250|UniProtKB:Q8TB36}.
CROSSLNK 203 203 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in ubiquitin);
alternate.
{ECO:0000250|UniProtKB:Q8TB36}.
CROSSLNK 206 206 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in ubiquitin).
{ECO:0000250|UniProtKB:Q8TB36}.
CROSSLNK 207 207 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in ubiquitin).
{ECO:0000250|UniProtKB:Q8TB36}.
CROSSLNK 214 214 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in ubiquitin).
{ECO:0000250|UniProtKB:Q8TB36}.
SEQUENCE 358 AA; 41202 MW; 01806D1D09891F23 CRC64;
MARRQDEQRG GAPLIAEGKS DAEVKLILYH WTHSFSSQKV RLVIAEKALK CEEHDVSLPL
SEHNEPWFMR LNSTGEVPVL IHGENIICEA TQIIDYLEQT FLDEKTPRLM PDKGSMYYPR
VQHYRELLDS LPMDAYTHGC ILHPELTVDS MIPAYATTRI RSQIGNTESE LKKLAEENPD
LQEAYIAKQK RLKSKLLDHD NVKYLKKILD ELEKVLDQVE TELQRRNEET PEEGRQPWLC
GESFTLADVS LAVTLHRLKF LGFARRNWGN GKRPNLETYY ERVLKRKTFN KVLGHVNNIL
ISAVLPTAFR VAKKRAPKVL GTTLVVGLLA GMGYFAFMLF RKRLGSMILA LRPRPNYF


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