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Genome polyprotein [Cleaved into: P3; Protein 3AB; P2; P1; Capsid protein VP0 (VP4-VP2); Capsid protein VP4 (P1A) (Virion protein 4); Capsid protein VP2 (P1B) (Virion protein 2); Capsid protein VP3 (P1C) (Virion protein 3); Capsid protein VP1 (P1D) (Virion protein 1); Protease 2A (P2A) (EC 3.4.22.29) (Picornain 2A) (Protein 2A); Protein 2B (P2B); Protein 2C (P2C) (EC 3.6.1.15); Protein 3A (P3A); Viral protein genome-linked (VPg) (Protein 3B) (P3B); Protein 3CD (EC 3.4.22.28); Protease 3C (P3C) (EC 3.4.22.28); RNA-directed RNA polymerase (RdRp) (EC 2.7.7.48) (3D polymerase) (3Dpol) (Protein 3D) (3D)]

 POLG_EC09B              Reviewed;        2203 AA.
Q66577;
15-JUL-1999, integrated into UniProtKB/Swiss-Prot.
23-JAN-2007, sequence version 3.
20-JUN-2018, entry version 148.
RecName: Full=Genome polyprotein;
Contains:
RecName: Full=P3;
Contains:
RecName: Full=Protein 3AB;
Contains:
RecName: Full=P2;
Contains:
RecName: Full=P1;
Contains:
RecName: Full=Capsid protein VP0;
AltName: Full=VP4-VP2;
Contains:
RecName: Full=Capsid protein VP4;
AltName: Full=P1A;
AltName: Full=Virion protein 4;
Contains:
RecName: Full=Capsid protein VP2;
AltName: Full=P1B;
AltName: Full=Virion protein 2;
Contains:
RecName: Full=Capsid protein VP3;
AltName: Full=P1C;
AltName: Full=Virion protein 3;
Contains:
RecName: Full=Capsid protein VP1;
AltName: Full=P1D;
AltName: Full=Virion protein 1;
Contains:
RecName: Full=Protease 2A;
Short=P2A;
EC=3.4.22.29;
AltName: Full=Picornain 2A;
AltName: Full=Protein 2A;
Contains:
RecName: Full=Protein 2B;
Short=P2B;
Contains:
RecName: Full=Protein 2C;
Short=P2C;
EC=3.6.1.15;
Contains:
RecName: Full=Protein 3A;
Short=P3A;
Contains:
RecName: Full=Viral protein genome-linked;
Short=VPg;
AltName: Full=Protein 3B;
Short=P3B;
Contains:
RecName: Full=Protein 3CD;
EC=3.4.22.28;
Contains:
RecName: Full=Protease 3C;
Short=P3C;
EC=3.4.22.28;
Contains:
RecName: Full=RNA-directed RNA polymerase;
Short=RdRp;
EC=2.7.7.48;
AltName: Full=3D polymerase;
Short=3Dpol;
AltName: Full=Protein 3D;
Short=3D;
Echovirus 9 (strain Barty).
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Picornavirales; Picornaviridae; Enterovirus; Enterovirus B.
NCBI_TaxID=103914;
NCBI_TaxID=9606; Homo sapiens (Human).
[1]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
PubMed=8879131; DOI=10.1007/BF00572953;
Zimmermann H., Eggers H.J., Nelsen-Salz B.;
"Molecular cloning and sequence determination of the complete genome
of the virulent echovirus 9 strain Barty.";
Virus Genes 12:149-154(1996).
-!- FUNCTION: Capsid protein VP1: Forms an icosahedral capsid of
pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid
is 300 Angstroms in diameter, composed of 60 copies of each capsid
protein and enclosing the viral positive strand RNA genome. Capsid
protein VP1 mainly forms the vertices of the capsid. Capsid
protein VP1 interacts with host cell receptor to provide virion
attachment to target host cells. This attachment induces virion
internalization. Tyrosine kinases are probably involved in the
entry process. After binding to its receptor, the capsid undergoes
conformational changes. Capsid protein VP1 N-terminus (that
contains an amphipathic alpha-helix) and capsid protein VP4 are
externalized. Together, they shape a pore in the host membrane
through which viral genome is translocated to host cell cytoplasm.
After genome has been released, the channel shrinks (By
similarity). {ECO:0000250}.
-!- FUNCTION: Capsid protein VP2: Forms an icosahedral capsid of
pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid
is 300 Angstroms in diameter, composed of 60 copies of each capsid
protein and enclosing the viral positive strand RNA genome (By
similarity). {ECO:0000250}.
-!- FUNCTION: Capsid protein VP3: Forms an icosahedral capsid of
pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid
is 300 Angstroms in diameter, composed of 60 copies of each capsid
protein and enclosing the viral positive strand RNA genome (By
similarity). {ECO:0000250}.
-!- FUNCTION: Capsid protein VP4: Lies on the inner surface of the
capsid shell. After binding to the host receptor, the capsid
undergoes conformational changes. Capsid protein VP4 is released,
Capsid protein VP1 N-terminus is externalized, and together, they
shape a pore in the host membrane through which the viral genome
is translocated into the host cell cytoplasm. After genome has
been released, the channel shrinks (By similarity). {ECO:0000250}.
-!- FUNCTION: Capsid protein VP0: Component of immature procapsids,
which is cleaved into capsid proteins VP4 and VP2 after
maturation. Allows the capsid to remain inactive before the
maturation step (By similarity). {ECO:0000250}.
-!- FUNCTION: Protein 2A: Cysteine protease that cleaves viral
polyprotein and specific host proteins. It is responsible for the
cleavage between the P1 and P2 regions, first cleavage occurring
in the polyprotein. Cleaves also the host translation initiation
factor EIF4G1, in order to shut down the capped cellular mRNA
translation. Inhibits the host nucleus-cytoplasm protein and RNA
trafficking by cleaving host members of the nuclear pores (By
similarity). {ECO:0000250}.
-!- FUNCTION: Protein 2B: Plays an essential role in the virus
replication cycle by acting as a viroporin. Creates a pore in the
host reticulum endoplasmic and as a consequence releases Ca2+ in
the cytoplasm of infected cell. In turn, high levels of
cytoplasmic calcium may trigger membrane trafficking and transport
of viral ER-associated proteins to viroplasms, sites of viral
genome replication (By similarity). {ECO:0000250}.
-!- FUNCTION: Protein 2C: Induces and associates with structural
rearrangements of intracellular membranes. Displays RNA-binding,
nucleotide binding and NTPase activities. May play a role in
virion morphogenesis and viral RNA encapsidation by interacting
with the capsid protein VP3 (By similarity). {ECO:0000250}.
-!- FUNCTION: Protein 3AB: Localizes the viral replication complex to
the surface of membranous vesicles. Together with protein 3CD
binds the Cis-Active RNA Element (CRE) which is involved in RNA
synthesis initiation. Acts as a cofactor to stimulate the activity
of 3D polymerase, maybe through a nucleid acid chaperone activity
(By similarity). {ECO:0000250}.
-!- FUNCTION: Protein 3A: Localizes the viral replication complex to
the surface of membranous vesicles. It inhibits host cell
endoplasmic reticulum-to-Golgi apparatus transport and causes the
dissassembly of the Golgi complex, possibly through GBF1
interaction. This would result in depletion of MHC, trail
receptors and IFN receptors at the host cell surface (By
similarity). {ECO:0000250}.
-!- FUNCTION: Viral protein genome-linked: acts as a primer for viral
RNA replication and remains covalently bound to viral genomic RNA.
VPg is uridylylated prior to priming replication into VPg-pUpU.
The oriI viral genomic sequence may act as a template for this.
The VPg-pUpU is then used as primer on the genomic RNA poly(A) by
the RNA-dependent RNA polymerase to replicate the viral genome.
VPg may be removed in the cytoplasm by an unknown enzyme termed
"unlinkase". VPg is not cleaved off virion genomes because
replicated genomic RNA are encapsidated at the site of replication
(By similarity). {ECO:0000250}.
-!- FUNCTION: Protein 3CD: Is involved in the viral replication
complex and viral polypeptide maturation. It exhibits protease
activity with a specificity and catalytic efficiency that is
different from protease 3C. Protein 3CD lacks polymerase activity.
The 3C domain in the context of protein 3CD may have an RNA
binding activity (By similarity). {ECO:0000250}.
-!- FUNCTION: Protease 3C: cleaves host DDX58/RIG-I and thus
contributes to the inhibition of type I interferon production.
Cleaves also host PABPC1 (By similarity). {ECO:0000250}.
-!- FUNCTION: RNA-directed RNA polymerase: Replicates the viral
genomic RNA on the surface of intracellular membranes. May form
linear arrays of subunits that propagate along a strong head-to-
tail interaction called interface-I. Covalently attaches UMP to a
tyrosine of VPg, which is used to prime RNA synthesis. The
positive stranded RNA genome is first replicated at virus induced
membranous vesicles, creating a dsRNA genomic replication form.
This dsRNA is then used as template to synthesize positive
stranded RNA genomes. ss(+)RNA genomes are either translated,
replicated or encapsidated (By similarity). {ECO:0000255|PROSITE-
ProRule:PRU00539}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000255|PROSITE-ProRule:PRU00539}.
-!- CATALYTIC ACTIVITY: Selective cleavage of Tyr-|-Gly bond in the
picornavirus polyprotein.
-!- CATALYTIC ACTIVITY: Selective cleavage of Gln-|-Gly bond in the
poliovirus polyprotein. In other picornavirus reactions Glu may be
substituted for Gln, and Ser or Thr for Gly.
-!- CATALYTIC ACTIVITY: NTP + H(2)O = NDP + phosphate.
-!- ENZYME REGULATION: RNA-directed RNA polymerase: replication or
transcription is subject to high level of random mutations by the
nucleotide analog ribavirin.
-!- SUBUNIT: Capsid protein VP1: Interacts with capsid protein VP0,
and capsid protein VP3 to form heterotrimeric protomers. Five
protomers subsequently associate to form pentamers which serve as
building blocks for the capsid. Interacts with capsid protein VP4
in the mature capsid (By similarity). Capsid protein VP0:
interacts with capsid protein VP1 and capsid protein VP3 to form
heterotrimeric protomers. Five protomers subsequently associate to
form pentamers which serve as building blocks for the capsid.
Capsid protein VP2: Interacts with capsid protein VP1 and capsid
protein VP3 in the mature capsid (By similarity). Capsid protein
VP3: interacts with capsid protein VP0 and capsid protein VP1 to
form heterotrimeric protomers. Five protomers subsequently
associate to form pentamers which serve as building blocks for the
capsid. Interacts with capsid protein VP4 in the mature capsid (By
similarity). Capsid protein VP4: Interacts with capsid protein VP1
and capsid protein VP3 (By similarity). Protein 2C: interacts with
capsid protein VP3; this interaction may be important for virion
morphogenesis (By similarity). Protein 3AB: interacts with protein
3CD (By similarity). Viral protein genome-linked: interacts with
RNA-directed RNA polymerase (By similarity). Protein 3CD:
interacts with protein 3AB and with RNA-directed RNA polymerase.
RNA-directed RNA polymerase: interacts with viral protein genome-
linked and with protein 3CD (By similarity). {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Capsid protein VP0: Virion {ECO:0000250}.
Host cytoplasm {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Capsid protein VP4: Virion {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Capsid protein VP2: Virion {ECO:0000250}.
Host cytoplasm {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Capsid protein VP3: Virion {ECO:0000250}.
Host cytoplasm {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Capsid protein VP1: Virion {ECO:0000250}.
Host cytoplasm {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Protein 2B: Host cytoplasmic vesicle
membrane {ECO:0000305}; Peripheral membrane protein {ECO:0000305};
Cytoplasmic side {ECO:0000305}. Note=Probably localizes to the
surface of intracellular membrane vesicles that are induced after
virus infection as the site for viral RNA replication. These
vesicles are derived from the endoplasmic reticulum.
-!- SUBCELLULAR LOCATION: Protein 2C: Host cytoplasmic vesicle
membrane {ECO:0000305}; Peripheral membrane protein {ECO:0000305};
Cytoplasmic side {ECO:0000305}. Note=Probably localizes to the
surface of intracellular membrane vesicles that are induced after
virus infection as the site for viral RNA replication. These
vesicles are derived from the endoplasmic reticulum.
-!- SUBCELLULAR LOCATION: Protein 3A: Host cytoplasmic vesicle
membrane {ECO:0000305}; Peripheral membrane protein {ECO:0000305};
Cytoplasmic side {ECO:0000305}. Note=Probably localizes to the
surface of intracellular membrane vesicles that are induced after
virus infection as the site for viral RNA replication. These
vesicles are derived from the endoplasmic reticulum.
-!- SUBCELLULAR LOCATION: Protein 3AB: Host cytoplasmic vesicle
membrane {ECO:0000305}; Peripheral membrane protein {ECO:0000305};
Cytoplasmic side {ECO:0000305}. Note=Probably localizes to the
surface of intracellular membrane vesicles that are induced after
virus infection as the site for viral RNA replication. These
vesicles are derived from the endoplasmic reticulum.
-!- SUBCELLULAR LOCATION: Viral protein genome-linked: Virion
{ECO:0000250}. Host cytoplasm {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Protease 3C: Host cytoplasm {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Protein 3CD: Host cytoplasmic vesicle
membrane {ECO:0000305}; Peripheral membrane protein {ECO:0000305};
Cytoplasmic side {ECO:0000305}. Note=Probably localizes to the
surface of intracellular membrane vesicles that are induced after
virus infection as the site for viral RNA replication. These
vesicles are derived from the endoplasmic reticulum.
-!- SUBCELLULAR LOCATION: RNA-directed RNA polymerase: Host
cytoplasmic vesicle membrane {ECO:0000305}; Peripheral membrane
protein {ECO:0000305}; Cytoplasmic side {ECO:0000305}.
Note=Probably localizes to the surface of intracellular membrane
vesicles that are induced after virus infection as the site for
viral RNA replication. These vesicles are derived from the
endoplasmic reticulum.
-!- PTM: Specific enzymatic cleavages in vivo by the viral proteases
yield a variety of precursors and mature proteins. Polyprotein
processing intermediates such as VP0 which is a VP4-VP2 precursor
are produced. During virion maturation, non-infectious particles
are rendered infectious following cleavage of VP0. This maturation
cleavage is followed by a conformational change of the particle
(By similarity). {ECO:0000250}.
-!- PTM: VPg is uridylylated by the polymerase and is covalently
linked to the 5'-end of genomic RNA. This uridylylated form acts
as a nucleotide-peptide primer for the polymerase (By similarity).
{ECO:0000250}.
-!- PTM: Myristoylation of VP4 is required during RNA encapsidation
and formation of the mature virus particle. {ECO:0000250}.
-!- PTM: Capsid protein VP0: Myristoylation is required for the
formation of pentamers during virus assembly. Further assembly of
12 pentamers and a molecule of genomic RNA generates the provirion
(By similarity). {ECO:0000250}.
-!- PTM: Genome polyprotein: Specific enzymatic cleavages in vivo by
the viral proteases yield processing intermediates and the mature
proteins. {ECO:0000250}.
-!- PTM: Capsid protein VP0: During virion maturation, immature
virions are rendered infectious following cleavage of VP0 into VP4
and VP2. This maturation seems to be an autocatalytic event
triggered by the presence of RNA in the capsid and it is followed
by a conformational change infectious virion (By similarity).
{ECO:0000250}.
-!- PTM: Viral protein genome-linked: VPg is uridylylated by the
polymerase into VPg-pUpU. This acts as a nucleotide-peptide primer
for the genomic RNA replication (By similarity). {ECO:0000250}.
-!- SIMILARITY: Belongs to the picornaviruses polyprotein family.
{ECO:0000305}.
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EMBL; X92886; CAA63480.1; -; Genomic_RNA.
ProteinModelPortal; Q66577; -.
SMR; Q66577; -.
PRIDE; Q66577; -.
OrthoDB; VOG0900001E; -.
Proteomes; UP000008271; Genome.
GO; GO:0044162; C:host cell cytoplasmic vesicle membrane; IEA:UniProtKB-SubCell.
GO; GO:0044385; C:integral to membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
GO; GO:0039618; C:T=pseudo3 icosahedral viral capsid; IEA:UniProtKB-KW.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
GO; GO:0005216; F:ion channel activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
GO; GO:0075509; P:endocytosis involved in viral entry into host cell; IEA:UniProtKB-KW.
GO; GO:0039520; P:induction by virus of host autophagy; ISS:UniProtKB.
GO; GO:0039707; P:pore formation by virus in membrane of host cell; IEA:UniProtKB-KW.
GO; GO:0044694; P:pore-mediated entry of viral genome into host cell; IEA:UniProtKB-KW.
GO; GO:0039690; P:positive stranded viral RNA replication; ISS:UniProtKB.
GO; GO:0051259; P:protein complex oligomerization; IEA:UniProtKB-KW.
GO; GO:0018144; P:RNA-protein covalent cross-linking; IEA:UniProtKB-KW.
GO; GO:0039657; P:suppression by virus of host gene expression; IEA:UniProtKB-KW.
GO; GO:0039522; P:suppression by virus of host mRNA export from nucleus; ISS:UniProtKB.
GO; GO:0039540; P:suppression by virus of host RIG-I activity; IEA:UniProtKB-KW.
GO; GO:0039611; P:suppression by virus of host translation initiation factor activity; ISS:UniProtKB.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
CDD; cd00205; rhv_like; 3.
Gene3D; 1.10.10.870; -; 1.
Gene3D; 2.60.120.20; -; 3.
Gene3D; 4.10.80.10; -; 1.
InterPro; IPR003593; AAA+_ATPase.
InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir.
InterPro; IPR014759; Helicase_SF3_ssRNA_vir.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR014838; P3A.
InterPro; IPR036203; P3A_soluble_dom.
InterPro; IPR000081; Peptidase_C3.
InterPro; IPR000199; Peptidase_C3A/C3B_picornavir.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR003138; Pico_P1A.
InterPro; IPR036988; Pico_P1A_sf.
InterPro; IPR002527; Pico_P2B.
InterPro; IPR001676; Picornavirus_capsid.
InterPro; IPR033703; Rhv-like.
InterPro; IPR001205; RNA-dir_pol_C.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
InterPro; IPR029053; Viral_coat.
Pfam; PF08727; P3A; 1.
Pfam; PF00548; Peptidase_C3; 1.
Pfam; PF02226; Pico_P1A; 1.
Pfam; PF00947; Pico_P2A; 1.
Pfam; PF01552; Pico_P2B; 1.
Pfam; PF00680; RdRP_1; 1.
Pfam; PF00073; Rhv; 3.
Pfam; PF00910; RNA_helicase; 1.
ProDom; PD001306; Peptidase_C3; 1.
ProDom; PD649346; Pico_P2B; 1.
SMART; SM00382; AAA; 1.
SUPFAM; SSF50494; SSF50494; 2.
SUPFAM; SSF52540; SSF52540; 1.
SUPFAM; SSF89043; SSF89043; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PROSITE; PS51218; SF3_HELICASE_2; 1.
3: Inferred from homology;
Activation of host autophagy by virus; ATP-binding; Capsid protein;
Complete proteome; Covalent protein-RNA linkage; DNA replication;
Eukaryotic host gene expression shutoff by virus;
Eukaryotic host translation shutoff by virus; Helicase;
Host cytoplasm; Host cytoplasmic vesicle;
Host gene expression shutoff by virus; Host membrane;
Host mRNA suppression by virus; Host-virus interaction; Hydrolase;
Inhibition of host innate immune response by virus;
Inhibition of host mRNA nuclear export by virus;
Inhibition of host RIG-I by virus;
Inhibition of host RLR pathway by virus; Ion channel; Ion transport;
Lipoprotein; Membrane; Myristate; Nucleotide-binding;
Nucleotidyltransferase; Phosphoprotein;
Pore-mediated penetration of viral genome into host cell; Protease;
Repeat; RNA-binding; RNA-directed RNA polymerase;
T=pseudo3 icosahedral capsid protein; Thiol protease; Transferase;
Transport; Viral attachment to host cell; Viral immunoevasion;
Viral ion channel; Viral penetration into host cytoplasm;
Viral RNA replication; Virion; Virus endocytosis by host;
Virus entry into host cell.
INIT_MET 1 1 Removed; by host. {ECO:0000250}.
CHAIN 2 2203 Genome polyprotein. {ECO:0000250}.
/FTId=PRO_0000426401.
CHAIN 2 850 P1. {ECO:0000250}.
/FTId=PRO_0000426402.
CHAIN 2 330 Capsid protein VP0. {ECO:0000255}.
/FTId=PRO_0000426403.
CHAIN 2 69 Capsid protein VP4. {ECO:0000255}.
/FTId=PRO_0000426404.
CHAIN 70 330 Capsid protein VP2. {ECO:0000255}.
/FTId=PRO_0000426405.
CHAIN 331 567 Capsid protein VP3. {ECO:0000255}.
/FTId=PRO_0000426406.
CHAIN 567 869 Capsid protein VP1. {ECO:0000255}.
/FTId=PRO_0000426407.
CHAIN 870 1447 P2. {ECO:0000250}.
/FTId=PRO_0000426408.
CHAIN 870 1019 Protease 2A. {ECO:0000255}.
/FTId=PRO_0000426409.
CHAIN 1020 1118 Protein 2B. {ECO:0000255}.
/FTId=PRO_0000039686.
CHAIN 1119 1447 Protein 2C. {ECO:0000255}.
/FTId=PRO_0000039687.
CHAIN 1448 2203 P3. {ECO:0000250}.
/FTId=PRO_0000426410.
CHAIN 1448 1558 Protein 3AB. {ECO:0000255}.
/FTId=PRO_0000426411.
CHAIN 1448 1536 Protein 3A. {ECO:0000255}.
/FTId=PRO_0000039688.
CHAIN 1537 1558 Viral protein genome-linked.
{ECO:0000255}.
/FTId=PRO_0000426412.
CHAIN 1559 2203 Protein 3CD. {ECO:0000255}.
/FTId=PRO_0000426413.
CHAIN 1559 1740 Protease 3C. {ECO:0000255}.
/FTId=PRO_0000426414.
CHAIN 1741 2203 RNA-directed RNA polymerase.
{ECO:0000250}.
/FTId=PRO_0000426415.
TOPO_DOM 2 1513 Cytoplasmic. {ECO:0000255}.
INTRAMEM 1514 1529 {ECO:0000255}.
TOPO_DOM 1530 2203 Cytoplasmic. {ECO:0000255}.
DOMAIN 1223 1379 SF3 helicase. {ECO:0000255|PROSITE-
ProRule:PRU00551}.
DOMAIN 1559 1724 Peptidase C3.
DOMAIN 1968 2084 RdRp catalytic. {ECO:0000255|PROSITE-
ProRule:PRU00539}.
REGION 567 583 Amphipatic alpha-helix. {ECO:0000255}.
REGION 1448 1471 Disordered. {ECO:0000250}.
ACT_SITE 890 890 For Protease 2A activity. {ECO:0000250}.
ACT_SITE 908 908 For Protease 2A activity. {ECO:0000250}.
ACT_SITE 979 979 For Protease 2A activity. {ECO:0000250}.
ACT_SITE 1598 1598 For Protease 3C activity. {ECO:0000255}.
ACT_SITE 1629 1629 For Protease 3C activity. {ECO:0000255}.
ACT_SITE 1705 1705 For Protease 3C activity. {ECO:0000250}.
ACT_SITE 2070 2070 For RdRp activity. {ECO:0000250}.
SITE 69 70 Cleavage; by autolysis. {ECO:0000255}.
SITE 330 331 Cleavage; by Protease 3C. {ECO:0000255}.
SITE 869 870 Cleavage; by Protease 2A. {ECO:0000255}.
SITE 1019 1020 Cleavage; by Protease 3C. {ECO:0000255}.
SITE 1447 1448 Cleavage; by Protease 3C. {ECO:0000255}.
SITE 1536 1537 Cleavage; by Protease 3C. {ECO:0000255}.
SITE 1558 1559 Cleavage; by Protease 3C. {ECO:0000255}.
SITE 1741 1742 Cleavage; by Protease 3C. {ECO:0000255}.
MOD_RES 1539 1539 O-(5'-phospho-RNA)-tyrosine.
{ECO:0000250}.
LIPID 2 2 N-myristoyl glycine; by host.
{ECO:0000250}.
SEQUENCE 2203 AA; 246281 MW; 79B78F8C99D02777 CRC64;
MGAQVSTQKT GAHETGLNAS GNSIIHYTNI NYYKDSASNS ANRQDFTQDP SKFTEPVKDV
MIKTLPALNS PSAEECGFSD RVRSITIGNS TITTQECANV VVAYGRWPAY LRDDEATAED
QPTQPDVATC RFYTLESVQW QENSAGWWWK FPDALSNMGL FGQNMLYHYL GRSGYTIHVQ
CNASKFHQGR PIVVCVPEAE MGCSKVDGVV NAQGLSKGET PIEFERTSTT AEVGVVQKAV
YNAGMGVGVG NLTIFPHQWI NLRRNNSATI VIPYINCVPM DNMFRHNNFT LMVILFAPLK
SSGGTNYVSI TITVAPMDAE YNGLRLAGHQ GLPTMNTPGS TQFLTSDDFQ SPCAMPEFDV
TPCMDIPGEV HNLMEIAEVD SVVPVNNTST HMEGTDAFQI KVTAGNVQDK SAIFSFQLNP
GNSTVLRRTL LGEILNYYAH WSGSIKLTFL FCGSAMATGK LLLAYSHAGA SVPKSRRDAM
LGTHVIWDVG LQSSCVLCVP WISQTHYRLV AQDEYTSAGY ITCWYQTNIV VPPETPSDCV
VLCFVSACND FSVRMLKDTP FIEQAAELQN DVRQAVEGAI GRVADTIRSG PSNSEAVPAL
TAAETGHTSQ VVPSDTMQTR HVKNYHSRSE STIENFLCRS ACVRMAKYEA RGDPESTDRF
DAWEISVRDM VQMRRKCEMF TYLRFDVEVT FVITSYQHQG SINQDMPPMT HQIMYIPPGG
PFPKKVDGYE WQTSTNPSIF WTEGNAPPRM SIPFISIGNA YSSFYDGWSH FDSKGAYGFN
TLNKMGHIYC RHVNKETPAE VTSYIRIYFK PKHIRAWVPR PPRLCQYKNK ANVNFEATAF
TETRDTINTV PVSNHGSGRR GDLAALSTHG AFGQESGAVY VGNYRVLNRH LATHTDWQNC
IWEDYNRDLL VSTTTAHGCD TIARCQCKTG VFFCQSKNKH YPVSFEGPGL VEVQESEYYP
KRYQSHVLLA AGFSEPGDCG GILRCDHGVI GLVTMGGEGV VGFADVRDLL WLEDDAMEQG
VKDYVEQLGN AFGSGFTNQI CEQVNLLKES LIGQDSVLEK SLKALVKIIS ALVIVVRNQD
DLITVTATLA LIGCTTSPWR WLKQKVSQYY GIPMAERQSN GWLKKFTEMT NACKGMEWIA
VKIQKFIEWL KVKNLPEVKE KHEFLNRLKQ LPLLESQIAT IEQSAPSQSD QEQLFSNVQY
FAHYCRKYAP LYAAEAKRVF SLEKKMSNYI QFKSKCRIEP VCLLLHGSPG AGKSVATNLI
GRSLAEKLNS SVYSLPPDPD HFDGYKQQAV VIMDDLCQNP DGKDVSLFCQ MVSSVDFVPP
MAALEEKGIL FTSPFVLAST NAGSINAPTV SDSRALARRF HFDMNIEVIS MYSQNGKINM
PMSVKTCDEE CCPVNFKRCC PLVCGKAIQF IDRRTQVRYS LDMLVTEMFR EYNHRHSVGA
TLEALFQGPP VYREIKISVA PETPPPPAIA DLLKSVDSEA VREYCKERGW LVPEINSTLQ
IEKHVSRAFI CLQALTTFVS VAGIIYIIYK LFAGFQGAYT GMPNKKPKVP TLRQAKVQGP
AFEFAVAMMK RNASTVKTEY GEFTMLGIYD RWAVLPRHAK PGSTILMNDQ EVCLLDAKEL
VDKDGINLEL TLLKLNRNEK FRDIRGFLAR EEVEVNEAVL AINTSKFPNM YIPVGQVTDY
GFLNLGGTPT KRMLMYNFPT RAGQCGGVLM STGKVLGIHV GGNGHQGFSA ALLRHYFNEE
QGEIEFIESS KDAGFPVINT PSKTKLEPSV FHQVFEGNKE PAVLRNGDPR LKADFEEAIF
SKYIGNVNTH VDEYMQEAVD HYAGQLATLD ISTEPMKLED AVYGTEGLEA LDLTTSAGYP
YVALGIKKRD ILSKRTKDLT KLKECMDKYG LNLPMVTYVK DELRSAEKSP RGKSRLIEAS
SLNDSVAMRQ TFGNLYKVFH LNPGIVTGSA VGCDPDVFWS KIPVMLDGHL IAFDYSGYDA
SLSPVWFACL KLLLEKLGYS SKETNYIDYL CNSHHLYRDK HYFVRGGMPS GCSGTSIFNS
MINNIIIRTL MLKVYKGIDL DQFRMIAYGD DVIASYPWPI DASLLAEAGK DYGLIMTPAD
KGECFNEVTW TNVTFLKRYF RADEQYPFLV HPVMPMKDIH ESIRWTKDPK NTQDHVRSLC
LLAWHNGEHE YEEFIHKIRS VPVGRCLTLP AFSTLRRKWL DSF


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