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Genome polyprotein

 B6F2F5_9ENTO            Unreviewed;      2438 AA.
B6F2F5;
16-DEC-2008, integrated into UniProtKB/TrEMBL.
16-DEC-2008, sequence version 1.
10-MAY-2017, entry version 68.
RecName: Full=Genome polyprotein {ECO:0000256|SAAS:SAAS00711595};
Enterovirus A71.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Picornavirales; Picornaviridae; Enterovirus; Enterovirus A.
NCBI_TaxID=39054 {ECO:0000313|EMBL:BAG82822.1, ECO:0000313|Proteomes:UP000166526};
[1] {ECO:0000313|EMBL:BAG82822.1, ECO:0000313|Proteomes:UP000166526}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=EV71-GFP {ECO:0000313|EMBL:BAG82822.1};
Koike S.;
"Identification of Enterovirus 71 receptor.";
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases.
-!- CATALYTIC ACTIVITY: NTP + H(2)O = NDP + phosphate.
{ECO:0000256|SAAS:SAAS00817576}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|SAAS:SAAS00383097}.
-!- CATALYTIC ACTIVITY: Selective cleavage of Gln-|-Gly bond in the
poliovirus polyprotein. In other picornavirus reactions Glu may be
substituted for Gln, and Ser or Thr for Gly.
{ECO:0000256|SAAS:SAAS00711755}.
-!- SUBCELLULAR LOCATION: Host cytoplasmic vesicle membrane
{ECO:0000256|SAAS:SAAS00711512}; Peripheral membrane protein
{ECO:0000256|SAAS:SAAS00711512}; Cytoplasmic side
{ECO:0000256|SAAS:SAAS00711512}.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000256|SAAS:SAAS00803776}.
-!- SIMILARITY: Belongs to the picornaviruses polyprotein family.
{ECO:0000256|SAAS:SAAS00782306}.
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EMBL; AB469183; BAG82822.1; -; Genomic_RNA.
ProteinModelPortal; B6F2F5; -.
Proteomes; UP000166526; Genome.
GO; GO:0044162; C:host cell cytoplasmic vesicle membrane; IEA:UniProtKB-SubCell.
GO; GO:0044385; C:integral to membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
GO; GO:0005216; F:ion channel activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0008218; P:bioluminescence; IEA:InterPro.
GO; GO:0006091; P:generation of precursor metabolites and energy; IEA:InterPro.
GO; GO:0039707; P:pore formation by virus in membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0051259; P:protein oligomerization; IEA:UniProtKB-KW.
GO; GO:0018144; P:RNA-protein covalent cross-linking; IEA:InterPro.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
CDD; cd00205; rhv_like; 3.
Gene3D; 4.10.80.10; -; 1.
InterPro; IPR003593; AAA+_ATPase.
InterPro; IPR009017; GFP.
InterPro; IPR011584; GFP-related.
InterPro; IPR000786; Green_fluorescent_prot.
InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir.
InterPro; IPR014759; Helicase_SF3_ssRNA_vir.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR014838; P3A.
InterPro; IPR000081; Peptidase_C3.
InterPro; IPR000199; Peptidase_C3A/C3B_picornavir.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR003138; Pico_P1A.
InterPro; IPR002527; Pico_P2B.
InterPro; IPR001676; Picornavirus_capsid.
InterPro; IPR033703; Rhv-like.
InterPro; IPR001205; RNA-dir_pol_C.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
Pfam; PF01353; GFP; 1.
Pfam; PF08727; P3A; 1.
Pfam; PF00548; Peptidase_C3; 1.
Pfam; PF02226; Pico_P1A; 1.
Pfam; PF00947; Pico_P2A; 1.
Pfam; PF01552; Pico_P2B; 1.
Pfam; PF00680; RdRP_1; 1.
Pfam; PF00073; Rhv; 3.
Pfam; PF00910; RNA_helicase; 1.
PRINTS; PR01229; GFLUORESCENT.
ProDom; PD001306; Peptidase_C3; 1.
ProDom; PD649346; Pico_P2B; 1.
SMART; SM00382; AAA; 1.
SUPFAM; SSF50494; SSF50494; 2.
SUPFAM; SSF52540; SSF52540; 1.
SUPFAM; SSF54511; SSF54511; 1.
SUPFAM; SSF89043; SSF89043; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PROSITE; PS51218; SF3_HELICASE_2; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|SAAS:SAAS00124676};
Capsid protein {ECO:0000256|SAAS:SAAS00803779};
Complete proteome {ECO:0000313|Proteomes:UP000166526};
Helicase {ECO:0000256|SAAS:SAAS00124676};
Host cytoplasm {ECO:0000256|SAAS:SAAS00711571};
Host cytoplasmic vesicle {ECO:0000256|SAAS:SAAS00711589};
Host membrane {ECO:0000256|SAAS:SAAS00795395};
Host-virus interaction {ECO:0000256|SAAS:SAAS00711583};
Hydrolase {ECO:0000256|SAAS:SAAS00124676,
ECO:0000256|SAAS:SAAS00482329};
Ion channel {ECO:0000256|SAAS:SAAS00711569};
Ion transport {ECO:0000256|SAAS:SAAS00711569};
Membrane {ECO:0000256|SAAS:SAAS00795395};
Nucleotide-binding {ECO:0000256|SAAS:SAAS00124676};
Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00510600};
Protease {ECO:0000256|SAAS:SAAS00482329};
RNA-binding {ECO:0000256|SAAS:SAAS00711776};
RNA-directed RNA polymerase {ECO:0000256|SAAS:SAAS00510600};
Thiol protease {ECO:0000256|SAAS:SAAS00482329};
Transferase {ECO:0000256|SAAS:SAAS00510600};
Transport {ECO:0000256|SAAS:SAAS00711569};
Viral attachment to host cell {ECO:0000256|SAAS:SAAS00711583};
Viral ion channel {ECO:0000256|SAAS:SAAS00711569};
Viral RNA replication {ECO:0000256|SAAS:SAAS00664279};
Virion {ECO:0000256|SAAS:SAAS00711583, ECO:0000256|SAAS:SAAS00803779};
Virus entry into host cell {ECO:0000256|SAAS:SAAS00711583}.
DOMAIN 1461 1619 SF3 helicase.
{ECO:0000259|PROSITE:PS51218}.
DOMAIN 2203 2318 RdRp catalytic.
{ECO:0000259|PROSITE:PS50507}.
SEQUENCE 2438 AA; 270282 MW; 6CC499D9E539A100 CRC64;
MGSVSKGEEL FTGVVPILVE LDGDVNGHKF SVSGEGEGDA TYGKLTLKFI CTTGKLPVPW
PTLVTTLTYG VQCFSRYPDH MKQHDFFKSA MPEGYVQERT IFFKDDGNYK TRAEVKFEGD
TLVNRIELKG IDFKEDGNIL GHKLEYNYNS HNVYIMADKQ KNGIKVNFKI RHNIEDGSVQ
LADHYQQNTP IGDGPVLLPD NHYLSTQSAL SKDPNEKRDH MVLLEFVTAA GITLGMDELY
KAITTLGSQV STQRSGSHEN SNSATEGSTI NYTTINYYKD SYAATAGKQS LKQDPDKFAN
PVKDIFTEMA APLKSPSAEA CGYSDRVAQL TIGNSTITTQ EAANIIVGYG EWPSYCSDDD
ATAVDKPTRP DVSVNRFYTL DTKLWEKSSK GWYWKFPDVL TETGVFGQNA QFHYLYRSGF
CIHVQCNASK FHQGALLVAI LPEYVIGTVA GGTGTEDSHP PYKQTQPGAD GFELQHPYVL
DAGIPISQLT VCPHQWINLR TNNCATIIVP YMNTLPFDSA LNHCNFGLLV VPISPLDFDQ
GATPVIPITI TLAPMCSEFA GLRQAVTQGF PTEPKPGTNQ FLTTDDGVSA PILPNFHPTP
CIHIPGEVRN LLELCQVETI LEVNNVPTNA TSLMERLRFP VSAQAGKGEL CAVFRADPGR
DGPWQSTMLG QLCGYYTQWS GSLEVTFMFT GSFMATGKML IAYTPPGGPL PKDRATAMLG
THVIWDFGLQ SSVTLVIPWI SNTHYRAHAR DGVFDYYTTG LVSIWYQTNY VVPIGAPNTA
YIIALAAAQK NFTMKLCKDT SHILQTASIQ GDRVADVIES SIGDSVSRAL TQALPAPTGQ
NTQVSSHRLD TGEVPALQAA EIGASSNTSD ESMIETRCVL NSHSTAETTL DSFFSRAGLV
GEIDLPLEGT TNPNGYANWD IDITGYAQMR RKVELFTYMR FDAEFTFVAC TPTGGVVPQL
LQYMFVPPGA PKPESRESLA WQTATNPSVF VKLTDPPAQV SVPFMSPASA YQWFYDGYPT
FGEHKQEKDL EYGACPNNMM GTFSVRTVGS LKSKYPLVVR IYMRMKHVRA WIPRPMRNQN
YLFKANPNYA GNSIKPTGTS RTAITTLGKF GQQSGAIYVG NFRVVNRHLA THNDWANLVW
EDSSRDLLVS STTAQGCDTI ARCDCQTGVY YCNSKRKHYP VSFSKPSLIY VEASEYYPAR
YQSHLMLAAG HSEPGDCGGI LRCQHGVVGI VSTGGNGLVG FADVRDLLWL DEEAMEQGVS
DYIKGLGDAF GTGFTDAVSR EVEALKNHLI GSEGAVEKIL KNLIKLISAL VIVIRSDYDM
VTLTATLALI GCHGSPWAWI KAKTASILGI PIAQKQSASW LKKFNDMANA AKGLEWISSK
ISKFIDWLKE KIIPAAREKV EFLNNLKQLP LLENQISNLE QSAASQEDLE AMFGNVSYLA
HFCRKFQPLY AAEAKRVYAL EKRMNNYMQF KSKHRIEPVC LIIRGSPGTG KSLATGIIAR
AIADKYHSSV YSLPPDPDHF DGYKQQVVTV MDDLCQNPDG KDMSLFCQMV STVDFIPPMA
SLEEKGVSFT SKFVIASTNS SNIIVPTVSD SDAIRRRFYM DCDIEVTDSY KTDLGRLDAG
RAAKLCSENN TANFKRCSPL VCGKAIQLRD RKSKVRYSVD TVVSELIREY NNRSAIGNTI
EALFQGPPKF RPIRISLEEK PAPDAISDLL ASVDSEEVRQ YCRDQGWIIP ETPTNVERHL
NRAVLVXQSI ATVVAVVSLV YVIYKLFAGF QGAYSGAPKQ ILKKPVLRTA TVQGPSLDFA
LSLLRRNIRQ VQTDQGHFTM LGVRDRLAVL PRHSQPGKTI WVEHKLVNIL DAVELVDEQG
VNLELTLITL DTNEKFRDIT KFIPESISAA SDATLVINTE HMPSMFVPVG DVVQYGFLNL
SGKPTHRTMM YNFPTKAGQC GGVVTSVGKV IGIHIGGNGR QGFCAGLKRS YFASEQGEIQ
WVKPNKETGR LNINGPTRTK LEPSVFHDVF EGNKEPAVLH SKDPRLEVDF EQALFSKYVG
NTLYEPDEYI KEAALHYANQ LKQLDIDTSQ MSMEEACYGT ENLEAIDLHT SAGYPYSALG
IKKRDILDST TRDVSKMKFY MDKYGLDLPY STYVKDELRS IDKIKKGKSR LIEASSLNDS
VYLRMTFGHL YETFHANPGT VTGSAVGCNP DTFWSKLPIL LPGSLFAFDY SGYDASLSPV
WFRALELVLR EIGYSEEAVS LVEGINHTHH VYRNKTYCVL GGMPSGCSGT SIFNSMINNI
IIRALLIKTF KGIDLDELNM VAYGDDVLAS YPFPIDCLEL ARTGKEYGLT MTPADKSPCF
NEVNWDNATF LKRGFLPDEQ FPFLIHPTMP MKEIHESIRW TKDARNTQDH VRSLCLLAWH
NGKQEYEKFV SAIRSVPVGK ALAIPNYENL RRNWLELF


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