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Heavy metal-associated isoprenylated plant protein 3 (AtHIP03) (AtHIPP3)

 HIP3_ARATH              Reviewed;         283 AA.
Q9FJH5;
13-APR-2016, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 1.
20-DEC-2017, entry version 112.
RecName: Full=Heavy metal-associated isoprenylated plant protein 3 {ECO:0000303|PubMed:21072340, ECO:0000303|PubMed:23368984};
Short=AtHIP03 {ECO:0000303|PubMed:21072340, ECO:0000303|PubMed:23368984};
Short=AtHIPP3 {ECO:0000303|PubMed:21072340, ECO:0000303|PubMed:23368984};
Flags: Precursor;
Name=HIPP03 {ECO:0000303|PubMed:21072340,
ECO:0000303|PubMed:23368984};
Synonyms=HIPP3 {ECO:0000303|PubMed:21072340};
OrderedLocusNames=At5g60800 {ECO:0000312|Araport:AT5G60800};
ORFNames=MAE1.5 {ECO:0000312|EMBL:BAB10101.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9872454; DOI=10.1093/dnares/5.5.297;
Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VII.
Sequence features of the regions of 1,013,767 bp covered by sixteen
physically assigned P1 and TAC clones.";
DNA Res. 5:297-308(1998).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[5]
NOMENCLATURE, AND GENE FAMILY.
PubMed=21072340; DOI=10.1039/c003484c;
Tehseen M., Cairns N., Sherson S., Cobbett C.S.;
"Metallochaperone-like genes in Arabidopsis thaliana.";
Metallomics 2:556-564(2010).
[6]
GENE FAMILY, AND NOMENCLATURE.
PubMed=23368984; DOI=10.1111/febs.12159;
de Abreu-Neto J.B., Turchetto-Zolet A.C., de Oliveira L.F.,
Zanettini M.H., Margis-Pinheiro M.;
"Heavy metal-associated isoprenylated plant protein (HIPP):
characterization of a family of proteins exclusive to plants.";
FEBS J. 280:1604-1616(2013).
[7]
FUNCTION, SUBCELLULAR LOCATION, INDUCTION, AND MUTAGENESIS OF CYS-36;
CYS-39; CYS-143 AND CYS-146.
PubMed=25913773; DOI=10.1111/nph.13419;
Zschiesche W., Barth O., Daniel K., Boehme S., Rausche J., Humbeck K.;
"The zinc-binding nuclear protein HIPP3 acts as an upstream regulator
of the salicylate-dependent plant immunity pathway and of flowering
time in Arabidopsis thaliana.";
New Phytol. 207:1084-1096(2015).
-!- FUNCTION: Heavy-metal-binding protein. Binds high amounts of zinc.
May act as an upstream regulator of the salicylate-dependent
pathogen response. Involved in abiotic stress responses, and seed
and flower development. {ECO:0000269|PubMed:25913773}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:25913773}.
Nucleus, nucleolus {ECO:0000269|PubMed:25913773}. Cytoplasm
{ECO:0000269|PubMed:25913773}. Note=Weakly expressed in the
cytoplasm. {ECO:0000269|PubMed:25913773}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=1;
Comment=A number of isoforms are produced. According to EST
sequences. {ECO:0000305};
Name=1;
IsoId=Q9FJH5-1; Sequence=Displayed;
-!- INDUCTION: Induced by infection with the bacterial pathogen P.
syringae pv. tomato DC3000. Repressed in response to drought and
abscisic acid (ABA). {ECO:0000269|PubMed:25913773}.
-!- MISCELLANEOUS: Plants over-expressing HIPP3 show delayed growth of
inflorescence. {ECO:0000269|PubMed:25913773}.
-!- SIMILARITY: Belongs to the HIPP family. {ECO:0000305}.
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EMBL; AB015472; BAB10101.1; -; Genomic_DNA.
EMBL; CP002688; AED97378.1; -; Genomic_DNA.
EMBL; BT004613; AAO42859.1; -; mRNA.
EMBL; AK227985; BAE99951.1; -; mRNA.
RefSeq; NP_200888.2; NM_125473.4. [Q9FJH5-1]
UniGene; At.43544; -.
ProteinModelPortal; Q9FJH5; -.
SMR; Q9FJH5; -.
STRING; 3702.AT5G60800.2; -.
PaxDb; Q9FJH5; -.
EnsemblPlants; AT5G60800.1; AT5G60800.1; AT5G60800. [Q9FJH5-1]
GeneID; 836201; -.
Gramene; AT5G60800.1; AT5G60800.1; AT5G60800. [Q9FJH5-1]
KEGG; ath:AT5G60800; -.
Araport; AT5G60800; -.
eggNOG; KOG1603; Eukaryota.
eggNOG; COG2608; LUCA.
HOGENOM; HOG000239741; -.
PhylomeDB; Q9FJH5; -.
PRO; PR:Q9FJH5; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q9FJH5; baseline and differential.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005730; C:nucleolus; IDA:UniProtKB.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0008270; F:zinc ion binding; IDA:UniProtKB.
GO; GO:0030001; P:metal ion transport; IEA:InterPro.
GO; GO:0009910; P:negative regulation of flower development; IMP:UniProtKB.
CDD; cd00371; HMA; 2.
InterPro; IPR006121; HMA_dom.
InterPro; IPR036163; HMA_dom_sf.
Pfam; PF00403; HMA; 2.
SUPFAM; SSF55008; SSF55008; 2.
PROSITE; PS50846; HMA_2; 1.
1: Evidence at protein level;
Alternative splicing; Complete proteome; Cytoplasm; Lipoprotein;
Metal-binding; Methylation; Nucleus; Prenylation; Reference proteome;
Repeat; Zinc.
CHAIN 1 280 Heavy metal-associated isoprenylated
plant protein 3.
/FTId=PRO_0000435853.
PROPEP 281 283 Removed in mature form. {ECO:0000305}.
/FTId=PRO_0000435854.
DOMAIN 27 84 HMA 1. {ECO:0000255|PROSITE-
ProRule:PRU00280}.
DOMAIN 133 196 HMA 2. {ECO:0000255|PROSITE-
ProRule:PRU00280}.
COMPBIAS 209 261 Gly-rich. {ECO:0000255|PROSITE-
ProRule:PRU00008}.
METAL 36 36 Zinc. {ECO:0000255|PROSITE-
ProRule:PRU00280,
ECO:0000269|PubMed:25913773}.
METAL 39 39 Zinc. {ECO:0000255|PROSITE-
ProRule:PRU00280,
ECO:0000269|PubMed:25913773}.
METAL 143 143 Zinc. {ECO:0000255|PROSITE-
ProRule:PRU00280,
ECO:0000269|PubMed:25913773}.
METAL 146 146 Zinc. {ECO:0000255|PROSITE-
ProRule:PRU00280,
ECO:0000269|PubMed:25913773}.
MOD_RES 280 280 Cysteine methyl ester.
{ECO:0000250|UniProtKB:Q9SZN7}.
LIPID 280 280 S-farnesyl cysteine.
{ECO:0000250|UniProtKB:Q9SZN7}.
MUTAGEN 36 36 C->G: Loss of zinc binding; in
association with C-39; C-143 and C-146.
{ECO:0000269|PubMed:25913773}.
MUTAGEN 39 39 C->G: Loss of zinc binding; in
association with C-36; C-143 and C-146.
{ECO:0000269|PubMed:25913773}.
MUTAGEN 143 143 C->G: Loss of zinc binding; in
association with C-36; C-39 and C-146.
{ECO:0000269|PubMed:25913773}.
MUTAGEN 146 146 C->G: Loss of zinc binding; in
association with C-36; C-39 and C-143.
{ECO:0000269|PubMed:25913773}.
SEQUENCE 283 AA; 30984 MW; 845E1DBDF5B0107C CRC64;
MGEKKNEGDN KKKGGDNKKK NETPSITVVL KVDMHCEGCA SRIVKCVRSF QGVETVKSES
ATGKLTVTGA LDPVKLREKL EEKTKKKVDL VSPQPKKEKE KENKNKNDED KKKSEEKKKP
DNNDKKPKET PVTTAVLKLN FHCQGCIGKI QKTVTKTKGV NGLTMDKEKN LLTVKGTMDV
KKLVEILSEK LKRAVEIVPP KKEKDKENGN ENGEKKKGGG GDGGGKEKTG NKGGGEGVNM
MEYMAAQPAY GYGYYPGGPY GYPIQAHAPQ IFSDENPNAC VVM


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