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Golgin subfamily A member 5 (Cell proliferation-inducing gene 31 protein) (Golgin-84) (Protein Ret-II) (RET-fused gene 5 protein)

 GOGA5_HUMAN             Reviewed;         731 AA.
Q8TBA6; C9JRU1; O95287; Q03962; Q2TS49; Q9UQQ7;
03-JUL-2003, integrated into UniProtKB/Swiss-Prot.
18-MAY-2010, sequence version 3.
27-SEP-2017, entry version 138.
RecName: Full=Golgin subfamily A member 5;
AltName: Full=Cell proliferation-inducing gene 31 protein;
AltName: Full=Golgin-84;
AltName: Full=Protein Ret-II;
AltName: Full=RET-fused gene 5 protein;
Name=GOLGA5; Synonyms=RETII, RFG5; ORFNames=PIG31;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), SUBCELLULAR LOCATION,
TOPOLOGY, DIMERIZATION, INTERACTION WITH OCRL1, AND TISSUE
SPECIFICITY.
TISSUE=Testis;
PubMed=9915833; DOI=10.1074/jbc.274.5.2953;
Bascom R.A., Srinivasan S., Nussbaum R.L.;
"Identification and characterization of golgin-84, a novel Golgi
integral membrane protein with a cytoplasmic coiled-coil domain.";
J. Biol. Chem. 274:2953-2962(1999).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Kim J.W.;
"Identification of a human cell proliferation gene.";
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=12508121; DOI=10.1038/nature01348;
Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C.,
Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A.,
Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S.,
Sun H., Du H., Pepin K., Artiguenave F., Robert C., Cruaud C.,
Bruels T., Jaillon O., Friedlander L., Samson G., Brottier P.,
Cure S., Segurens B., Aniere F., Samain S., Crespeau H., Abbasi N.,
Aiach N., Boscus D., Dickhoff R., Dors M., Dubois I., Friedman C.,
Gouyvenoux M., James R., Madan A., Mairey-Estrada B., Mangenot S.,
Martins N., Menard M., Oztas S., Ratcliffe A., Shaffer T., Trask B.,
Vacherie B., Bellemere C., Belser C., Besnard-Gonnet M.,
Bartol-Mavel D., Boutard M., Briez-Silla S., Combette S.,
Dufosse-Laurent V., Ferron C., Lechaplais C., Louesse C., Muselet D.,
Magdelenat G., Pateau E., Petit E., Sirvain-Trukniewicz P., Trybou A.,
Vega-Czarny N., Bataille E., Bluet E., Bordelais I., Dubois M.,
Dumont C., Guerin T., Haffray S., Hammadi R., Muanga J., Pellouin V.,
Robert D., Wunderle E., Gauguet G., Roy A., Sainte-Marthe L.,
Verdier J., Verdier-Discala C., Hillier L.W., Fulton L., McPherson J.,
Matsuda F., Wilson R., Scarpelli C., Gyapay G., Wincker P., Saurin W.,
Quetier F., Waterston R., Hood L., Weissenbach J.;
"The DNA sequence and analysis of human chromosome 14.";
Nature 421:601-607(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), AND VARIANT
GLY-67.
TISSUE=Placenta;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
NUCLEOTIDE SEQUENCE [MRNA] OF 1-497 (ISOFORM 1), AND CHROMOSOMAL
TRANSLOCATION WITH RET.
TISSUE=Fibroblast;
PubMed=2734021;
Ishizaka Y., Ochiai M., Tahira T., Suhimura T., Nahao M.;
"Activation of the ret-II oncogene without a sequence encoding a
transmembrane domain and transforming activity of two ret-II oncogene
products differing in carboxy-termini due to alternative splicing.";
Oncogene 4:789-794(1989).
[7]
ERRATUM.
Ishizaka Y., Ochiai M., Tahira T., Suhimura T., Nahao M.;
Oncogene 4:1415-1415(1989).
[8]
NUCLEOTIDE SEQUENCE [MRNA] OF 1-585, AND CHROMOSOMAL TRANSLOCATION
WITH RET.
TISSUE=Thyroid;
PubMed=9443391;
Klugbauer S., Demidchik E.P., Lengfelder E., Rabes H.M.;
"Detection of a novel type of Ret rearrangement (PTC5) in thyroid
carcinomas after Chernobyl and analysis of the involved Ret-fused gene
RFG5.";
Cancer Res. 58:198-203(1998).
[9]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 576-731 (ISOFORM 2).
TISSUE=Neuroblastoma;
Li W.B., Gruber C., Jessee J., Polayes D.;
"Full-length cDNA libraries and normalization.";
Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases.
[10]
FUNCTION, PHOSPHORYLATION, AND INTERACTION WITH RAB1A.
PubMed=12538640; DOI=10.1083/jcb.200207045;
Diao A., Rahman D., Pappin D.J.C., Lucocq J., Lowe M.;
"The coiled-coil membrane protein golgin-84 is a novel rab effector
required for Golgi ribbon formation.";
J. Cell Biol. 160:201-212(2003).
[11]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Leukemic T-cell;
PubMed=15144186; DOI=10.1021/ac035352d;
Brill L.M., Salomon A.R., Ficarro S.B., Mukherji M., Stettler-Gill M.,
Peters E.C.;
"Robust phosphoproteomic profiling of tyrosine phosphorylation sites
from human T cells using immobilized metal affinity chromatography and
tandem mass spectrometry.";
Anal. Chem. 76:2763-2772(2004).
[12]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=15592455; DOI=10.1038/nbt1046;
Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H.,
Zha X.-M., Polakiewicz R.D., Comb M.J.;
"Immunoaffinity profiling of tyrosine phosphorylation in cancer
cells.";
Nat. Biotechnol. 23:94-101(2005).
[13]
FUNCTION, AND INTERACTION WITH CUX1.
PubMed=15718469; DOI=10.1126/science.1108061;
Malsam J., Satoh A., Pelletier L., Warren G.;
"Golgin tethers define subpopulations of COPI vesicles.";
Science 307:1095-1098(2005).
[14]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-116, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=17081983; DOI=10.1016/j.cell.2006.09.026;
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,
Mann M.;
"Global, in vivo, and site-specific phosphorylation dynamics in
signaling networks.";
Cell 127:635-648(2006).
[15]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-116, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=18669648; DOI=10.1073/pnas.0805139105;
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,
Elledge S.J., Gygi S.P.;
"A quantitative atlas of mitotic phosphorylation.";
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
[16]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21269460; DOI=10.1186/1752-0509-5-17;
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P.,
Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.;
"Initial characterization of the human central proteome.";
BMC Syst. Biol. 5:17-17(2011).
[17]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-116, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21406692; DOI=10.1126/scisignal.2001570;
Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J.,
Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V.,
Blagoev B.;
"System-wide temporal characterization of the proteome and
phosphoproteome of human embryonic stem cell differentiation.";
Sci. Signal. 4:RS3-RS3(2011).
[18]
ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, CLEAVAGE OF INITIATOR
METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS
SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22223895; DOI=10.1074/mcp.M111.015131;
Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C.,
Meinnel T., Giglione C.;
"Comparative large-scale characterisation of plant vs. mammal proteins
reveals similar and idiosyncratic N-alpha acetylation features.";
Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
[19]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-116, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Liver;
PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014;
Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D.,
Wang L., Ye M., Zou H.;
"An enzyme assisted RP-RPLC approach for in-depth analysis of human
liver phosphoproteome.";
J. Proteomics 96:253-262(2014).
-!- FUNCTION: Involved in maintaining Golgi structure. Stimulates the
formation of Golgi stacks and ribbons. Involved in intra-Golgi
retrograde transport. {ECO:0000269|PubMed:12538640,
ECO:0000269|PubMed:15718469}.
-!- SUBUNIT: Homodimer. Interacts with RAB1A that has been activated
by GTP-binding, and possibly also with OCRL1. Interacts with
isoform CASP of CUX1. {ECO:0000269|PubMed:12538640,
ECO:0000269|PubMed:15718469, ECO:0000269|PubMed:9915833}.
-!- SUBCELLULAR LOCATION: Golgi apparatus membrane
{ECO:0000269|PubMed:9915833}; Single-pass type IV membrane protein
{ECO:0000269|PubMed:9915833}. Note=Found throughout the Golgi,
both on cisternae and, at higher abundance, on the tubulo-
vesicular structures of the cis-Golgi network.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q8TBA6-1; Sequence=Displayed;
Name=2;
IsoId=Q8TBA6-2; Sequence=VSP_007731, VSP_007732;
Note=No experimental confirmation available.;
-!- TISSUE SPECIFICITY: Ubiquitous. Highly expressed in seminiferous
tubules and Leydig cells in testis, and detected at much lower
levels in the other tissues tested. Expression is very low or not
detectable in spermatozoa. {ECO:0000269|PubMed:9915833}.
-!- PTM: Highly phosphorylated during mitosis. Phosphorylation is
barely detectable during interphase.
{ECO:0000269|PubMed:12538640}.
-!- DISEASE: Note=A chromosomal aberration involving GOLGA5 is found
in papillary thyroid carcinomas (PTCs). Translocation
t(10;14)(q11;q32) with RET. The translocation generates the
RET/GOLGA5 (PTC5) oncogene. {ECO:0000269|PubMed:2734021,
ECO:0000269|PubMed:9443391}.
-!- SEQUENCE CAUTION:
Sequence=CAA33787.1; Type=Miscellaneous discrepancy; Note=Chimeric cDNA. A chimeric cDNA originating from chromosomes 14 and 10.; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AF085199; AAD09753.1; -; mRNA.
EMBL; AY644768; AAV85456.1; -; mRNA.
EMBL; AL132987; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH471061; EAW81502.1; -; Genomic_DNA.
EMBL; BC023021; AAH23021.1; -; mRNA.
EMBL; X15786; CAA33787.1; ALT_SEQ; mRNA.
EMBL; AJ132949; CAB36967.1; -; mRNA.
EMBL; BX248744; CAD66551.1; -; mRNA.
CCDS; CCDS9905.1; -. [Q8TBA6-1]
PIR; I38153; I38153.
RefSeq; NP_005104.3; NM_005113.3.
RefSeq; XP_011535722.1; XM_011537420.2. [Q8TBA6-2]
UniGene; Hs.104320; -.
ProteinModelPortal; Q8TBA6; -.
SMR; Q8TBA6; -.
BioGrid; 115275; 57.
IntAct; Q8TBA6; 43.
STRING; 9606.ENSP00000163416; -.
iPTMnet; Q8TBA6; -.
PhosphoSitePlus; Q8TBA6; -.
DMDM; 296439337; -.
EPD; Q8TBA6; -.
MaxQB; Q8TBA6; -.
PaxDb; Q8TBA6; -.
PeptideAtlas; Q8TBA6; -.
PRIDE; Q8TBA6; -.
Ensembl; ENST00000163416; ENSP00000163416; ENSG00000066455. [Q8TBA6-1]
GeneID; 9950; -.
KEGG; hsa:9950; -.
UCSC; uc001yaz.3; human. [Q8TBA6-1]
CTD; 9950; -.
DisGeNET; 9950; -.
EuPathDB; HostDB:ENSG00000066455.12; -.
GeneCards; GOLGA5; -.
H-InvDB; HIX0011907; -.
HGNC; HGNC:4428; GOLGA5.
HPA; HPA000992; -.
HPA; HPA063876; -.
MalaCards; GOLGA5; -.
MIM; 606918; gene.
neXtProt; NX_Q8TBA6; -.
OpenTargets; ENSG00000066455; -.
Orphanet; 146; Papillary or follicular thyroid carcinoma.
PharmGKB; PA28809; -.
eggNOG; KOG4677; Eukaryota.
eggNOG; ENOG410XR4F; LUCA.
GeneTree; ENSGT00390000018470; -.
HOGENOM; HOG000273871; -.
HOVERGEN; HBG051755; -.
InParanoid; Q8TBA6; -.
OMA; NRVDQGA; -.
OrthoDB; EOG091G0HP5; -.
PhylomeDB; Q8TBA6; -.
TreeFam; TF319468; -.
Reactome; R-HSA-6811438; Intra-Golgi traffic.
ChiTaRS; GOLGA5; human.
GeneWiki; GOLGA5; -.
GenomeRNAi; 9950; -.
PRO; PR:Q8TBA6; -.
Proteomes; UP000005640; Chromosome 14.
Bgee; ENSG00000066455; -.
CleanEx; HS_GOLGA5; -.
ExpressionAtlas; Q8TBA6; baseline and differential.
Genevisible; Q8TBA6; HS.
GO; GO:0005801; C:cis-Golgi network; IDA:UniProtKB.
GO; GO:0005794; C:Golgi apparatus; IDA:UniProtKB.
GO; GO:0031985; C:Golgi cisterna; IDA:UniProtKB.
GO; GO:0000139; C:Golgi membrane; IBA:GO_Central.
GO; GO:0016021; C:integral component of membrane; IDA:UniProtKB.
GO; GO:0016020; C:membrane; IDA:UniProtKB.
GO; GO:0030133; C:transport vesicle; TAS:Reactome.
GO; GO:0042803; F:protein homodimerization activity; IPI:UniProtKB.
GO; GO:0017137; F:Rab GTPase binding; IDA:UniProtKB.
GO; GO:0007030; P:Golgi organization; IMP:UniProtKB.
GO; GO:0048193; P:Golgi vesicle transport; IMP:UniProtKB.
GO; GO:0000301; P:retrograde transport, vesicle recycling within Golgi; IBA:GO_Central.
InterPro; IPR019177; Golgin_subfamily_A_member_5.
Pfam; PF09787; Golgin_A5; 1.
1: Evidence at protein level;
Acetylation; Alternative splicing; Chromosomal rearrangement;
Coiled coil; Complete proteome; Golgi apparatus; Membrane;
Methylation; Phosphoprotein; Polymorphism; Reference proteome;
Transmembrane; Transmembrane helix.
INIT_MET 1 1 Removed. {ECO:0000244|PubMed:22223895}.
CHAIN 2 731 Golgin subfamily A member 5.
/FTId=PRO_0000190061.
TOPO_DOM 2 698 Cytoplasmic. {ECO:0000255}.
TRANSMEM 699 719 Helical; Anchor for type IV membrane
protein. {ECO:0000255}.
TOPO_DOM 720 731 Lumenal. {ECO:0000255}.
COILED 216 632 {ECO:0000255}.
SITE 497 498 Breakpoint for translocation to form RET-
GOLGA5 oncogene.
MOD_RES 2 2 N-acetylserine.
{ECO:0000244|PubMed:22223895}.
MOD_RES 89 89 Dimethylated arginine; alternate.
{ECO:0000250|UniProtKB:Q3ZU82}.
MOD_RES 89 89 Omega-N-methylated arginine; alternate.
{ECO:0000250}.
MOD_RES 116 116 Phosphoserine.
{ECO:0000244|PubMed:17081983,
ECO:0000244|PubMed:18669648,
ECO:0000244|PubMed:21406692,
ECO:0000244|PubMed:24275569}.
VAR_SEQ 684 691 SIRLGIFL -> RLCFTSGS (in isoform 2).
{ECO:0000303|Ref.9}.
/FTId=VSP_007731.
VAR_SEQ 692 731 Missing (in isoform 2).
{ECO:0000303|Ref.9}.
/FTId=VSP_007732.
VARIANT 67 67 A -> G (in dbSNP:rs17128572).
{ECO:0000269|PubMed:15489334}.
/FTId=VAR_055859.
VARIANT 486 486 M -> V (in dbSNP:rs34139657).
/FTId=VAR_055860.
CONFLICT 350 350 F -> L (in Ref. 1; AAD09753, 2; AAV85456,
4; EAW81502, 5; AAH23021, 6; CAA33787 and
8; CAB36967). {ECO:0000305}.
CONFLICT 584 585 QS -> PV (in Ref. 8; CAB36967).
{ECO:0000305}.
SEQUENCE 731 AA; 83024 MW; 650B5D46096A2DDE CRC64;
MSWFVDLAGK AEDLLNRVDQ GAATALSRKD NASNIYSKNT DYTELHQQNT DLIYQTGPKS
TYISSAADNI RNQKATILAG TANVKVGSRT PVEASHPVEN ASVPRPSSHF VRRKKSEPDD
ELLFDFLNSS QKEPTGRVEI RKEKGKTPVF QSSQTSSVSS VNPSVTTIKT IEENSFGSQT
HEAASNSDSS HEGQEESSKE NVSSNAACPD HTPTPNDDGK SHELSNLRLE NQLLRNEVQS
LNQEMASLLQ RSKETQEELN KARARVEKWN ADHSKSDRMT RGLRAQVDDL TEAVAAKDSQ
LAVLKVRLQE ADQLLSTRTE ALEALQSEKS RIMQDQSEGN SLQNQALQTF QERLHEADAT
LKREQESYKQ MQSEFAARLN KVEMERQNLA EAITLAERKY SDEKKRVDEL QQQVKLYKLN
LESSKQELID YKQKATRILQ SKEKLINSLK EGSGFEGLDS STASSMELEE LRHEKEMQRE
EIQKLMGQIH QLRSELQDME AQQVNEAESA REQLQDLHDQ IAGQKASKQE LETELERLKQ
EFHYIEEDLY RTKNTLQSRI KDRDEEIQKL RNQLTNKTLS NSSQSELENR LHQLTETLIQ
KQTMLESLST EKNSLVFQLE RLEQQMNSAS GSSSNGSSIN MSGIDNGEGT RLRNVPVLFN
DTETNLAGMY GKVRKAASSI DQFSIRLGIF LRRYPIARVF VIIYMALLHL WVMIVLLTYT
PEMHHDQPYG K


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