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Genome polyprotein

 B7S813_9PICO            Unreviewed;      2333 AA.
B7S813;
10-FEB-2009, integrated into UniProtKB/TrEMBL.
10-FEB-2009, sequence version 1.
25-OCT-2017, entry version 61.
RecName: Full=Genome polyprotein {ECO:0000256|SAAS:SAAS00711595};
Foot-and-mouth disease virus - type Asia 1.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Picornavirales; Picornaviridae; Aphthovirus.
NCBI_TaxID=110195 {ECO:0000313|EMBL:ABV03522.1, ECO:0000313|Proteomes:UP000116386};
[1] {ECO:0000313|EMBL:ABV03522.1, ECO:0000313|Proteomes:UP000116386}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Asia1/MOG/05 {ECO:0000313|EMBL:ABV03522.1};
PubMed=18977402; DOI=10.1016/j.virusres.2008.09.009;
Lee K.N., Oem J.K., Park J.H., Kim S.M., Lee S.Y., Tserendorj Sh.,
Sodnomdarjaa R., Joo Y.S., Kim H.;
"Evidence of recombination in a new isolate of foot-and-mouth disease
virus serotype Asia 1.";
Virus Res. 139:117-121(2009).
-!- CATALYTIC ACTIVITY: NTP + H(2)O = NDP + phosphate.
{ECO:0000256|SAAS:SAAS00817576}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|SAAS:SAAS00383097}.
-!- CATALYTIC ACTIVITY: Selective cleavage of Gln-|-Gly bond in the
poliovirus polyprotein. In other picornavirus reactions Glu may be
substituted for Gln, and Ser or Thr for Gly.
{ECO:0000256|SAAS:SAAS00711755}.
-!- SUBCELLULAR LOCATION: Host cytoplasmic vesicle membrane
{ECO:0000256|SAAS:SAAS00711512}; Peripheral membrane protein
{ECO:0000256|SAAS:SAAS00711512}; Cytoplasmic side
{ECO:0000256|SAAS:SAAS00711512}.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000256|SAAS:SAAS00803776}.
-!- SIMILARITY: Belongs to the picornaviruses polyprotein family.
{ECO:0000256|SAAS:SAAS00782306}.
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EMBL; EF614458; ABV03522.1; -; Genomic_RNA.
Proteomes; UP000116386; Genome.
GO; GO:0044162; C:host cell cytoplasmic vesicle membrane; IEA:UniProtKB-SubCell.
GO; GO:0019030; C:icosahedral viral capsid; IEA:InterPro.
GO; GO:0044385; C:integral to membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
GO; GO:0005216; F:ion channel activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0039707; P:pore formation by virus in membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0051259; P:protein oligomerization; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
GO; GO:0019082; P:viral protein processing; IEA:InterPro.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
CDD; cd00205; rhv_like; 3.
InterPro; IPR015031; Capsid_VP4_Picornavir.
InterPro; IPR004080; FMDV_VP1_coat.
InterPro; IPR004004; Helic/Pol/Pept_Calicivir-typ.
InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir.
InterPro; IPR014759; Helicase_SF3_ssRNA_vir.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR008739; Peptidase_C28.
InterPro; IPR000199; Peptidase_C3A/C3B_picornavir.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR001676; Picornavirus_capsid.
InterPro; IPR033703; Rhv-like.
InterPro; IPR001205; RNA-dir_pol_C.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
Pfam; PF05408; Peptidase_C28; 1.
Pfam; PF00548; Peptidase_C3; 1.
Pfam; PF00680; RdRP_1; 1.
Pfam; PF00073; Rhv; 3.
Pfam; PF00910; RNA_helicase; 1.
Pfam; PF08935; VP4_2; 1.
PRINTS; PR00918; CALICVIRUSNS.
PRINTS; PR01542; FMDVP1COAT.
SUPFAM; SSF50494; SSF50494; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PROSITE; PS51218; SF3_HELICASE_2; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|SAAS:SAAS00124676};
Capsid protein {ECO:0000256|SAAS:SAAS00803779};
Complete proteome {ECO:0000313|Proteomes:UP000116386};
Helicase {ECO:0000256|SAAS:SAAS00124676};
Host cytoplasm {ECO:0000256|SAAS:SAAS00711571};
Host cytoplasmic vesicle {ECO:0000256|SAAS:SAAS00711589};
Host membrane {ECO:0000256|SAAS:SAAS00795395};
Host-virus interaction {ECO:0000256|SAAS:SAAS00711583};
Hydrolase {ECO:0000256|SAAS:SAAS00124676,
ECO:0000256|SAAS:SAAS00482329};
Ion channel {ECO:0000256|SAAS:SAAS00711569};
Ion transport {ECO:0000256|SAAS:SAAS00711569};
Membrane {ECO:0000256|SAAS:SAAS00795395};
Nucleotide-binding {ECO:0000256|SAAS:SAAS00124676};
Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00510600};
Protease {ECO:0000256|SAAS:SAAS00482329};
RNA-binding {ECO:0000256|SAAS:SAAS00711776};
RNA-directed RNA polymerase {ECO:0000256|SAAS:SAAS00510600};
Thiol protease {ECO:0000256|SAAS:SAAS00482329};
Transferase {ECO:0000256|SAAS:SAAS00510600};
Transport {ECO:0000256|SAAS:SAAS00711569};
Viral attachment to host cell {ECO:0000256|SAAS:SAAS00711583};
Viral ion channel {ECO:0000256|SAAS:SAAS00711569};
Viral RNA replication {ECO:0000256|SAAS:SAAS00664279};
Virion {ECO:0000256|SAAS:SAAS00711583, ECO:0000256|SAAS:SAAS00803779};
Virus entry into host cell {ECO:0000256|SAAS:SAAS00711583}.
DOMAIN 1186 1350 SF3 helicase.
{ECO:0000259|PROSITE:PS51218}.
DOMAIN 2093 2211 RdRp catalytic.
{ECO:0000259|PROSITE:PS50507}.
SEQUENCE 2333 AA; 259570 MW; 2DB5F6B089F0EE49 CRC64;
MDTTDCFVAL IHIFREIKAL FLSRTQGKME FTLHNGEKKT FYSRPNNHDN CWLNTILQLF
RYVDEPFFDW VYDSPENLTL EAIRQLEEVT GLELHEGGPP ALVIWNIKHL LHTGVGTASR
PSEVCMVDGT DMCLADFHAG IFLKGQEHAV FACVTSNGWY AIDDEDFYPW TPDPSDVLVF
VPYDQEPLNG EWKAKVQKRL KGAGQSSPAT GSQNQSGNTG SIINNYYMQQ YQNSMDTQLG
DNAISGGSNE GSTDTTSTHT NNTQNNDWFS RLASSAFSGL FGALLADKKT EETTLLEDRI
LTTRNGHTTS TTQSSVGVTY GYAVAEDAVS GPNTSGLETR VTQAERFFKK HLFDWTPDLS
FGHCHYLELP SEHKGVFGSL MSSYAYMRNG WDIEVTAVGN QFNGGCLLVA LVPELKELDT
RQKYQLTLFP HQFINPRTNM TAHINVPYVG VNRYDQYELH KPWTLVVMVV APLTVKTGGS
EQIKVYMNAA PTYVHVAGEL PSKEGIVPVA CVDGYGNMVT TDPKTADPVY GKVSNPPRTS
FPGRFTNFLD VAEACPTFLR FGEVPFVKTV NSGDRLLAKF DVSLAAGHMS NTYLAGLAQY
YTQYSGTMNI HFMFTGPTDA KARYMVAYIP PGMTPPTDPE RAAHCIHSEW DTGLNSKFTF
SIPYLSAADY AYTASDVAET TSVQGWVCIY QITHGKAEGD ALVVSVSAGK DFEFRLPVDA
RQQTTTTGES ADPVTTTVEN YGGETQTARR LHTDVAFVLD RFVKLTQPKS TQTLDLMQIP
SHTLVGALLR SATYYFSDLE VALVHTGPVT WVPNGAPKTA LNNHTNPTAY QKQPITRLAL
PYTAPHRVLS TVYNGKTTYG EESSRRGDLA ALARRVNNRL PTSFNYGAVK ADTITELLIR
MKRAETYCPR PLLALDTTQD RRKQEIIAPE KQTLNFDLLK LAGDVESNPG PFFFSDVRSN
FTKLVDTINQ MQEDMSTKHG PDFNRLVSAF EELATGVKAI RTGLDEAKPW YKLIKLLSRL
SCMAAVAARS KDPVLVAIML ADTGLEILDS TFVVKKISDS LSSLFHVPAP VFSFGAPVLL
AGLVKVASSF FRSTPEDLER AEKQLKARDI NDIFAILKNG EWLVKLILAI RDWIKAWIAS
EEKFVTMTDL VPGILEKQRD LNDPSKYEEA KEWLDNARQA CLKSGNVHIA NLCKVIAPAP
SKSRPEPVVV CLRGKSGQGK SFLANVLAQA ISTHFTGRTD SVWYCPPDPD HFDGYNQQTV
VVMDDLGQNP DGKDFKYFAQ MVSTTGFIPP MASLEDKGKP FNSKVIIATT NLYSGFTPRT
MVCPDALNRR FHFDIDVSAK DGYKINNKLD IIKALEDTHT NPVAMFQYDC ALINGMAVEM
KRMQQDMFKP QPPLQNVYQL VQEVIDRVEL HEKVSSHPIF KQISIPSQKS VLYFLIEKGQ
HEAAIEFFEG MVHDSIKEEL RPLIQQTSFV KRAFKRLKEN FEIVALCLTL LANIVIMIRE
TRKRQQMVND AVNEYIDKAN ITTDDKTLDE AEKNPLETSG ASTVGFRERT LPGRKTSDDV
NSEPVKPVEE QPQAEGPYAG PLERQKPLKV RAKLPQQEGP YAGPMERQKP LKVKAKAPVV
KEGPYEGPVK KPVALKVKAK NLIVTESGAP PTDLQKMVMG NTKPVELILD GKTVAICCAT
GVFGTAYLVP RHLFAEKYDK IMLDGRAMTD SDYRVFEFEI KVKGQDMLSD AALMVLHRGN
RVRDITKHFR DVAKMKKGTP VVGVINNADV GRLIFSGEAL TYKDIVVCMD GDTMPGLFAY
KAVTRAGYCG GAVLAKDGAE TFIVGTHSAG GNGVGYCSCV SRSMLLKMKA HIDPEPHHEG
LVVDTRDVEE RVHVMRKTKL APTVAHGVFN PEFGPAALSN KDPRLNEGVV LDEVIFSKHK
GDTKMSEEDK ALFRRCAADY ASRLHSVLGT ANAPLSIYEA IKGVDGLDAM EPDTAPGLPW
ALQGKRRGAL IDFENGTVGP EIEAALKLME KREYKFACQT FLKDEIRPME KVRAGKTRIV
DVLPVEHILY TRMMIGRFCA QMHSNNGPQI GSAVGCNPDV DWQRFGTHFA QYRNVWDVDY
SAFDANHCSD AMNIMFEEVF RTEFGFHPNA EWILKTLVNT EHAYENKRIV VEGGMPSGCS
ATSIINTILN NIYVLYALRR HYEGVELDTY TMISYGDDIV VASDYDLDFE ALKPHFKSLG
QTITPADKSD KGFVLGHSIT DVTFLKRHFH MDYGTGFYKP VMASKTLEAI LSFARRGTIQ
EKLISVAGLA VHSGPDEYRR LFEPFQGLFE IPSYRSLYLR WVNAVCGDAQ SLR


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