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Genome polyprotein (Fragment)

 S6DET3_9ENTO            Unreviewed;      1370 AA.
S6DET3;
16-OCT-2013, integrated into UniProtKB/TrEMBL.
16-OCT-2013, sequence version 1.
25-OCT-2017, entry version 30.
RecName: Full=Genome polyprotein {ECO:0000256|SAAS:SAAS00711595};
Flags: Fragment;
Echovirus E18.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Picornavirales; Picornaviridae; Enterovirus; Enterovirus B.
NCBI_TaxID=47506 {ECO:0000313|EMBL:CCW33479.1};
[1] {ECO:0000313|EMBL:CCW33479.1}
NUCLEOTIDE SEQUENCE.
STRAIN=E18_CF506_FRA00 {ECO:0000313|EMBL:CCW33479.1};
PubMed=24006446; DOI=10.1128/JVI.02075-13;
Henquell C., Mirand A., Richter J., Schuffenecker I., Bottiger B.,
Diedrich S., Terletskaia-Ladwig E., Christodoulou C.,
Peigue-Lafeuille H., Bailly J.L.;
"Phylogenetic Patterns of Human Coxsackievirus B5 Arise from
Population Dynamics between Two Genogroups and Reveal Evolutionary
Factors of Molecular Adaptation and Transmission.";
J. Virol. 87:12249-12259(2013).
[2] {ECO:0000313|EMBL:CCW33479.1}
NUCLEOTIDE SEQUENCE.
STRAIN=E18_CF506_FRA00 {ECO:0000313|EMBL:CCW33479.1};
Bailly J.;
Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases.
-!- CATALYTIC ACTIVITY: NTP + H(2)O = NDP + phosphate.
{ECO:0000256|SAAS:SAAS00817576}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|SAAS:SAAS00711625}.
-!- CATALYTIC ACTIVITY: Selective cleavage of Gln-|-Gly bond in the
poliovirus polyprotein. In other picornavirus reactions Glu may be
substituted for Gln, and Ser or Thr for Gly.
{ECO:0000256|SAAS:SAAS00711755}.
-!- SUBCELLULAR LOCATION: Host cytoplasmic vesicle membrane
{ECO:0000256|SAAS:SAAS00711512}; Peripheral membrane protein
{ECO:0000256|SAAS:SAAS00711512}; Cytoplasmic side
{ECO:0000256|SAAS:SAAS00711512}.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000256|SAAS:SAAS00803776}.
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EMBL; HF948104; CCW33479.1; -; Genomic_RNA.
GO; GO:0044162; C:host cell cytoplasmic vesicle membrane; IEA:UniProtKB-SubCell.
GO; GO:0044385; C:integral to membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
GO; GO:0005216; F:ion channel activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0039707; P:pore formation by virus in membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0051259; P:protein oligomerization; IEA:UniProtKB-KW.
GO; GO:0018144; P:RNA-protein covalent cross-linking; IEA:InterPro.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
CDD; cd00205; rhv_like; 1.
InterPro; IPR003593; AAA+_ATPase.
InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir.
InterPro; IPR014759; Helicase_SF3_ssRNA_vir.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR014838; P3A.
InterPro; IPR036203; P3A_soluble_dom.
InterPro; IPR000081; Peptidase_C3.
InterPro; IPR000199; Peptidase_C3A/C3B_picornavir.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR002527; Pico_P2B.
InterPro; IPR001676; Picornavirus_capsid.
InterPro; IPR033703; Rhv-like.
InterPro; IPR001205; RNA-dir_pol_C.
Pfam; PF08727; P3A; 1.
Pfam; PF00548; Peptidase_C3; 1.
Pfam; PF00947; Pico_P2A; 1.
Pfam; PF01552; Pico_P2B; 1.
Pfam; PF00680; RdRP_1; 1.
Pfam; PF00073; Rhv; 1.
Pfam; PF00910; RNA_helicase; 1.
ProDom; PD001306; Peptidase_C3; 1.
ProDom; PD649346; Pico_P2B; 1.
SMART; SM00382; AAA; 1.
SUPFAM; SSF50494; SSF50494; 2.
SUPFAM; SSF52540; SSF52540; 1.
SUPFAM; SSF89043; SSF89043; 1.
PROSITE; PS51218; SF3_HELICASE_2; 1.
4: Predicted;
ATP-binding {ECO:0000256|SAAS:SAAS00124676};
Capsid protein {ECO:0000256|SAAS:SAAS00803779};
Helicase {ECO:0000256|SAAS:SAAS00124676};
Host cytoplasm {ECO:0000256|SAAS:SAAS00711571};
Host cytoplasmic vesicle {ECO:0000256|SAAS:SAAS00711589};
Host membrane {ECO:0000256|SAAS:SAAS00795395};
Host-virus interaction {ECO:0000256|SAAS:SAAS00711583};
Hydrolase {ECO:0000256|SAAS:SAAS00124676,
ECO:0000256|SAAS:SAAS00503128};
Ion channel {ECO:0000256|SAAS:SAAS00711569};
Ion transport {ECO:0000256|SAAS:SAAS00711569};
Membrane {ECO:0000256|SAAS:SAAS00795395};
Nucleotide-binding {ECO:0000256|SAAS:SAAS00124676};
Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00711600};
Protease {ECO:0000256|SAAS:SAAS00503128};
RNA-binding {ECO:0000256|SAAS:SAAS00711776};
RNA-directed RNA polymerase {ECO:0000256|SAAS:SAAS00711600};
Thiol protease {ECO:0000256|SAAS:SAAS00503128};
Transferase {ECO:0000256|SAAS:SAAS00711600};
Transport {ECO:0000256|SAAS:SAAS00711569};
Viral attachment to host cell {ECO:0000256|SAAS:SAAS00711583};
Viral ion channel {ECO:0000256|SAAS:SAAS00711569};
Viral RNA replication {ECO:0000256|SAAS:SAAS00711682};
Virion {ECO:0000256|SAAS:SAAS00711583, ECO:0000256|SAAS:SAAS00803779};
Virus entry into host cell {ECO:0000256|SAAS:SAAS00711583}.
DOMAIN 641 797 SF3 helicase.
{ECO:0000259|PROSITE:PS51218}.
NON_TER 1 1 {ECO:0000313|EMBL:CCW33479.1}.
NON_TER 1370 1370 {ECO:0000313|EMBL:CCW33479.1}.
SEQUENCE 1370 AA; 153057 MW; C30A2DCC62833210 CRC64;
GDNQDKTVAD TQPSGPSNSK EIPALTAVET GHTSQVDPSD TIQTRHVVNF HSRSESTVEN
FMGRAACVFM DQYKLNGEET STDNFAVWTI NIREMAQLRR KCEMFTYMRF DIEMTMVITS
CQDQGTQLEQ DMPVLTHQIM YVPPGGPIPA KVDSYEWQTS TNPSVFWTEG NAPARMSIPF
ISVGNAYSLF YDGWSHFTQD GIYGYTTLNA MGKLYIRHVN KSSPHQITST IRVYFKPKHI
KAWVPRPPRL CPYINKGDVN FTVTEVTDAR KSITETPHPE HSVLATHGAF GQQSGAVYVG
NYRVVNRHLA THNDWQNCVW EDYNRDLLVS TTTAHGCDTI ARCQCTTGVY FCASKNKHYP
VTFEGPGLVE VQESEYYPKK YQSHVLLAAG FSEPGDCGGI LRCEHGVIGI VTMGGEGVVG
FADVRDLLWL EDDAMEQGVK DYVEQLGNAF GSGFTNQICE QVNLLKETLI GQDSILEKSL
KALVKIISAL VIVVRNHDDL ITVTATLALI GCTSSPWRWL KQRVSQYYGI PMAERQNSGW
LKKFTEMTNA CKGMEWIAIK IQKFIEWLKI KILPEVKEKH EFLNRLKQLP LLESQIATIE
QSAPSQSDQE QLFSNVQYFA HYCRKYAPLY AAEAKRVFSL EKKMSNYIQF KSKCRIEPVC
LLLHGSPGAG KSVATNLIGR SLAEKLNSSV YSLPPDPDHF DGYKQQAVVI MDDLCQNPDG
KDVSLFCQMV SSVDFVPPMA ALEEKGILFT SPFVLASTNA GSINAPTVSD SRALARRFHF
DMNIEVISMY SQNGKINMPM SVKACDEECC PVNFKKCCPL VCGKAIQFID RRTQVRYSLD
MLVTEMFREY NHRHSVGATL EALFQGPPMY REIKISVAPE TPPPPAIADL LKSVDSEAVR
EYCREKGWLV PEANSTLQIE KHVSRAFICL QALTTFVSVA GIIYIIYKLF AGFQGAYTGM
PNQKPKVPTL RQAKVQGPVF EFAVAMMKRN SSTVKTEYGE FTMLGIYDRW AVLPRHAKPG
PTVLMNDQEV GVLDAKELVD KDGTNLELTL LKLNRNEKFR DIRGFLAKEE VEVSEAVLAI
NTNKFPNMYI PVGQVTDYGF LNLGGTPTKR MLMYNFPTRA GQCGGVLMST GKVLGIHVGG
NGHQGFSAAL LRHYFNEEQG EIEFIESSKD AGFPVINTPN KTKLEPSVFH QVFEGNKEPA
VLRNGDPRLK VNFEEAIFSK YIGNVNTHVD EYMQEAVDHY AGQLATLDIS TEPMKLEDAV
YGTEGLEALD LTTSAGYPYV ALGIKKRDIL SKKTKDLTKL KECMDKYGLN LPMVTYVKDE
LRSAEKVAKG KSRLIEASSL NDSVAMRQTF GNLYKTFHLN PGIVTGSAVG


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