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Genome polyprotein

 A9UCQ6_9PICO            Unreviewed;      2182 AA.
A9UCQ6;
05-FEB-2008, integrated into UniProtKB/TrEMBL.
05-FEB-2008, sequence version 1.
23-MAY-2018, entry version 74.
RecName: Full=Genome polyprotein {ECO:0000256|SAAS:SAAS00958788};
Human parechovirus 6.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Picornavirales; Picornaviridae; Parechovirus.
NCBI_TaxID=411152 {ECO:0000313|EMBL:ABX79460.1};
[1] {ECO:0000313|EMBL:ABX79460.1}
NUCLEOTIDE SEQUENCE.
STRAIN=2005-823 {ECO:0000313|EMBL:ABX79460.1};
PubMed=18077635; DOI=10.1128/JCM.02009-07;
de Vries M., Pyrc K., Berkhout R., Vermeulen-Oost W., Dijkman R.,
Jebbink M.F., Bruisten S., Berkhout B., van der Hoek L.;
"Human parechovirus type 1, 3, 4, 5, and 6 detection in picornavirus
cultures.";
J. Clin. Microbiol. 46:759-762(2008).
-!- CATALYTIC ACTIVITY: NTP + H(2)O = NDP + phosphate.
{ECO:0000256|SAAS:SAAS00711622}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|SAAS:SAAS00383097}.
-!- CATALYTIC ACTIVITY: Selective cleavage of Gln-|-Gly bond in the
poliovirus polyprotein. In other picornavirus reactions Glu may be
substituted for Gln, and Ser or Thr for Gly.
{ECO:0000256|SAAS:SAAS00711755}.
-!- SUBCELLULAR LOCATION: Host cytoplasmic vesicle membrane
{ECO:0000256|SAAS:SAAS00711512}; Peripheral membrane protein
{ECO:0000256|SAAS:SAAS00711512}; Cytoplasmic side
{ECO:0000256|SAAS:SAAS00711512}. Virion
{ECO:0000256|SAAS:SAAS01033941}.
-!- SIMILARITY: Belongs to the picornaviruses polyprotein family.
{ECO:0000256|SAAS:SAAS00727971}.
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EMBL; EU077518; ABX79460.1; -; Genomic_RNA.
GO; GO:0044162; C:host cell cytoplasmic vesicle membrane; IEA:UniProtKB-SubCell.
GO; GO:0044385; C:integral to membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO; GO:0019015; C:viral genome; IEA:InterPro.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
GO; GO:0005216; F:ion channel activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0039707; P:pore formation by virus in membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0051259; P:protein complex oligomerization; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
CDD; cd00205; rhv_like; 2.
Gene3D; 2.60.120.20; -; 3.
InterPro; IPR004004; Helic/Pol/Pept_Calicivir-typ.
InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir.
InterPro; IPR014759; Helicase_SF3_ssRNA_vir.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000199; Peptidase_C3A/C3B_picornavir.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR001676; Picornavirus_capsid.
InterPro; IPR033703; Rhv-like.
InterPro; IPR001205; RNA-dir_pol_C.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
InterPro; IPR029053; Viral_coat.
InterPro; IPR009419; VPP_parechovir_P3A.
InterPro; IPR009407; VPP_parechovir_P3B.
Pfam; PF06344; Parecho_VpG; 1.
Pfam; PF00548; Peptidase_C3; 1.
Pfam; PF06363; Picorna_P3A; 1.
Pfam; PF00680; RdRP_1; 1.
Pfam; PF00073; Rhv; 1.
Pfam; PF00910; RNA_helicase; 1.
PRINTS; PR00918; CALICVIRUSNS.
SUPFAM; SSF50494; SSF50494; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PROSITE; PS51218; SF3_HELICASE_2; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|SAAS:SAAS01033926};
Capsid protein {ECO:0000256|SAAS:SAAS00958801};
Helicase {ECO:0000256|SAAS:SAAS01033926};
Host cytoplasm {ECO:0000256|SAAS:SAAS00711571};
Host cytoplasmic vesicle {ECO:0000256|SAAS:SAAS00711589};
Host membrane {ECO:0000256|SAAS:SAAS00795395};
Host-virus interaction {ECO:0000256|SAAS:SAAS00711583};
Hydrolase {ECO:0000256|SAAS:SAAS01033926,
ECO:0000256|SAAS:SAAS01035925};
Ion channel {ECO:0000256|SAAS:SAAS00711569};
Ion transport {ECO:0000256|SAAS:SAAS00711569};
Membrane {ECO:0000256|SAAS:SAAS00795395};
Nucleotide-binding {ECO:0000256|SAAS:SAAS01033926};
Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00510600};
Protease {ECO:0000256|SAAS:SAAS01035925};
RNA-binding {ECO:0000256|SAAS:SAAS00711776};
RNA-directed RNA polymerase {ECO:0000256|SAAS:SAAS00510600};
Thiol protease {ECO:0000256|SAAS:SAAS01035925};
Transferase {ECO:0000256|SAAS:SAAS00510600};
Transport {ECO:0000256|SAAS:SAAS00711569};
Viral attachment to host cell {ECO:0000256|SAAS:SAAS00711583};
Viral ion channel {ECO:0000256|SAAS:SAAS00711569};
Viral RNA replication {ECO:0000256|SAAS:SAAS00664279};
Virion {ECO:0000256|SAAS:SAAS00711583, ECO:0000256|SAAS:SAAS00958801};
Virus entry into host cell {ECO:0000256|SAAS:SAAS00711583}.
DOMAIN 1162 1320 SF3 helicase.
{ECO:0000259|PROSITE:PS51218}.
DOMAIN 1947 2061 RdRp catalytic.
{ECO:0000259|PROSITE:PS50507}.
SEQUENCE 2182 AA; 246089 MW; 0252859C0537ECE0 CRC64;
METIKSIADM ATGITKTVDS TINSVNETIG NTDNASGGDI LTRVADDASN VLGPNCYATT
SEPENKDVVQ ATTTVNTTNL TQHPSAPTMP FTPDFANVDN FHSMAYDITS GDKNPSKLIR
LETGDWTLTA KRSDKIMHVE LPKAFWNEQR KPAYGQAKYF AAVRCGFHFQ VQINVNQGAA
GSALVVYMPK PVVDHETKME FGAFTNLPHV LMNLAETTQA DLCIPYVSDT NYVMTDSSDL
GHLRVYVWTP LSMPTGITTQ VDVTVLGSLL QLDFQNPRPY NKQVNIYDNG PTKTISKKKI
LTMSTKYKWT RNKFDIAEGP GSMNMANVLS TTGAQSVALV GERAFYDPRS AGSRSRFDDL
VKITQLFSVM ADSDTPSTTH GHDAKGYFKW SATTNPMYIV HRNIVYLRLF PNINNFVNSF
SYFRGSLVLR LNVYASTFNR GRLRMGFFPN ASEDTDEELD NAIYTICDIG SDNSFEITIP
YSFSTWMRKT AGHPIGLLQI EVLNRLTYNS SSPSEVFCIL QGRMGEDAKF FCPTGSIVTF
QNSWGSQMDL SDPLCIEDDA ENCKQTISPN ELGLTSAQDD GPLGGEKPNY FLNFRTMNVD
IFTVSHTKVD NVFGRAWFVT SHDFNNEGQW PLNLTFPFEG HGSLSLLFAY FTGELNIHVL
FLSDKGFLRV VHTYDTADNR LINLASNGVI TIPAGEQMSL SAPFYSHKPL RTVRDTHSLG
RLICKPFLTG TTSGRIEVYM SLRCPNFFFP VPAPKNTPRS QSRALRGDMA NLTNQSPYDQ
QPRNQMMKLA YLNRGFYKHY GIIVGEHVYQ LDSDDIFKTA LTGKAKFTKT RLTSEWIVEE
ECELDYFRIK YLESAVNSEH IFSVDKNCET IAKDIFGTHT LSQHQAIGLI GTILLTAGLM
STIKTPVNAT TIKEFFNHAI EGDEQGLSLL VQKCTTFFSS AATEILDNDL VKFIIKILVR
ILCYMVLYCH KPNILTTACL STLLIMDVTS SSVLSPSCKA LMQCLMDGDV KKLAEVVAES
MSNTDDDEIK EQICDTVKYT KTILSNQGPF KGFNEVSTAF RHIDWWIHTL LKIKDMVLSV
FKPSLESKAI QWLERNKEHV CGILDYASDI IVESKDQSKV KTQDFYQRYS DCLSKFKPIM
AICFRSCHNS ISNTVYRLFQ ELARIPNRIS TNNDLIRIEP IGIWIQGEPG QGKSFLTHTL
SRQLQKSCKL NGVFTNPTAS EFMDGYDNQD IHLIDDLGQT RKEKDIEMLC NCISSVPFIV
PMAHLEEKGK FYTSKLVIAT TNKSDFSSTV LQDSGALKRR FPYIMHIRAA KAYSKAGKLN
VSQAMAAMST GECWEVSKNG RDWETLKLKE LVDKITIDYN ERVKNYNAWK QQLENQTLDD
LDDAVSYIKH NFPDAIPYID EYLNIEMSTL IEQMEAFIEP KPSVFKCFAN KIGSKISKAS
KEVVDWFSSK IKSMLSFVER NKAWLTVVSA VTSAISILLL VTKIFKKEES KDERAYNPTL
PAAKPKGAFP VTQREFKNEA PYDGQLEHII SQMAYITGST TGHLTHCAGY QHDEIILHGH
SIKYLEQEEE LTLHYKNKVF PIEQPSVTQV TLGGKPMDLA ILKCKLPFRF KKNSKYYTNK
IGTESMLIWM TEQGIITKEV QRVHHSGGIK TREGTESTKT ISYTVKSCKG MCGGLLISKV
EGNFKILGMH IAGNGEMGVA IPFNFLKNDM SDQGIITDVT PIQPMYINTK TQIHKSPVYG
AVEVKMGPAV LSKSDPRLEE PVECLIKKSA AKYRVNKFQV NNELWQGVKA CVKSKFREIF
GVNGIVDMKT AILGTSHVNS MDLSTSAGYS FVKSGYKKKD LICLEPFSVS PMLEKLVQDK
FYNLLKGNQI TTIFNTCLKD ELRKLDKIAS GKTRCIEACE VDYCIVYRMI MMEIYDKIYQ
TPCYYSGLAV GINPYKDWHF MINALNDYNY EMDYSQYDGS LSSMLLWEAV EVLAYCHDSP
DLVMQLHKPV IDSDHIVFNE RWLIHGGMPS GSPCTTVLNS LCNLMMCVYT TNLISPGIDC
LPIVYGDDVI LSLDKEIEPE RLQSIMAESF GAEVTGSRKD EPPSLKPRME VEFLKRKPGY
FPESTFIVGK LDTENMIQHL MWMKNFSTFK QQLQSYLMEL CLHGKDIYQH YIKILDPYLK
EWNITVDDYD VVIAKLMPMV FD


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