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Genome polyprotein

 I7AUT3_9PICO            Unreviewed;      2185 AA.
I7AUT3;
03-OCT-2012, integrated into UniProtKB/TrEMBL.
03-OCT-2012, sequence version 1.
23-MAY-2018, entry version 46.
RecName: Full=Genome polyprotein {ECO:0000256|SAAS:SAAS00958788};
Human parechovirus 5.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Picornavirales; Picornaviridae; Parechovirus.
NCBI_TaxID=376148 {ECO:0000313|EMBL:AFO10976.1, ECO:0000313|Proteomes:UP000146747};
[1] {ECO:0000313|EMBL:AFO10976.1, ECO:0000313|Proteomes:UP000146747}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=CH-ZJ1 {ECO:0000313|EMBL:AFO10976.1};
PubMed=22843855; DOI=10.1128/JVI.01241-12;
Sun G., Wang Y., Tao G., Shen Q., Cao W., Chang X., Zhang W., Shao C.,
Yi M., Shao S., Yang Y.;
"Complete genome sequence of a novel type of human parechovirus strain
reveals natural recombination events.";
J. Virol. 86:8892-8893(2012).
-!- CATALYTIC ACTIVITY: NTP + H(2)O = NDP + phosphate.
{ECO:0000256|SAAS:SAAS00711622}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|SAAS:SAAS00383097}.
-!- CATALYTIC ACTIVITY: Selective cleavage of Gln-|-Gly bond in the
poliovirus polyprotein. In other picornavirus reactions Glu may be
substituted for Gln, and Ser or Thr for Gly.
{ECO:0000256|SAAS:SAAS00711755}.
-!- SUBCELLULAR LOCATION: Host cytoplasmic vesicle membrane
{ECO:0000256|SAAS:SAAS00711512}; Peripheral membrane protein
{ECO:0000256|SAAS:SAAS00711512}; Cytoplasmic side
{ECO:0000256|SAAS:SAAS00711512}. Virion
{ECO:0000256|SAAS:SAAS01033941}.
-!- SIMILARITY: Belongs to the picornaviruses polyprotein family.
{ECO:0000256|SAAS:SAAS00727971}.
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EMBL; JX050181; AFO10976.1; -; Genomic_RNA.
Proteomes; UP000146747; Genome.
GO; GO:0044162; C:host cell cytoplasmic vesicle membrane; IEA:UniProtKB-SubCell.
GO; GO:0044385; C:integral to membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO; GO:0019015; C:viral genome; IEA:InterPro.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
GO; GO:0005216; F:ion channel activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0039707; P:pore formation by virus in membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0051259; P:protein complex oligomerization; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
CDD; cd00205; rhv_like; 2.
Gene3D; 2.60.120.20; -; 4.
InterPro; IPR004004; Helic/Pol/Pept_Calicivir-typ.
InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir.
InterPro; IPR014759; Helicase_SF3_ssRNA_vir.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000199; Peptidase_C3A/C3B_picornavir.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR001676; Picornavirus_capsid.
InterPro; IPR033703; Rhv-like.
InterPro; IPR001205; RNA-dir_pol_C.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
InterPro; IPR029053; Viral_coat.
InterPro; IPR009419; VPP_parechovir_P3A.
InterPro; IPR009407; VPP_parechovir_P3B.
Pfam; PF06344; Parecho_VpG; 1.
Pfam; PF00548; Peptidase_C3; 1.
Pfam; PF06363; Picorna_P3A; 1.
Pfam; PF00680; RdRP_1; 1.
Pfam; PF00073; Rhv; 1.
Pfam; PF00910; RNA_helicase; 1.
PRINTS; PR00918; CALICVIRUSNS.
SUPFAM; SSF50494; SSF50494; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PROSITE; PS51218; SF3_HELICASE_2; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|SAAS:SAAS01033926};
Capsid protein {ECO:0000256|SAAS:SAAS00958801};
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000146747};
Helicase {ECO:0000256|SAAS:SAAS01033926};
Host cytoplasm {ECO:0000256|SAAS:SAAS00711571};
Host cytoplasmic vesicle {ECO:0000256|SAAS:SAAS00711589};
Host membrane {ECO:0000256|SAAS:SAAS00795395};
Host-virus interaction {ECO:0000256|SAAS:SAAS00711583};
Hydrolase {ECO:0000256|SAAS:SAAS01033926,
ECO:0000256|SAAS:SAAS01035925};
Ion channel {ECO:0000256|SAAS:SAAS00711569};
Ion transport {ECO:0000256|SAAS:SAAS00711569};
Membrane {ECO:0000256|SAAS:SAAS00795395};
Nucleotide-binding {ECO:0000256|SAAS:SAAS01033926};
Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00510600};
Protease {ECO:0000256|SAAS:SAAS01035925};
RNA-binding {ECO:0000256|SAAS:SAAS00711776};
RNA-directed RNA polymerase {ECO:0000256|SAAS:SAAS00510600};
Thiol protease {ECO:0000256|SAAS:SAAS01035925};
Transferase {ECO:0000256|SAAS:SAAS00510600};
Transport {ECO:0000256|SAAS:SAAS00711569};
Viral attachment to host cell {ECO:0000256|SAAS:SAAS00711583};
Viral ion channel {ECO:0000256|SAAS:SAAS00711569};
Viral RNA replication {ECO:0000256|SAAS:SAAS00664279};
Virion {ECO:0000256|SAAS:SAAS00711583, ECO:0000256|SAAS:SAAS00958801};
Virus entry into host cell {ECO:0000256|SAAS:SAAS00711583}.
DOMAIN 1162 1323 SF3 helicase.
{ECO:0000259|PROSITE:PS51218}.
DOMAIN 1950 2064 RdRp catalytic.
{ECO:0000259|PROSITE:PS50507}.
COILED 1355 1375 {ECO:0000256|SAM:Coils}.
SEQUENCE 2185 AA; 246547 MW; 8CB8B62F7D4AF523 CRC64;
METIKNIADM ATGITNTIDD SVNTLSESFS KIGNDSGGEI LTRVADDASS VLGPNCLAST
SMPENKDVVQ ATTTVNTTNL TQHPSAPTMP FTPDFTNVDN FHSMAYDVTT GDKNPSKLIR
LDTTTWQHTW PRQHLINDVQ LPKAFWDKNS KPAYGQSRYF AAVRCGFHFQ VQINVNQGTA
GCALVVYEPK PIVTHGSHLE FGSFTNLPHV LMNLAETTQA DLCIPYVSDT NYVKTDSSDL
GRLRVYVWTP LTIPSSATND VDVTVLGSLL QLDFQNPRTY DTDVDIYDNN PDVKSKKKLY
VRKKKLMTMS TKYKWTRTKV DIAEGPGSMN MANVLSTTGA QSIALVGERA FYDPRTAGSK
SRFSDMIHIA QLFSVMSDTT TPSTSSGIDD FGYFDWSATY VPQQVIHRNV VKLSQFSNLK
PFVNAYTYFR GSLVLRMSVY ASTFNRGRLR MGFFPNFTTN TTSEMDNAIY TICDIGSDNS
FEITIPYTFS TWMRKTDGRP LGLFQVEVLN RLTYNSSCPN KVHCIVQGRL GNDARFYCPT
GSLVEFQNSW GSQMDLSDPL CIEDNEMEDC KQTISPDELG LTSAQDDGPL GVEKPNYFLN
FRAINVDIFT VSHTKVDNIF GRAWLAHEHT SADDGTWRVN LDFPTQGHGT LTRLFTYYSG
ELNVHVLYLS DNGFLRVTHA YDHNDNRSNF LSSNGVITVP AGEQMTLSVP FYSSKPLRTI
RDSGALGRLI CKPLLSGTHN GKIEVYLSLR CPNLFFPSPA PKQKTSRAIM SGNPFEDESS
YNTTSGKQTM KLAYLDRGFY KHYGIIVDDY VYQLDSDDIF KTALTGKAKF TKTKLSPDWV
VEEECELDYF RVKYLESSVN SEHIFSVDSN CETLAKDIFG SHTLSQHQAI GLIGTILLTA
GLMSTIKTPV NTTTIKEFFN HAIDGDEQGL SLLVQKCTTF FSSAATEILD NDLVKFIVKI
LVRILCYMVL YCHKPNILTT ACLSTLLIMD VTSSSVLSPS CKALMQCLID GDVKKLAEVV
AESMSNTDDE EIKEQICDTV KYTKTILSNQ GPFKGFNEVS TAFRHIDWWI HTLLKIKDMV
LSVFKPSMES RAIQWLERNK EHVCAILDYA SDIIVESKDQ TKMKSQEFYQ KYTDCLSKFK
PIMAICFRSC HNSISNTVYR LFQELARIPS RISTQNDLIR VEPIGVWIQG EPGQGKSFLT
HTLSRQLQKS CKLNGVYTNP TASEFMDGYD NQDIHLIDDL GQTRKEKDIE MLCNCISSVP
FIVPMAHLEE KGKFYTSKLV IATTNKSDFS STVLQDSGTL KRRFPYIMHI RAAKAYSKSG
KLNVSQAMSV MSTGECWEVS KNGRDWETLK LKDLVQKITE DYQERQKNYN AWKQQLENQT
LDDLDDAVSY IKHNFPDAIP YIDEYLNIEM STLIEQMEAF IEPRPSVFKC FANKVATQTR
KAAKEVVDWF SSKIKSMLSF VERNKAWLTV VSAVTSAISI LLLVTKIFKK EESKDERAYN
PTLPVTKPKG TFPVSQREFK NEAPYDGQLE HIISQMAYIT GSTTGHLTHC AGYQHDEIIL
HGRSIKYLEQ EEGLTLHYKN KVFPIENPSV TQVTLGGKPM DLAILKCKLP FRFKKNSKYY
TNKIGTESML VWMTEQGIIT KEVQRVHHSG GIKTREGTES TKTISYTVKS CKGMCGGLLI
SKVEGNFKIL GMHIAGNGEM GVAIPFNFLK NDMSDQGIVT EVTPIQPMYI NTKTQIHKSP
VYGAVEVKMG PAVLSKSDPR LKEPVECLIK KSASKYRVNK FQVNNELWQG VKACVKSKFR
EIFGVNGIVD MKTAILGTSH VNSMDLSTSA GYSFVKSGYK KKDLICLEPF SVSPMLEKLV
QDKFHALLKG NQITTIFNTC LKDELRKLDK ISAGKTRCIE ACEVDYCIVY RMIMMEIYDK
IYQTPCYYSG LAVGINPYKD WHFMVNALND YNYEMDYSQY DGSLSSMLLW EAVEVLAYCH
DSPDLVMQLH KPVIDSDHVV FNERWLIHGG MPSGSPCTTV LNSLCNLMMC IYTTNLISPG
IDCLPIVYGD DVILSLDKEI DPEKLQSIMA DSFGAEVTGS RKDEPPSLKT RLEVEFLKRK
PGYFPESTFI VGKLDTENMI QHLMWMKNFS TFKQQLQSYL MELCLHGKDT YLHYIKILDP
YLKEWNITVD DYDVVIAKLM PMVFD


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