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Genome polyprotein

 K4K095_9PICO            Unreviewed;      2180 AA.
K4K095;
09-JAN-2013, integrated into UniProtKB/TrEMBL.
09-JAN-2013, sequence version 1.
23-MAY-2018, entry version 42.
RecName: Full=Genome polyprotein {ECO:0000256|SAAS:SAAS00958788};
Human parechovirus 1.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Picornavirales; Picornaviridae; Parechovirus.
NCBI_TaxID=12063 {ECO:0000313|EMBL:AFU90742.1, ECO:0000313|Proteomes:UP000123337};
[1] {ECO:0000313|EMBL:AFU90742.1, ECO:0000313|Proteomes:UP000123337}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=SH401 {ECO:0000313|EMBL:AFU90742.1};
PubMed=23043176; DOI=10.1128/JVI.02099-12;
Wang C., Shan T., Zheng H., Tong W., Chen F., Hu H., He Q., Tong G.;
"Complete genome sequence of a novel human parechovirus.";
J. Virol. 86:11945-11946(2012).
-!- CATALYTIC ACTIVITY: NTP + H(2)O = NDP + phosphate.
{ECO:0000256|SAAS:SAAS00711622}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|SAAS:SAAS00383097}.
-!- CATALYTIC ACTIVITY: Selective cleavage of Gln-|-Gly bond in the
poliovirus polyprotein. In other picornavirus reactions Glu may be
substituted for Gln, and Ser or Thr for Gly.
{ECO:0000256|SAAS:SAAS00711755}.
-!- SUBCELLULAR LOCATION: Host cytoplasmic vesicle membrane
{ECO:0000256|SAAS:SAAS00711512}; Peripheral membrane protein
{ECO:0000256|SAAS:SAAS00711512}; Cytoplasmic side
{ECO:0000256|SAAS:SAAS00711512}. Virion
{ECO:0000256|SAAS:SAAS01033941}.
-!- SIMILARITY: Belongs to the picornaviruses polyprotein family.
{ECO:0000256|SAAS:SAAS00727971}.
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EMBL; JX441355; AFU90742.1; -; Genomic_RNA.
Proteomes; UP000123337; Genome.
GO; GO:0044162; C:host cell cytoplasmic vesicle membrane; IEA:UniProtKB-SubCell.
GO; GO:0044385; C:integral to membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO; GO:0019015; C:viral genome; IEA:InterPro.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
GO; GO:0005216; F:ion channel activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0039707; P:pore formation by virus in membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0051259; P:protein complex oligomerization; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
CDD; cd00205; rhv_like; 2.
Gene3D; 2.60.120.20; -; 3.
InterPro; IPR004004; Helic/Pol/Pept_Calicivir-typ.
InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir.
InterPro; IPR014759; Helicase_SF3_ssRNA_vir.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000199; Peptidase_C3A/C3B_picornavir.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR001676; Picornavirus_capsid.
InterPro; IPR033703; Rhv-like.
InterPro; IPR001205; RNA-dir_pol_C.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
InterPro; IPR029053; Viral_coat.
InterPro; IPR009419; VPP_parechovir_P3A.
InterPro; IPR009407; VPP_parechovir_P3B.
Pfam; PF06344; Parecho_VpG; 1.
Pfam; PF00548; Peptidase_C3; 1.
Pfam; PF06363; Picorna_P3A; 1.
Pfam; PF00680; RdRP_1; 1.
Pfam; PF00073; Rhv; 1.
Pfam; PF00910; RNA_helicase; 1.
PRINTS; PR00918; CALICVIRUSNS.
SUPFAM; SSF50494; SSF50494; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PROSITE; PS51218; SF3_HELICASE_2; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|SAAS:SAAS01033926};
Capsid protein {ECO:0000256|SAAS:SAAS00958801};
Complete proteome {ECO:0000313|Proteomes:UP000123337};
Helicase {ECO:0000256|SAAS:SAAS01033926};
Host cytoplasm {ECO:0000256|SAAS:SAAS00711571};
Host cytoplasmic vesicle {ECO:0000256|SAAS:SAAS00711589};
Host membrane {ECO:0000256|SAAS:SAAS00795395};
Host-virus interaction {ECO:0000256|SAAS:SAAS00711583};
Hydrolase {ECO:0000256|SAAS:SAAS01033926,
ECO:0000256|SAAS:SAAS01035925};
Ion channel {ECO:0000256|SAAS:SAAS00711569};
Ion transport {ECO:0000256|SAAS:SAAS00711569};
Membrane {ECO:0000256|SAAS:SAAS00795395};
Nucleotide-binding {ECO:0000256|SAAS:SAAS01033926};
Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00510600};
Protease {ECO:0000256|SAAS:SAAS01035925};
RNA-binding {ECO:0000256|SAAS:SAAS00711776};
RNA-directed RNA polymerase {ECO:0000256|SAAS:SAAS00510600};
Thiol protease {ECO:0000256|SAAS:SAAS01035925};
Transferase {ECO:0000256|SAAS:SAAS00510600};
Transport {ECO:0000256|SAAS:SAAS00711569};
Viral attachment to host cell {ECO:0000256|SAAS:SAAS00711583};
Viral ion channel {ECO:0000256|SAAS:SAAS00711569};
Viral RNA replication {ECO:0000256|SAAS:SAAS00664279};
Virion {ECO:0000256|SAAS:SAAS00711583, ECO:0000256|SAAS:SAAS00958801};
Virus entry into host cell {ECO:0000256|SAAS:SAAS00711583}.
DOMAIN 1157 1318 SF3 helicase.
{ECO:0000259|PROSITE:PS51218}.
DOMAIN 1945 2059 RdRp catalytic.
{ECO:0000259|PROSITE:PS50507}.
SEQUENCE 2180 AA; 245970 MW; D31B6A83DBB6921D CRC64;
METIKNIADM ATGVVSSVDS TINAVNEKVE NVGNEIGGNL LTKVADDASN VLGPNCFATT
AEPENKNVVQ ATTTVNTTNL TQHPSAPTMP FSPDFSNVDN FHSMAYDITT GDKNPSKLVR
LETHEWTPSW ARGHQITHVE LPKVFWNNQD KPAYGQSRYF AAVRCGFHFQ VQVNVNQGTA
GSALVVYEPK PVVTYDSRLE FGAFTNLPHV LMNLAETTQA DLCIPYVADT NYVKTDSSDL
GQLKVYVWTP LTIPTGSANQ VDVTILGSLL QLDFQNPRVF GQDVSIYDNG PNTKKKNWKK
IMTMSTKYKW TRTKVDIAEG PGSMNMANVL STTGAQSVAL VGERAFYDPR TAGSRSRFDD
LVKISQLFSV MADSTTPSEN HGVDAKGYFK WSATTAPQSI VHRNIVYLKL FPNLNVFVNS
YSYFRGSLIL RLSVYASTFN RGRLRMGFFP NATEESTSTL DNAIYTICDI GSDNSFEITI
PYSFSTWMRK TDGHAIGLFQ IEVLNRLTYN SSSPSEVYCI VQGEMGQDAR FFCPTGSVVT
FQNSWGSQMD LTDPLCLEDD TENCKQTMSP DELGLTSAQD DGPLGQEKPN YFLNFRSMNV
DIFTVSHTKV DNLFGRAWFF QEHTFTNEGQ WRVPLEFPKQ GHGSLSLLFA YFTGELNIHV
LFLGERGFLR IAHTYDTSEN RVNFLSSNGV ITVPAGEQMT LSAPYYSNKP LRTVRDSNSL
GYLMCKPFLT GTTTGKIEVY LSLRCPNFFF PLPAPKVTSG RTLRGDMANL SNQSPYAEQT
QKQTMKLAYL DRGFYKHYGI IVDEYVYQLD SDDIFKTALT GKAKFTKTKL TPDWVIEEEC
ELDYFRVKYL ESSVNSEHIF SVDSNCETIA KDIFGTHTLS QHQAIGLIGT ILLTAGLMST
IKTPVKATTI KEFFNHAIDG DEQGLSLLVQ KCTTFSSSAA TEILDNDLVK FIVKILVRIL
CYMVLYCHKP NILTTACLST LLIMDVTSSS VLSPSCKALM QCLMDGDVKK LAEVVAESMS
NTDDEEIKEQ ICDTVKYTKT ILSNQGPFKG FNEVSTAFRH IDWWIHTLLK IKDMVISVFK
PSMESKAIQW LERNKEHVCA ILDYASDIIV ESKDQTKMKS QEFYQKYTDC LSKFKPIMAI
CFRSCHNSIS NTVYRLFQEL ARIPSRISTQ NDLIRVEPIG VWIQGEPGQG KSFLTHTLSR
QLQKSCKLNG VYTNPTASEF MDGYDNQDIH LIDDLGQTRK EKDIEMLCNC ISSVPFIVPM
AHLEEKGKFY TSKLVIATTN KSDFSSTVLQ DSGALKRRFP YIMHIRAAKA YSKSGKLNIS
QAMSTMATGE CWEVSKNGRD WETLKLQDLV KKITEDYEER QKNYNCWKQQ LENQTLDDLD
DAVSYIKHNF PDAIPYIDEY LNIEMSTLIE QMEAFIEPRP SVFKCFANKV ATQTRKAAKE
VVEWFSSKIK SMLSFVERNK AWLTVVSAVT SAISILLLVT KIFKKEESKD ERAYNPTLPA
TKPKGTFPVS QREFKNEAPY DGQLEHIISQ MAYITGSTTG HLTHCAGYQH DEVILHGHSI
KYLEQEEDLT LHYKNKVFPI EHPSVTQVTL GGKPMDLAIL KCKLPFRFKK NSKYYTNKIG
TESMLIWMTE QGIITKEVHR VHHSGGIKTR EGTESTKTIS YTVKSCKGMC GGLLISKVEG
NFKILGMHIA GNGEMGVAIP FNFLKNDMSD QGIVTEVTPI QPMYINTKSQ IHKSPVYGAV
EVKMGPAVLS KSDARLEEPV DCLIKKSASK YRVNKFQVNN ELWQGVKACV KSKFREIFGI
NGIVDIKTAI LGTSHVNSMD LSTSAGYSFV KSGYKKKDLI CLEPFSVSPM LEKLVQDKFH
NLLKGNQITT IFNTCLKDEL RKLDKIACGK TRCIEACEVD YCIVYRMIMM EIYDKIYQTP
CYYSGLAVGI NPYKDWHFMI NALNDYNYEM DYSQYDGSLS SMLLWEAVEV LAYCHDSPDL
VMQLHKPVID SDHVVFNERW LIHGGMPSGS PCTTVLNSLC NLMMCIYTTN LISPGIDCLP
IVYGDDVILS LDKEIEPEKL QSIMADSFGA EVTGSRKDEP PSLKPRMEVE FLKRKPGYFP
ESTFIVGKLD TENMIQHLMW MKNFSTFKQQ LQSYLMELCL HGKDIYQHYI KILDPYLKEW
NIIVDDYDVV IAKLMPMVFD


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