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Genome polyprotein (Fragment)

 B9DF74_WNV              Unreviewed;       791 AA.
B9DF74;
24-MAR-2009, integrated into UniProtKB/TrEMBL.
24-MAR-2009, sequence version 1.
22-NOV-2017, entry version 47.
SubName: Full=Polyprotein {ECO:0000313|EMBL:CAX41893.1};
Flags: Fragment;
Name=genomic RNA {ECO:0000313|EMBL:CAX41893.1};
West Nile virus strain PT6.39.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Flaviviridae; Flavivirus; Japanese encephalitis virus group.
NCBI_TaxID=598675 {ECO:0000313|EMBL:CAX41893.1};
[1] {ECO:0000313|EMBL:CAX41893.1}
NUCLEOTIDE SEQUENCE.
STRAIN=PT6.39 {ECO:0000313|EMBL:CAX41893.1};
PubMed=16417437; DOI=10.1089/vbz.2005.5.410;
Esteves A., Almeida A.P., Galao R.P., Parreira R., Piedade J.,
Rodrigues J.C., Sousa C.A., Novo M.T.;
"West Nile virus in Southern Portugal, 2004.";
Vector Borne Zoonotic Dis. 5:410-413(2005).
[2] {ECO:0000313|EMBL:CAX41893.1}
NUCLEOTIDE SEQUENCE.
STRAIN=PT6.39 {ECO:0000313|EMBL:CAX41893.1};
PubMed=17896871; DOI=10.1089/vbz.2006.0632;
Parreira R., Severino P., Freitas F., Piedade J., Almeida A.P.,
Esteves A.;
"Two distinct introductions of the West Nile virus in Portugal
disclosed by phylogenetic analysis of genomic sequences.";
Vector Borne Zoonotic Dis. 7:344-352(2007).
[3] {ECO:0000313|EMBL:CAX41893.1}
NUCLEOTIDE SEQUENCE.
STRAIN=PT6.39 {ECO:0000313|EMBL:CAX41893.1};
Parreira R.;
Submitted (FEB-2009) to the EMBL/GenBank/DDBJ databases.
-!- SUBCELLULAR LOCATION: Host endoplasmic reticulum membrane
{ECO:0000256|SAAS:SAAS00536713}; Multi-pass membrane protein
{ECO:0000256|SAAS:SAAS00536713}.
-!- SUBCELLULAR LOCATION: Host endoplasmic reticulum membrane
{ECO:0000256|SAAS:SAAS00536731}; Peripheral membrane protein
{ECO:0000256|SAAS:SAAS00536731}; Lumenal side
{ECO:0000256|SAAS:SAAS00536731}.
-!- SUBCELLULAR LOCATION: Secreted {ECO:0000256|SAAS:SAAS00536690}.
-!- SUBCELLULAR LOCATION: Virion membrane
{ECO:0000256|SAAS:SAAS00944678}; Multi-pass membrane protein
{ECO:0000256|SAAS:SAAS00944678}.
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EMBL; AJ965630; CAX41893.1; -; Genomic_RNA.
GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO; GO:0044167; C:host cell endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO; GO:0019031; C:viral envelope; IEA:InterPro.
GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0008236; F:serine-type peptidase activity; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0039654; P:fusion of virus membrane with host endosome membrane; IEA:UniProtKB-KW.
GO; GO:0039520; P:induction by virus of host autophagy; IEA:UniProtKB-KW.
GO; GO:0039564; P:suppression by virus of host STAT2 activity; IEA:UniProtKB-KW.
GO; GO:0039502; P:suppression by virus of host type I interferon-mediated signaling pathway; IEA:UniProtKB-KW.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
CDD; cd12149; Flavi_E_C; 1.
Gene3D; 2.60.40.350; -; 1.
Gene3D; 3.30.387.10; -; 1.
Gene3D; 3.30.67.10; -; 1.
InterPro; IPR000069; Env_glycoprot_M_flavivir.
InterPro; IPR013755; Flav_gly_cen_dom_subdom1.
InterPro; IPR001122; Flavi_capsidC.
InterPro; IPR037172; Flavi_capsidC_sf.
InterPro; IPR027287; Flavi_E_Ig-like.
InterPro; IPR026470; Flavi_E_Stem/Anchor_dom.
InterPro; IPR002535; Flavi_propep.
InterPro; IPR000336; Flavivir/Alphavir_Ig-like_sf.
InterPro; IPR011998; Glycoprot_cen/dimer.
InterPro; IPR036253; Glycoprot_cen/dimer_sf.
InterPro; IPR013756; GlyE_cen_dom_subdom2.
InterPro; IPR014756; Ig_E-set.
Pfam; PF01003; Flavi_capsid; 1.
Pfam; PF02832; Flavi_glycop_C; 1.
Pfam; PF00869; Flavi_glycoprot; 1.
Pfam; PF01004; Flavi_M; 1.
Pfam; PF01570; Flavi_propep; 1.
SUPFAM; SSF101257; SSF101257; 1.
SUPFAM; SSF56983; SSF56983; 1.
SUPFAM; SSF81296; SSF81296; 1.
TIGRFAMs; TIGR04240; flavi_E_stem; 1.
4: Predicted;
Capsid protein {ECO:0000256|SAAS:SAAS00944784};
Disulfide bond {ECO:0000256|SAAS:SAAS00139753};
Fusion of virus membrane with host endosomal membrane
{ECO:0000256|SAAS:SAAS00489633};
Fusion of virus membrane with host membrane
{ECO:0000256|SAAS:SAAS00489633};
Host endoplasmic reticulum {ECO:0000256|SAAS:SAAS00006452};
Host membrane {ECO:0000256|SAAS:SAAS00944684};
Host-virus interaction {ECO:0000256|SAAS:SAAS00944767};
Membrane {ECO:0000256|SAAS:SAAS00944681,
ECO:0000256|SAAS:SAAS00944684, ECO:0000256|SAM:Phobius};
Secreted {ECO:0000256|SAAS:SAAS00007119};
Transmembrane {ECO:0000256|SAAS:SAAS00944681,
ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAAS:SAAS00944681,
ECO:0000256|SAM:Phobius};
Viral attachment to host cell {ECO:0000256|SAAS:SAAS00944767};
Viral penetration into host cytoplasm {ECO:0000256|SAAS:SAAS00489633};
Virion {ECO:0000256|SAAS:SAAS00944767, ECO:0000256|SAAS:SAAS00944784};
Virus entry into host cell {ECO:0000256|SAAS:SAAS00489633,
ECO:0000256|SAAS:SAAS00944767}.
TRANSMEM 44 66 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 107 126 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 250 269 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 276 292 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 743 764 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 771 789 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 6 123 Flavi_capsid. {ECO:0000259|Pfam:PF01003}.
DOMAIN 131 214 Flavi_propep. {ECO:0000259|Pfam:PF01570}.
DOMAIN 219 290 Flavi_M. {ECO:0000259|Pfam:PF01004}.
DOMAIN 293 589 Flavi_glycoprot.
{ECO:0000259|Pfam:PF00869}.
DOMAIN 592 689 Flavi_glycop_C.
{ECO:0000259|Pfam:PF02832}.
NON_TER 791 791 {ECO:0000313|EMBL:CAX41893.1}.
SEQUENCE 791 AA; 85367 MW; 8568581F44FC3CC3 CRC64;
MSKKPGGPGK SRAVNMLKRG MPRVLSLIGL KRAMLSLIDG KGPIRFVLAL LAFFRFTAIA
PTRAVLDRWR GVNKQTAMKH LLSFKKELGT LTSAINRRSS KQKKRGGKTG IAVMIGLIAS
VGAVTLSNFQ GKVMMTVNAT DVTDVITIPT AAGKNLCIVR AMDVGYMCDD TITYECPVLS
AGNDPEDIDC WCTKSAVYVR YGRCTKTRHS RRSRRSLTVQ THGESTLANK KGAWMDSTKA
TRYLVKTESW ILRNPGYALV AAVIGWMLGS NTMQRVVFVV LLLLVAPAYS FNCLGMSNRD
FLEGVSGATW VDLVLEGDSC VTIMSKDKPT IDVKMMNMEA ANLAEVRSYC YLATVSDLST
KAACPTMGEA HNDKRADPAF VCRQGVVDRG WGNGCGLFGK GSIDTCAKFA CSTKATGRTI
LKENIKYEVA IFVHGPTTVE SHGNYSTQIG ATQAGRFSIT PAAPSYTLKL GEYGEVTVDC
EPRSGIDTNA YYVMTVGTKT FLVHREWFMD LNLPWSSAGS TVWRNRETLM EFEEPHATKQ
SVIALGSQEG ALHQALAGAI PVEFSSNTVK LTSGHLKCRV KMEKLQLKGT TYGVCSKAFK
FLGTPADTGH GTVVLELQYT GTDGPCKVPI SSVASLNDLT PVGRLVTVNP FVSVATANAK
VLIELEPPFG DSYIVVGRGE QQINHHWHKS GSSIGKAFTT TLKGAQRLAA LGDTAWDFGS
VGGVFTSVGK AVHQVFGGAF RSLFGGMSWI TQGLLGALLL WMGINARDRS IALTFLAVGG
VLLFLSVNVH A


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