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Glutamate receptor IIC

 Q9VPV3_DROME            Unreviewed;       940 AA.
Q9VPV3;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
26-JUN-2013, sequence version 4.
31-JAN-2018, entry version 133.
SubName: Full=Glutamate receptor IIC {ECO:0000313|EMBL:AAF51433.4};
Name=GluRIIC {ECO:0000313|EMBL:AAF51433.4,
ECO:0000313|FlyBase:FBgn0046113};
Synonyms=CT13021 {ECO:0000313|EMBL:AAF51433.4},
DGluR-IIC {ECO:0000313|EMBL:AAF51433.4},
DGluRIIC {ECO:0000313|EMBL:AAF51433.4},
DGluRIII {ECO:0000313|EMBL:AAF51433.4},
Dmel\CG4226 {ECO:0000313|EMBL:AAF51433.4},
DmelGluRIIC {ECO:0000313|EMBL:AAF51433.4},
GluR {ECO:0000313|EMBL:AAF51433.4},
GluR3 {ECO:0000313|EMBL:AAF51433.4},
GluRC {ECO:0000313|EMBL:AAF51433.4},
GluRII-C {ECO:0000313|EMBL:AAF51433.4},
GLURIIC {ECO:0000313|EMBL:AAF51433.4},
GluRIII {ECO:0000313|EMBL:AAF51433.4},
glutamate receptor III {ECO:0000313|EMBL:AAF51433.4},
GlutRIII {ECO:0000313|EMBL:AAF51433.4},
III {ECO:0000313|EMBL:AAF51433.4};
ORFNames=CG4226 {ECO:0000313|EMBL:AAF51433.4,
ECO:0000313|FlyBase:FBgn0046113},
Dmel_CG4226 {ECO:0000313|EMBL:AAF51433.4};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF51433.4, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF51433.4, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF51433.4, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF51433.4, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF51433.4, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AAF51433.4, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAF51433.4, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AAF51433.4, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:AAF51433.4, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
-!- SUBCELLULAR LOCATION: Cell junction, synapse, postsynaptic cell
membrane {ECO:0000256|SAAS:SAAS00582638}.
-!- SIMILARITY: Belongs to the glutamate-gated ion channel (TC
1.A.10.1) family. {ECO:0000256|SAAS:SAAS00586618}.
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EMBL; AE014134; AAF51433.4; -; Genomic_DNA.
RefSeq; NP_608557.4; NM_134713.4.
UniGene; Dm.2236; -.
ProteinModelPortal; Q9VPV3; -.
SMR; Q9VPV3; -.
IntAct; Q9VPV3; 2.
STRING; 7227.FBpp0271752; -.
PaxDb; Q9VPV3; -.
PRIDE; Q9VPV3; -.
EnsemblMetazoa; FBtr0336969; FBpp0307912; FBgn0046113.
GeneID; 33275; -.
KEGG; dme:Dmel_CG4226; -.
CTD; 33275; -.
FlyBase; FBgn0046113; GluRIIC.
eggNOG; ENOG410ISR6; Eukaryota.
eggNOG; ENOG410ZHS8; LUCA.
GeneTree; ENSGT00760000118920; -.
InParanoid; Q9VPV3; -.
KO; K05313; -.
OMA; MFLMETT; -.
OrthoDB; EOG091G013S; -.
Reactome; R-DME-451307; Activation of Na-permeable kainate receptors.
Reactome; R-DME-451308; Activation of Ca-permeable Kainate Receptor.
Reactome; R-DME-500657; Presynaptic function of Kainate receptors.
GenomeRNAi; 33275; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0046113; -.
ExpressionAtlas; Q9VPV3; differential.
Genevisible; Q9VPV3; DM.
GO; GO:0030054; C:cell junction; IEA:UniProtKB-KW.
GO; GO:0005622; C:intracellular; IEA:GOC.
GO; GO:0008328; C:ionotropic glutamate receptor complex; IMP:FlyBase.
GO; GO:0097482; C:muscle cell postsynaptic specialization; IDA:FlyBase.
GO; GO:0031594; C:neuromuscular junction; IDA:FlyBase.
GO; GO:0045211; C:postsynaptic membrane; IEA:UniProtKB-SubCell.
GO; GO:0045202; C:synapse; IDA:FlyBase.
GO; GO:0005234; F:extracellularly glutamate-gated ion channel activity; IEA:InterPro.
GO; GO:0008066; F:glutamate receptor activity; NAS:FlyBase.
GO; GO:0022849; F:glutamate-gated calcium ion channel activity; IDA:FlyBase.
GO; GO:0004970; F:ionotropic glutamate receptor activity; IC:FlyBase.
GO; GO:0015277; F:kainate selective glutamate receptor activity; ISS:FlyBase.
GO; GO:0006816; P:calcium ion transport; IDA:FlyBase.
GO; GO:0007268; P:chemical synaptic transmission; IMP:FlyBase.
GO; GO:0045184; P:establishment of protein localization; IMP:FlyBase.
GO; GO:0007274; P:neuromuscular synaptic transmission; IEP:FlyBase.
GO; GO:0030510; P:regulation of BMP signaling pathway; IMP:FlyBase.
GO; GO:0035249; P:synaptic transmission, glutamatergic; IC:FlyBase.
InterPro; IPR001828; ANF_lig-bd_rcpt.
InterPro; IPR019594; Glu/Gly-bd.
InterPro; IPR001508; Iono_rcpt_met.
InterPro; IPR001320; Iontro_rcpt.
InterPro; IPR028082; Peripla_BP_I.
Pfam; PF01094; ANF_receptor; 1.
Pfam; PF00060; Lig_chan; 1.
Pfam; PF10613; Lig_chan-Glu_bd; 1.
PRINTS; PR00177; NMDARECEPTOR.
SMART; SM00918; Lig_chan-Glu_bd; 1.
SMART; SM00079; PBPe; 1.
SUPFAM; SSF53822; SSF53822; 1.
3: Inferred from homology;
Cell junction {ECO:0000256|SAAS:SAAS00111890};
Cell membrane {ECO:0000256|SAAS:SAAS00618203};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Ion channel {ECO:0000256|SAAS:SAAS00586652};
Ion transport {ECO:0000256|SAAS:SAAS00586652};
Ligand-gated ion channel {ECO:0000256|SAAS:SAAS00586652};
Membrane {ECO:0000256|SAAS:SAAS00111890,
ECO:0000256|SAAS:SAAS00425515, ECO:0000256|SAAS:SAAS00618203,
ECO:0000256|SAM:Phobius};
Postsynaptic cell membrane {ECO:0000256|SAAS:SAAS00111890};
Receptor {ECO:0000256|SAAS:SAAS00586650, ECO:0000313|EMBL:AAF51433.4};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Signal {ECO:0000256|SAM:SignalP};
Synapse {ECO:0000256|SAAS:SAAS00111890};
Transmembrane {ECO:0000256|SAAS:SAAS00425515,
ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAAS:SAAS00425515,
ECO:0000256|SAM:Phobius}; Transport {ECO:0000256|SAAS:SAAS00586652}.
SIGNAL 1 22 {ECO:0000256|SAM:SignalP}.
CHAIN 23 940 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5004338397.
TRANSMEM 555 573 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 630 651 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 820 843 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 422 795 PBPe. {ECO:0000259|SMART:SM00079}.
DOMAIN 432 499 Lig_chan-Glu_bd.
{ECO:0000259|SMART:SM00918}.
SEQUENCE 940 AA; 106756 MW; A174C3A30BB065C2 CRC64;
MWQRILLLGC MWSAFFMCRS RGQQINIGAF FYDDELELEK EFMTVVNAIN GPESEQTMRF
YPLIKRLKPE DGSVTMQEHA CDLIDNGVAA IFGPSSKAAS DIVALVCNST GIPHIEFDIS
DEGIQAEKPN HQMTLNLYPA QAILSKAYAD IVQNFGWRKF TIVYDADDAR AAARLQDLLQ
LREVHNDVVR VRKFHKDDDF RVMWKSIRGE RRVVLDCEPN MLVELLNSST EFGLTGQYNH
IFLTNLETYT DHLEELAADN ETFAVNITAA RLLVNPDPPP YSLPYGYVTQ RDNIVYESSD
PPRTLIHDLI HDALQLFAQS WRNASFFYPD RMVVPRITCD FAASGGRTWA MGRYLARLMK
GTSGVNNTNF RTSILQFDED GQRITFNIEV YDPLDGIGIA IWDPRGQITQ LNVDVKAQKK
MIYRVATRIG PPYFSYNETA RELNLTGNAL YQGYAVDLID AIARHVGFEY VFVPVADQQY
GKLDKETKQW NGIIGEIINN DAHMGICDLT ITQARKTAVD FTVPFMQLGV SILAYKSPHV
EKTLDAYLAP FGGEVWIWIL ISVFVMTFLK TIVARISKMD WENPHPCNRD PEVLENQWRI
HNTGWLTVAS IMTAGCDILP RSPQVRMFEA TWWIFAIIIA NSYTANLAAF LTSSKMEGSI
ANLKDLSAQK KVKFGTIYGG STYNLLADSN ETVYRLAFNL MNNDDPSAYT KDNLEGVDRV
RKNRGDYMFL METTTLEYHR EQNCDLRSVG EKFGEKHYAI AVPFGAEYRS NLSVAILKLS
ERGELYDLKQ KWWKNPNASC FEEPDPDATP DMTFEELRGI FYTLYAGILI AFLIGITEFL
VYVQQVALEE RLTFKDAFKK EIRFVLCVWN NRKPIVAGTP ISSVRTTPRR SLDKSLDRTP
KSSRRVVIGR SSEEMREMAQ GSGSSSGSNN AGRGEKEARV


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