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Genome polyprotein

 A0A0K0YAJ7_9FLAV        Unreviewed;      3414 AA.
A0A0K0YAJ7;
11-NOV-2015, integrated into UniProtKB/TrEMBL.
11-NOV-2015, sequence version 1.
22-NOV-2017, entry version 17.
RecName: Full=Genome polyprotein {ECO:0000256|SAAS:SAAS00368684};
Flags: Precursor;
Spanish goat encephalitis virus.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Flaviviridae; Flavivirus.
NCBI_TaxID=1691889 {ECO:0000313|EMBL:AKS47983.1, ECO:0000313|Proteomes:UP000121602};
[1] {ECO:0000313|EMBL:AKS47983.1, ECO:0000313|Proteomes:UP000121602}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=AstGoatIREC2011 {ECO:0000313|EMBL:AKS47983.1};
PubMed=25701823; DOI=10.1099/vir.0.000096;
Mansfield K.L., Balseiro Morales A., Johnson N., Ayllon N., Hofle U.,
Alberdi P., Fernandez de Mera I.G., Marin J.F., Gortazar C.,
de la Fuente J., Fooks A.R.;
"Identification and characterization of a novel tick-borne flavivirus
subtype in goats (Capra hircus) in Spain.";
J. Gen. Virol. 96:1676-1681(2015).
-!- FUNCTION: Peptide 2k: Functions as a signal peptide for NS4B and
is required for the interferon antagonism activity of the latter.
{ECO:0000256|SAAS:SAAS00892720}.
-!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
{ECO:0000256|SAAS:SAAS00368577}.
-!- CATALYTIC ACTIVITY: NTP + H(2)O = NDP + phosphate.
{ECO:0000256|SAAS:SAAS00368620}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|SAAS:SAAS00383097}.
-!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + G(5')pppR-RNA = S-
adenosyl-L-homocysteine + m(7)G(5')pppR-RNA.
{ECO:0000256|SAAS:SAAS00232292}.
-!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + a 5'-(N(7)-methyl
5'-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] = S-
adenosyl-L-homocysteine + a 5'-(N(7)-methyl 5'-
triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)-[mRNA].
{ECO:0000256|SAAS:SAAS00445805}.
-!- CATALYTIC ACTIVITY: Selective hydrolysis of -Xaa-Xaa-|-Yaa- bonds
in which each of the Xaa can be either Arg or Lys and Yaa can be
either Ser or Ala. {ECO:0000256|SAAS:SAAS00232385}.
-!- SUBCELLULAR LOCATION: Host cytoplasm
{ECO:0000256|SAAS:SAAS00937464}.
-!- SUBCELLULAR LOCATION: Host endoplasmic reticulum membrane
{ECO:0000256|SAAS:SAAS00944756}; Peripheral membrane protein
{ECO:0000256|SAAS:SAAS00944756}; Lumenal side
{ECO:0000256|SAAS:SAAS00944756}.
-!- SUBCELLULAR LOCATION: Host nucleus
{ECO:0000256|SAAS:SAAS00892522}.
-!- SUBCELLULAR LOCATION: Secreted {ECO:0000256|SAAS:SAAS00944768}.
-!- SUBCELLULAR LOCATION: Virion membrane
{ECO:0000256|SAAS:SAAS00944678}; Multi-pass membrane protein
{ECO:0000256|SAAS:SAAS00944678}.
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EMBL; KP144332; AKS47983.1; -; Genomic_RNA.
RefSeq; YP_009162613.1; NC_027709.1.
GeneID; 25396048; -.
Proteomes; UP000121602; Genome.
GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO; GO:0044167; C:host cell endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO; GO:0019031; C:viral envelope; IEA:InterPro.
GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.
GO; GO:0003725; F:double-stranded RNA binding; IEA:InterPro.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0004482; F:mRNA (guanine-N7-)-methyltransferase activity; IEA:InterPro.
GO; GO:0004483; F:mRNA (nucleoside-2'-O-)-methyltransferase activity; IEA:InterPro.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.
GO; GO:0070008; F:serine-type exopeptidase activity; IEA:InterPro.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0039654; P:fusion of virus membrane with host endosome membrane; IEA:UniProtKB-KW.
GO; GO:0039520; P:induction by virus of host autophagy; IEA:UniProtKB-KW.
GO; GO:0039564; P:suppression by virus of host STAT2 activity; IEA:UniProtKB-KW.
GO; GO:0039502; P:suppression by virus of host type I interferon-mediated signaling pathway; IEA:UniProtKB-KW.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
CDD; cd12149; Flavi_E_C; 1.
Gene3D; 2.60.40.350; -; 1.
Gene3D; 3.30.387.10; -; 1.
Gene3D; 3.30.67.10; -; 1.
InterPro; IPR011492; DEAD_Flavivir.
InterPro; IPR000069; Env_glycoprot_M_flavivir.
InterPro; IPR013755; Flav_gly_cen_dom_subdom1.
InterPro; IPR001122; Flavi_capsidC.
InterPro; IPR027287; Flavi_E_Ig-like.
InterPro; IPR026470; Flavi_E_Stem/Anchor_dom.
InterPro; IPR001157; Flavi_NS1.
InterPro; IPR000752; Flavi_NS2A.
InterPro; IPR000487; Flavi_NS2B.
InterPro; IPR000404; Flavi_NS4A.
InterPro; IPR001528; Flavi_NS4B.
InterPro; IPR002535; Flavi_propep.
InterPro; IPR000336; Flavivir/Alphavir_Ig-like_sf.
InterPro; IPR001850; Flavivirus_NS3_S7.
InterPro; IPR014412; Gen_Poly_FLV.
InterPro; IPR011998; Glycoprot_cen/dimer.
InterPro; IPR036253; Glycoprot_cen/dimer_sf.
InterPro; IPR013756; GlyE_cen_dom_subdom2.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR001650; Helicase_C.
InterPro; IPR014756; Ig_E-set.
InterPro; IPR026490; mRNA_cap_0/1_MeTrfase.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR000208; RNA-dir_pol_flavivirus.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
InterPro; IPR002877; rRNA_MeTrfase_FtsJ_dom.
InterPro; IPR029063; SAM-dependent_MTases.
Pfam; PF01003; Flavi_capsid; 1.
Pfam; PF07652; Flavi_DEAD; 1.
Pfam; PF02832; Flavi_glycop_C; 1.
Pfam; PF00869; Flavi_glycoprot; 1.
Pfam; PF01004; Flavi_M; 1.
Pfam; PF00948; Flavi_NS1; 1.
Pfam; PF01005; Flavi_NS2A; 1.
Pfam; PF01350; Flavi_NS4A; 1.
Pfam; PF01349; Flavi_NS4B; 1.
Pfam; PF00972; Flavi_NS5; 1.
Pfam; PF01570; Flavi_propep; 1.
Pfam; PF01728; FtsJ; 1.
Pfam; PF00949; Peptidase_S7; 1.
PIRSF; PIRSF003817; Gen_Poly_FLV; 1.
SMART; SM00487; DEXDc; 1.
SMART; SM00490; HELICc; 1.
SUPFAM; SSF50494; SSF50494; 1.
SUPFAM; SSF52540; SSF52540; 2.
SUPFAM; SSF53335; SSF53335; 1.
SUPFAM; SSF56983; SSF56983; 1.
SUPFAM; SSF81296; SSF81296; 1.
TIGRFAMs; TIGR04240; flavi_E_stem; 1.
PROSITE; PS51527; FLAVIVIRUS_NS2B; 1.
PROSITE; PS51528; FLAVIVIRUS_NS3PRO; 1.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
PROSITE; PS51194; HELICASE_CTER; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PROSITE; PS51591; RNA_CAP01_NS5_MT; 1.
4: Predicted;
Activation of host autophagy by virus {ECO:0000256|SAAS:SAAS00445756};
ATP-binding {ECO:0000256|SAAS:SAAS00058020};
Capsid protein {ECO:0000256|SAAS:SAAS00057850};
Complete proteome {ECO:0000313|Proteomes:UP000121602};
Disulfide bond {ECO:0000256|SAAS:SAAS00139753};
Fusion of virus membrane with host endosomal membrane
{ECO:0000256|SAAS:SAAS00489633};
Fusion of virus membrane with host membrane
{ECO:0000256|SAAS:SAAS00489633};
Helicase {ECO:0000256|SAAS:SAAS00058020};
Host cytoplasm {ECO:0000256|SAAS:SAAS00936979};
Host endoplasmic reticulum {ECO:0000256|SAAS:SAAS00944771};
Host membrane {ECO:0000256|SAAS:SAAS00445977};
Host nucleus {ECO:0000256|SAAS:SAAS00892445};
Host-virus interaction {ECO:0000256|SAAS:SAAS00445756,
ECO:0000256|SAAS:SAAS00445995, ECO:0000256|SAAS:SAAS00892696};
Hydrolase {ECO:0000256|SAAS:SAAS00058020,
ECO:0000256|SAAS:SAAS00462397};
Inhibition of host innate immune response by virus
{ECO:0000256|SAAS:SAAS00892696};
Inhibition of host interferon signaling pathway by virus
{ECO:0000256|SAAS:SAAS00892696};
Inhibition of host STAT2 by virus {ECO:0000256|SAAS:SAAS00892696};
Membrane {ECO:0000256|SAAS:SAAS00445939,
ECO:0000256|SAAS:SAAS00445977, ECO:0000256|SAM:Phobius};
Metal-binding {ECO:0000256|SAAS:SAAS00940329};
Methyltransferase {ECO:0000256|SAAS:SAAS00817755};
Nucleotide-binding {ECO:0000256|SAAS:SAAS00058020};
Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00510600};
Protease {ECO:0000256|SAAS:SAAS00462397};
RNA-binding {ECO:0000256|SAAS:SAAS00076745};
RNA-directed RNA polymerase {ECO:0000256|SAAS:SAAS00510600};
Secreted {ECO:0000256|SAAS:SAAS00944674};
Serine protease {ECO:0000256|SAAS:SAAS00462397};
Transferase {ECO:0000256|SAAS:SAAS00510600,
ECO:0000256|SAAS:SAAS00817755};
Transmembrane {ECO:0000256|SAAS:SAAS00445939,
ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAAS:SAAS00445939,
ECO:0000256|SAM:Phobius};
Viral attachment to host cell {ECO:0000256|SAAS:SAAS00445995};
Viral immunoevasion {ECO:0000256|SAAS:SAAS00892696};
Viral penetration into host cytoplasm {ECO:0000256|SAAS:SAAS00489633};
Viral RNA replication {ECO:0000256|SAAS:SAAS00664279};
Virion {ECO:0000256|SAAS:SAAS00057850, ECO:0000256|SAAS:SAAS00445995};
Virus entry into host cell {ECO:0000256|SAAS:SAAS00445995,
ECO:0000256|SAAS:SAAS00489633}.
TRANSMEM 101 119 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 728 749 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 756 776 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1133 1153 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1162 1181 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1297 1317 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1383 1401 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1455 1480 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 2160 2183 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 2195 2223 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 2243 2259 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 2344 2363 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 2369 2387 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 2433 2451 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 1357 1487 FLAVIVIRUS_NS2B.
{ECO:0000259|PROSITE:PS51527}.
DOMAIN 1490 1669 Peptidase S7.
{ECO:0000259|PROSITE:PS51528}.
DOMAIN 1675 1831 Helicase ATP-binding.
{ECO:0000259|PROSITE:PS51192}.
DOMAIN 1841 2000 Helicase C-terminal.
{ECO:0000259|PROSITE:PS51194}.
DOMAIN 2512 2776 MRNA cap 0-1 NS5-type MT.
{ECO:0000259|PROSITE:PS51591}.
DOMAIN 3040 3189 RdRp catalytic.
{ECO:0000259|PROSITE:PS50507}.
ACT_SITE 1543 1543 Charge relay system; for serine protease
NS3 activity.
{ECO:0000256|PIRSR:PIRSR003817-1}.
ACT_SITE 1567 1567 Charge relay system; for serine protease
NS3 activity.
{ECO:0000256|PIRSR:PIRSR003817-1}.
ACT_SITE 1627 1627 Charge relay system; for serine protease
NS3 activity.
{ECO:0000256|PIRSR:PIRSR003817-1}.
SEQUENCE 3414 AA; 379034 MW; 3829DF26D19F7897 CRC64;
MGRKSILKGK GGGPPRRVSK ETATKTRQPR VQMPNGLVLM RMMGILWHAV AGTARNPVLK
AFWNSVPLRQ ATAALRKIKR TVSALMVGLQ RRGKRRSMTD WMNWLLLIAL LGMTLAATVR
KERDGTTVIR AEGKDAATQV RVENGTCVIL ATDMGSWCDD SLSYECVTIE QGEEPVDVDC
FCRNVDGVYL EYGRCGKQEG SRTRRSVLIP SHAQGELTGR GRKWLEGDSL RTHLTRVEGW
VWKNKLLTLA MFAVVWLALE SVVTRVAVLV VLLCLAPVYA SRCTHLENRD FVTGTQGTTR
VTLVLELGGC VTITAEGKPS MDVWLDAIYQ ENPAKTREYC LHAKLSETKV AARCPTMGPA
VLAEEHQIGT VCKRDQSDRG WGNHCGLFGK GSIVACVKAA CEAKKKATGY VYDANKIVYT
VKVEPHTGDY VAANETHKGR KTATFTVSSE KTILTLGEYG DVSLLCRVAS GVDLAQTIVL
ELDKTAEHLP TAWQVHRDWF NDLALPWKHD GGPRWNNAER LVEFGAPHAV KMDVYNLGDQ
TGVLLKALAG VPVAHIEGNK YHLKSGHVTC EVGLEKLKMK GLTYTMCDKS KFAWKRVPTD
SGHDTVVMEV TFSGSKPCRI PVRAVAHGSP EVNVAMLITP NPTIENDGGG FIEMQLPPGD
NIIYVGELSH QWFQKGSSIG RVFQTTRKGI ERLTVIGEHA WDFGSAGGFL SSIGKAVHTV
LGGAFNSIFG GVGFLPKLLM GVALAWLGLN TRNPTMSMSF LLAGGLVLAM TLGVGADVGC
AVDTERMELR CGEGLVVWRE VSEWYDNYAY YPETPGALAS AIKEAFEEGS CGVVPQNRLE
MAMWRSSATE LNLALAEGDA NLTVVVDKND PTDYRGGVPG LLKKGKDMKI SWKSWGHSMI
WSIPEAPRRF MVGTEGQSEC PLERRKTGVF TVAEFGVGLR TKVFLDFRQE PTHECDTGVM
GAAVKNGMAV HTDQSLWMRS VRNDTGTYIV ELLVTDLRNC SWPASHTIDN ADVVNSELFL
PASLAGPRSW YNKIPGYSEQ VKGPWQYTPI RVIREECPGT TVTINAKCEK RGASVRSTTE
SGKVIPEWCC RACTMPPVTF RTGTDCWYAM EIRPVHAQGG LVRSMVVADN GELLSEGGIP
GIVALFVVLE YIIRRRPSTG TTVVWGGVIV LALLVTGMVR IEGLVRYVVA VGIAFHLELG
PEIVALMLLQ AVFELRVGLL SAFALRRGLT VREMVTTYFL LLVLEMGLPS VSFEDLWKWS
DALAMGALIF RACSAEGKTG TGLLIIALMT QQDVVTIHHG LVCFLAVASA CSVWRLLRGH
KEQKGLTWIV PLARLLGGEG SGIRLLAFWE LAAHRRKRSF SEPLTVVGVM LTLASGMMRH
TSQEALCALA VASFFLLMLV LGTRRMQLVA EWSGCVEWHP ELVNEGGEIS LRVRQDSMGN
FHLTELEKEE RMMAFWLLAG LVASAFHWSG ILGVMGLWTL TEMMRSSRRS DLVFSGQGGR
ERGDSPFEVK DGVYRIFSPG LFWGQRQVGV GYGHKGVLHT MWHVTRGAAL SIDDAVTGPY
WADVKEDVVC YGGAWSLEEK WKGETVQVHA FPPGKAHEIH QCQPGELILD TGKKLGAIPI
DLARGTSGSP ILNAQGAVVG LYGNGLKTNE SYVSSIAQGE AEKSRPNLPQ AVVGTGWTSK
GQITVLDMHP GSGKTHRVLP ELIRQCIERR LRTLVLAPTR VVLKEMERAL SGKRVRFHSP
AVSDQQVGGA IVDVMCHATY VNRRLLPQGR QNWEVAIMDE AHWTDPHSIA ARGHLYTLAK
ENKCALVLMT ATPPGKSEPF PESNGAITSE ERQIPDGEWR DGFDWITEYE GRTAWFVPSI
AKGGVIARTL RQKGKSVICL NSKTFEKDYS RVKEEKPDFV VTTDISEMGA NLDVSRVIDG
RTNIKPEEVD GKVEFTGTRR VTTASAAQRR GRVGRQGGRT DEYIYSGQCD DDDSGLVQWK
EAQILLDNIT TLRGPVATFY GPEQDRMPEV AGHFRLTEEK RKHFRHLLTH CDFTPWLAWH
VAANVSSVTD RSWTWEGPEA NAVDEASGDL VTFRSPNGAE RTLRPVWRDA RMFREGRDIK
EFVAYASGRR SFGDVLTGMS GVPELLRHRC VSALDVFYTL MHEEPGSRAM KMAERDAPEA
FLTVVEMMVL GLATLGVVWC FVVRTSISRM VLGTLVLLAS LLLLWAGGVG YGSMAGVALI
FYTLLTVLQP ETGKQRSSDD NKLAYFLLTL CSLAGLVAAN EMGFLEKTKA DLSAVLWSEH
EELRQWSEWT NVDIQPARSW GTYVLVVSLF TPYIIHQLQT KIQQLVNSAV ASGAQAMRDL
GGGAPFFGVA GHVMTLGVVS LIGATPTSLM VGIGLAAFHL AIVVSGLEAE LTQRAHKAFF
TSMVRNPMVD GDVLNPFREG EAKPALYERK MSLVLAIALC LMSVVMNRTA ASMAEATAVG
LAAAGQLLRP EADTLWTMPV ACGMSSVVRG SLWGFLPLGH RLWLRASGAR RGGSEGDTLG
DLWKRRLNSC TREEFFVYRR TGILETERDR ARELLKRGET NMGLAVSRGT AKLAWLEERG
YATLKGEVVD LGCGRGGWSY YAASRPGVMS VRAYTIGGRG HEVPKMVTSL GWNLIKFRSG
MDVFSMQPHR ADTIMCDIGE SNPDATVEGE RTRRVILLME QWKIRNPTAA CVFKVLAPYR
PEVIEALHRF QLQWGGGLVR TPFSRNSTHE MYYSTAVTGN IVNSVNIQSR KLLARFGDQR
GPTRVPELDL GVGTRCVVLA EDKVKEQDVQ ERIRALREQY NETWHMDEEH PYRTWQYWGS
YRTTPTGSAA SLINGVVKLL SWPWNAREDV VRMAMTDTTA FGQQRVFKEK VDTKAQEPQP
GTRVIMRAVN DWILERLAQK SKPRMCSREE FIAKVRSNAA LGAWSDEQNR WASAREAVED
PAFWHLVDEE RERHLMGRCA HCVYNMMGKR EKKLGEFGVA KGSRAIWYMW LGSRFLEFEA
LGFLNEDHWA SRESSGGGVE GISLNYLGWH LKKLSTLNGG LFYADDTAGW DTKVTNADLE
DEEQILRYME GEHKQLAATI MQKAYHAKVV KVARPSRDGG CIMDVITRRD QRGSGQVVTY
ALNTLTNIKV QLIRMMEGEG VIGAEDAHNP RLLRVERWLK EHGEERLGRM LVSGDDCVVR
PMDDRFGRAL YFLNDMAKTR KDIGEWEPSA GFSSWEEVPF CSHHFHELVM KDGRTLVVPC
RDQDELVGRA RVSPGCGWSV RETACLSKAY GQMWLLSYFH RRDLRTLGFA ISSAVPVDWV
PTGRTTWSIH ASGAWMTTED MLDVWNRVWI LDNPFMQNKE RITEWRDVPY LPKAQDMVCS
SLVGRKERAE WAKNIWGAVE KVRKMIGPER FKDYLSCMDR HDLHWELKLE SSII


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