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HTH-type transcriptional repressor BdcR

 BDCR_ECOLI              Reviewed;         197 AA.
P39334; P76809; Q2M658;
01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
15-JUL-1998, sequence version 2.
28-MAR-2018, entry version 131.
RecName: Full=HTH-type transcriptional repressor BdcR;
Name=bdcR; Synonyms=yjgJ; OrderedLocusNames=b4251, JW4208;
Escherichia coli (strain K12).
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
NCBI_TaxID=83333;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
PubMed=7610040; DOI=10.1093/nar/23.12.2105;
Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L.,
Blattner F.R.;
"Analysis of the Escherichia coli genome VI: DNA sequence of the
region from 92.8 through 100 minutes.";
Nucleic Acids Res. 23:2105-2119(1995).
[2]
SEQUENCE REVISION.
STRAIN=K12 / MG1655 / ATCC 47076;
PubMed=9278503; DOI=10.1126/science.277.5331.1453;
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J.,
Mau B., Shao Y.;
"The complete genome sequence of Escherichia coli K-12.";
Science 277:1453-1462(1997).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
PubMed=16738553; DOI=10.1038/msb4100049;
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
"Highly accurate genome sequences of Escherichia coli K-12 strains
MG1655 and W3110.";
Mol. Syst. Biol. 2:E1-E5(2006).
[4]
FUNCTION AS A REGULATOR, AND GENE NAME.
STRAIN=K12 / BW25113;
PubMed=21059164; DOI=10.1111/j.1462-2920.2010.02368.x;
Ma Q., Yang Z., Pu M., Peti W., Wood T.K.;
"Engineering a novel c-di-GMP-binding protein for biofilm dispersal.";
Environ. Microbiol. 13:631-642(2011).
-!- FUNCTION: Negatively regulates expression of bdcA.
{ECO:0000269|PubMed:21059164}.
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EMBL; U14003; AAA97147.1; ALT_FRAME; Genomic_DNA.
EMBL; U00096; AAC77208.2; -; Genomic_DNA.
EMBL; AP009048; BAE78248.1; -; Genomic_DNA.
PIR; S56476; S56476.
RefSeq; NP_418672.4; NC_000913.3.
RefSeq; WP_000256658.1; NZ_LN832404.1.
ProteinModelPortal; P39334; -.
SMR; P39334; -.
BioGrid; 4259559; 174.
IntAct; P39334; 1.
STRING; 316385.ECDH10B_4444; -.
PaxDb; P39334; -.
PRIDE; P39334; -.
EnsemblBacteria; AAC77208; AAC77208; b4251.
EnsemblBacteria; BAE78248; BAE78248; BAE78248.
GeneID; 948775; -.
KEGG; ecj:JW4208; -.
KEGG; eco:b4251; -.
PATRIC; fig|1411691.4.peg.2453; -.
EchoBASE; EB2419; -.
EcoGene; EG12529; bdcR.
eggNOG; ENOG4108XFH; Bacteria.
eggNOG; ENOG4111MNX; LUCA.
HOGENOM; HOG000161265; -.
InParanoid; P39334; -.
KO; K19335; -.
OMA; HARGYDA; -.
PhylomeDB; P39334; -.
BioCyc; EcoCyc:G7882-MONOMER; -.
PRO; PR:P39334; -.
Proteomes; UP000000318; Chromosome.
Proteomes; UP000000625; Chromosome.
GO; GO:0005829; C:cytosol; IBA:GO_Central.
GO; GO:0003700; F:DNA binding transcription factor activity; IBA:GO_Central.
GO; GO:0000976; F:transcription regulatory region sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:EcoCyc.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
InterPro; IPR023772; DNA-bd_HTH_TetR-type_CS.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR001647; HTH_TetR.
InterPro; IPR036271; Tet_transcr_reg_TetR-rel_C_sf.
Pfam; PF00440; TetR_N; 1.
SUPFAM; SSF46689; SSF46689; 1.
SUPFAM; SSF48498; SSF48498; 1.
PROSITE; PS01081; HTH_TETR_1; 1.
PROSITE; PS50977; HTH_TETR_2; 1.
1: Evidence at protein level;
Complete proteome; DNA-binding; Reference proteome; Repressor;
Transcription; Transcription regulation.
CHAIN 1 197 HTH-type transcriptional repressor BdcR.
/FTId=PRO_0000070647.
DOMAIN 15 75 HTH tetR-type. {ECO:0000255|PROSITE-
ProRule:PRU00335}.
DNA_BIND 38 57 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00335}.
SEQUENCE 197 AA; 21502 MW; C1E81B87A27435BB CRC64;
MVTKKQSRVP GRPRRFAPEQ AISAAKVLFH QKGFDAVSVA EVTDYLGINP PSLYAAFGSK
AGLFSRVLNE YVGTEAIPLA DILRDDRPVG ECLVEVLKEA ARRYSQNGGC AGCMVLEGIH
SHDPQARDIA VQYYHAAETT IYDYIARRHP QRAQCVTDFM STVMSGLSAK AREGHSIEQL
CATAAMAGEA IKTILEE


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