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Genome polyprotein

 A0A067XIW5_9POTV        Unreviewed;      3062 AA.
A0A067XIW5;
01-OCT-2014, integrated into UniProtKB/TrEMBL.
01-OCT-2014, sequence version 1.
25-OCT-2017, entry version 21.
RecName: Full=Genome polyprotein {ECO:0000256|SAAS:SAAS00368684};
Pennisetum mosaic virus.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Potyviridae; Potyvirus.
NCBI_TaxID=221262 {ECO:0000313|EMBL:AGF29579.1};
[1] {ECO:0000313|EMBL:AGF29579.1}
NUCLEOTIDE SEQUENCE.
STRAIN=CD8 {ECO:0000313|EMBL:AGF29579.1};
Cui X.W., Gao B., Li X.D.;
"Molecular population genetics of Pennisetum mosaic virus genome.";
Submitted (MAY-2012) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Helper component proteinase: required for aphid
transmission and also has proteolytic activity. Only cleaves a
Gly-Gly dipeptide at its own C-terminus. Interacts with virions
and aphid stylets. Acts as a suppressor of RNA-mediated gene
silencing, also known as post-transcriptional gene silencing
(PTGS), a mechanism of plant viral defense that limits the
accumulation of viral RNAs. May have RNA-binding activity.
{ECO:0000256|SAAS:SAAS00890155}.
-!- CATALYTIC ACTIVITY: Hydrolyzes a Gly-|-Gly bond at its own C-
terminus, commonly in the sequence -Tyr-Xaa-Val-Gly-|-Gly, in the
processing of the potyviral polyprotein.
{ECO:0000256|SAAS:SAAS00336250}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|SAAS:SAAS00383097}.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000256|SAAS:SAAS00560857}.
-!- SIMILARITY: Belongs to the potyviridae genome polyprotein family.
{ECO:0000256|RuleBase:RU003351}.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|PROSITE-ProRule:PRU00448}.
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EMBL; JX070154; AGF29579.1; -; Genomic_RNA.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.
GO; GO:0005509; F:calcium ion binding; IEA:InterPro.
GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
GO; GO:0003723; F:RNA binding; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0018144; P:RNA-protein covalent cross-linking; IEA:InterPro.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
InterPro; IPR011492; DEAD_Flavivir.
InterPro; IPR002048; EF_hand_dom.
InterPro; IPR001456; HC-pro.
InterPro; IPR031159; HC_PRO_CPD_dom.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR001650; Helicase_C.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR002540; Pept_S30_P1_potyvir.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR001592; Poty_coat.
InterPro; IPR001730; Potyv_NIa-pro_dom.
InterPro; IPR013648; PP_Potyviridae.
InterPro; IPR001205; RNA-dir_pol_C.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
Pfam; PF07652; Flavi_DEAD; 1.
Pfam; PF00271; Helicase_C; 1.
Pfam; PF00863; Peptidase_C4; 1.
Pfam; PF00851; Peptidase_C6; 1.
Pfam; PF01577; Peptidase_S30; 1.
Pfam; PF00767; Poty_coat; 1.
Pfam; PF08440; Poty_PP; 1.
Pfam; PF00680; RdRP_1; 1.
PRINTS; PR00966; NIAPOTYPTASE.
SMART; SM00487; DEXDc; 1.
SMART; SM00490; HELICc; 1.
SUPFAM; SSF50494; SSF50494; 1.
SUPFAM; SSF52540; SSF52540; 2.
PROSITE; PS50222; EF_HAND_2; 1.
PROSITE; PS51744; HC_PRO_CPD; 1.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
PROSITE; PS51194; HELICASE_CTER; 1.
PROSITE; PS51436; POTYVIRUS_NIA_PRO; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|SAAS:SAAS00058020};
Capsid protein {ECO:0000256|SAAS:SAAS00057850};
Coiled coil {ECO:0000256|SAM:Coils};
Helicase {ECO:0000256|SAAS:SAAS00058020};
Hydrolase {ECO:0000256|SAAS:SAAS00058020,
ECO:0000256|SAAS:SAAS00494788}; Membrane {ECO:0000256|SAM:Phobius};
Nucleotide-binding {ECO:0000256|SAAS:SAAS00058020};
Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00510600};
Protease {ECO:0000256|SAAS:SAAS00494788};
RNA-directed RNA polymerase {ECO:0000256|SAAS:SAAS00510600};
Suppressor of RNA silencing {ECO:0000256|SAAS:SAAS00890154};
Transferase {ECO:0000256|SAAS:SAAS00510600};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius};
Viral RNA replication {ECO:0000256|SAAS:SAAS00664279};
Virion {ECO:0000256|SAAS:SAAS00057850}.
TRANSMEM 961 982 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 581 703 Peptidase C6.
{ECO:0000259|PROSITE:PS51744}.
DOMAIN 999 1034 EF-hand. {ECO:0000259|PROSITE:PS50222}.
DOMAIN 1192 1344 Helicase ATP-binding.
{ECO:0000259|PROSITE:PS51192}.
DOMAIN 1363 1522 Helicase C-terminal.
{ECO:0000259|PROSITE:PS51194}.
DOMAIN 1998 2216 Peptidase C4.
{ECO:0000259|PROSITE:PS51436}.
DOMAIN 2482 2606 RdRp catalytic.
{ECO:0000259|PROSITE:PS50507}.
COILED 987 1014 {ECO:0000256|SAM:Coils}.
COILED 2776 2818 {ECO:0000256|SAM:Coils}.
ACT_SITE 589 589 For helper component proteinase activity.
{ECO:0000256|PROSITE-ProRule:PRU01080}.
ACT_SITE 662 662 For helper component proteinase activity.
{ECO:0000256|PROSITE-ProRule:PRU01080}.
SEQUENCE 3062 AA; 349330 MW; C36827C40082C3F7 CRC64;
MDGSWAMVAS RKRPNLDNPY IVRKVMERYA AKHQEYDAER AIAKNLRILK RTHPGTDFTL
PSAQVLVEQP REEPKPKIRQ VWVKVADRNV PNEVVKINQT HIKKKVEPQI AKLDVASLTS
QILKMKQGTN CEVTIIGRKR NHVTQLTAVK RSKRLHLHCR TLHEDGKFKR RDTNIPAVWL
PTLENICKKF DTMPRKEFAT LHKGDSGLTC FHYNELFIIR GRYEGKLVNS LTVESNILDI
EHYADPQANA FWKGYTDAYV KNRGISTTHT EHVPTVNLEE CGKRAALMEI LFHSTFKITC
KICNTDDLEL ADDEFGEKLY KLIQKMEESE KEYLEKDQKL KRMMAFIKER SKPKFEHLPI
TWQVAETVGH YHDNQAKQIM TINESLIKVS TLSSEQATKA SHALLELSRW FKNRKESSKE
DTLKTFRNKV SPKSTINPAL MCDNQLDANG NFLWGKREYH AKRFFTSYFD QVDPAGEYEK
HIIRYNPHGS RKLAIGKLII PLNFPKIRES FVGIPIEKQP LSKACLSKID NIYSYPCCCV
TTEFGEPYYS EIIPPTKGHI TIGNSVDPKI VDLPNTDPPS MYIAKDGYCY LNIFLAAMIN
VNEDSAKDYT KFIRDELIER LGKWPKMKDV ATACYILSVM YPEVKNAELP QILVDHENKT
MHVVDSYGSL STGFHTLKAN TVNQLIRMQY DSMDSEMRDY IVGGGITKKT FSENLSLLAK
NMFKPEIMRK LMEEEPFLII MAVASPTVLI AMYNNNYIEE AMTMWITRNQ GIASIFATLE
ALAKETSKAE LLIQQMNILE KASSQLRFAV SGISHIDPMK KLLWSQLEAM TTRAEMNQEL
REEGYALYDN RLYSLVEKIY IDQLNHAWAE LSFYGKLREI WRVYKHKKYY KPSLTLKESV
GLDGVYNISV THLVSSSAQK VRTRVNSITT KLHRSACDKW EAARLRAIRT AYWLVPDIFR
LIHILLVLSV LTSIANTILV ILQDYKKLQK QVRMEEYEKE LNEVRQIHAK LDKIHNGDMT
KEEFIDYIRD NHERLLEAAI DLTGTGVIHE GKSKLETNLE QAMAVGTLIT MMFDPNRSDA
VYKVLNKMKT VINTYEQNET FPRFDFTKMF KQGVVHQSID VDDPLTLDTD KKMTVDFCTE
QDLPASTFSN DVTFEDWWSN QLENNRTVPH YRLGGEFLEF TRANAAQVSL DIIHRRDDKE
FLLRGAVGSG KSTGLPYHLS LRGKVLLLEP TRPLAENVCR QLQGPPFNVS PSLQMRGLSS
FGSTPISIMT TGFALHMLAN NPDRLEHYDF IIFDKCHIME APAMALYCLL KEYEYKGKII
KVSATPPGRE CEFSTQHPVD LQVCEHLTQN QFVMELGTGS KADATKYGDN ILVYVASYGD
VDSLSRMLAE KHYSVIKVDG RTMKQNVNGI NPNGTSTKKC FVVATNIIEN GVTLDVDVVV
DFGLKVTAEL DVDNRAVMYR KTNISYGERI QRLGRVGRHK PGTAIRIGAT TKGVQEIPTM
IATEAAFLCF TYGLKVITHN VSTSHLSKCT IKQARTMMQF ELSPFIMAEL VKYDGSMHPE
IHEKLKKYKL RESTIMLRSN AIPYTNVHHW MSVKDYNKLG YDLDLGEYIK LPFYVRGVPD
KLYSDIYDTI IKYQSNSCYG RLSSACAGKV AYTLKTDPYS LPRTIAIINT LLAEEHKKRD
HYLAMSSNPS SSHAFSLSGV VSMLSSRYMR DHTKGNIEKL IRVRDQLLEF QGTSQQFKTP
EDLIEYGALN TVIHQGVDEI SECLQLQGRW NAPLIQRDLM IAAGVFAGGG LMLWFMFLRW
ARQDVTHQGR SKRSKQKLRF REARDNKHAH EVYGDDEVIA RDFGTAYTKK GKGKGTKVGL
GKKQHAFHMM YGFDPQDYNL IRFVDPLTGT TLDEQIYVDI KLVQEHFADI REEAINNDQL
ERQHVYSNPG LQAFFMQNGA TNALKVDLTP HNPLRVTTNN NIAGFPECEG ILRQTGQAIK
INISEVPQPN EDGVEHEAKS MMTGLIDFTP ISNQICSIIN DSDGCKRNTY AIGFGSYLIT
PAHLFKYNNG ELTIRSSRGL YKIRNSTDVK LHPMQRRDMV IMQLPKDFPP FPRKLKFSPP
DRSMRVCLVG VNFQQNYSSC TVSESSVIAP KGNSDFWKHW ISTSEGQCGL PLVDVKDKII
VGIHSLTSTN GNTNFFVAIP DRFEEYLNEI VATNKWEKAW RYNPNLISWS GLNLVDSAPK
GLFKTSKLVE DLLNDVQEQA RTEYTWLTQD ICDNLQVVAK CPGQLVTKHV VKGQCPHFAL
YLSTHDDARN YFEPLMGKYD KSRLNKAAFT KDLMKYAKPT YVGNVQFEIF EKAVVRVKAL
LRDVGIKTCT YITDEEEIFN SLNMNAAVGA LYTGKKKQFF ENFTQAEKEE IIMRSCERLY
KGELGVWNGS LKAEVRPIEK TLANKTRTFT AAPLETLLGG KVCVDDFNNQ FYAHHLIGPW
TVGITKFYGG WNQLLEKLPN GWVYCDADGS QFDSSLTPYL INAVLDIRLS FMEEWDIGER
MLMNLYTEIV FTPIATPDGS VIKKFKGNNS GQPSTVVDNT LMVILAFNYT MLSCGIDSDM
IDSVCRMFAN GDDLLLAVNP DYEYILDLFS NHFSDLGLNF DFSSRTKDKS ELWFMSTRGI
KYNEMYIPKL EKERIVAILE WDRSKQPQHR LEAICASMIE AWGYPDLLHE IRKFYAWLLE
MQPFADLAKE GLAPYIAESA LQNLYTGNGV NESEIEKYFQ QFKTDLQGYV EDYNEDVYHQ
SGRVDAGTPP QTEEQKKAAE EQRQKAAADA EAKRKAAADE EARKAREAEA ERKRQADAAA
KGKQDKDVNV GTSGTIAVPK LKAMSSKMRL PMAKGKNILH VEFLLGYKPA QQDISNTRAT
RAEFDRWYDA VKNEYEVDDN QMTVIMSGLM VWCIENGCSP NINGVWTMMD GEEQRTFPLK
PVIENASPTF RQIMHHFSDA AEAYIEFRNA TERYMPRYGL QRNLTDYSLA RYAFDFYEIT
SRTTARAKEA HMQMKAAAVR GSNTRMFGLD GNVGESQENT ERHTAGDVSR NMHSLLGVQQ
HN


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