GENTAUR Molecular Products.

 F1P3J4_CHICK            Unreviewed;       425 AA.
 F1P3J4;
 03-MAY-2011, integrated into UniProtKB/TrEMBL.
 03-MAY-2011, sequence version 1.
 12-SEP-2018, entry version 65.
 RecName: Full=Hedgehog protein {ECO:0000256|RuleBase:RU280812};
 Name=SHH {ECO:0000313|Ensembl:ENSGALP00000010292};
 Gallus gallus (Chicken).
 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
 Phasianidae; Phasianinae; Gallus.
 NCBI_TaxID=9031 {ECO:0000313|Ensembl:ENSGALP00000010292, ECO:0000313|Proteomes:UP000000539};
 [1] {ECO:0000313|Ensembl:ENSGALP00000010292, ECO:0000313|Proteomes:UP000000539}
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
 STRAIN=Red jungle fowl {ECO:0000313|Ensembl:ENSGALP00000010292,
 ECO:0000313|Proteomes:UP000000539};
 PubMed=15592404; DOI=10.1038/nature03154;
 International Chicken Genome Sequencing Consortium;
 Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C.,
 Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E.,
 Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W.,
 Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A., Kremitzki C.,
 Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E.,
 Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J.,
 Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M.,
 Paton B., Smith J., Morrice D., Daniels L., Tempest H.G.,
 Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V.,
 Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J.,
 van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J.,
 Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H.,
 Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K.,
 Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E.,
 Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M.,
 Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S.,
 Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J.,
 Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H.,
 Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C.,
 Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C.,
 Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P.,
 King D.C., Yang S.-P., Tyekucheva S., Radakrishnan A., Harris R.S.,
 Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S.,
 Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S.,
 Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z.,
 Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J.,
 Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z.,
 Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M.,
 Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O.,
 Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J.,
 Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G.,
 Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D.,
 Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G.,
 Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A.,
 Mardis E.R., Wilson R.K.;
 "Sequence and comparative analysis of the chicken genome provide
 unique perspectives on vertebrate evolution.";
 Nature 432:695-716(2004).
 [2] {ECO:0000313|Ensembl:ENSGALP00000010292}
 IDENTIFICATION.
 STRAIN=Red jungle fowl {ECO:0000313|Ensembl:ENSGALP00000010292};
 Ensembl;
 Submitted (JUL-2011) to UniProtKB.
 -!- FUNCTION: Intercellular signal essential for a variety of
     patterning events during development.
     {ECO:0000256|RuleBase:RU280812}.
 -!- SIMILARITY: Belongs to the hedgehog family.
     {ECO:0000256|RuleBase:RU280812}.
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 EMBL; AADN04000102; -; NOT_ANNOTATED_CDS; Genomic_DNA.
 SMR; F1P3J4; -.
 Ensembl; ENSGALT00000010306; ENSGALP00000010292; ENSGALG00000006379.
 eggNOG; KOG3638; Eukaryota.
 eggNOG; ENOG410XQA3; LUCA.
 GeneTree; ENSGT00390000001117; -.
 OMA; EHSWAHR; -.
 OrthoDB; EOG091G0N90; -.
 PhylomeDB; F1P3J4; -.
 TreeFam; TF106458; -.
 Reactome; R-GGA-5358346; Hedgehog ligand biogenesis.
 Reactome; R-GGA-5362798; Release of Hh-Np from the secreting cell.
 Reactome; R-GGA-5632681; Ligand-receptor interactions.
 Reactome; R-GGA-5635838; Activation of SMO.
 Proteomes; UP000000539; Chromosome 2.
 Bgee; ENSGALG00000006379; Expressed in 6 organ(s), highest expression level in colon.
 GO; GO:0009986; C:cell surface; IEA:Ensembl.
 GO; GO:0031012; C:extracellular matrix; IEA:Ensembl.
 GO; GO:0005615; C:extracellular space; IDA:AgBase.
 GO; GO:0005622; C:intracellular; IEA:GOC.
 GO; GO:0045121; C:membrane raft; IEA:Ensembl.
 GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
 GO; GO:0005509; F:calcium ion binding; IEA:Ensembl.
 GO; GO:0005539; F:glycosaminoglycan binding; IEA:Ensembl.
 GO; GO:0043237; F:laminin-1 binding; IEA:Ensembl.
 GO; GO:0005113; F:patched binding; IEA:Ensembl.
 GO; GO:0008233; F:peptidase activity; IEA:UniProtKB-UniRule.
 GO; GO:0008270; F:zinc ion binding; IEA:Ensembl.
 GO; GO:0008209; P:androgen metabolic process; IEA:Ensembl.
 GO; GO:0048645; P:animal organ formation; IEA:Ensembl.
 GO; GO:0097190; P:apoptotic signaling pathway; IEA:Ensembl.
 GO; GO:0060840; P:artery development; IEA:Ensembl.
 GO; GO:0060020; P:Bergmann glial cell differentiation; IEA:Ensembl.
 GO; GO:0007596; P:blood coagulation; IEA:Ensembl.
 GO; GO:0001569; P:branching involved in blood vessel morphogenesis; IEA:Ensembl.
 GO; GO:0060445; P:branching involved in salivary gland morphogenesis; IEA:Ensembl.
 GO; GO:0001658; P:branching involved in ureteric bud morphogenesis; IEA:Ensembl.
 GO; GO:0060447; P:bud outgrowth involved in lung branching; IEA:Ensembl.
 GO; GO:0060070; P:canonical Wnt signaling pathway; IEA:Ensembl.
 GO; GO:0043369; P:CD4-positive or CD8-positive, alpha-beta T cell lineage commitment; IEA:Ensembl.
 GO; GO:0001709; P:cell fate determination; NAS:AgBase.
 GO; GO:0060573; P:cell fate specification involved in pattern specification; NAS:AgBase.
 GO; GO:0071285; P:cellular response to lithium ion; IEA:Ensembl.
 GO; GO:0021930; P:cerebellar granule cell precursor proliferation; IEA:Ensembl.
 GO; GO:0060591; P:chondroblast differentiation; IMP:AgBase.
 GO; GO:0071679; P:commissural neuron axon guidance; IMP:AgBase.
 GO; GO:0003140; P:determination of left/right asymmetry in lateral mesoderm; IEA:Ensembl.
 GO; GO:0021904; P:dorsal/ventral neural tube patterning; IEA:Ensembl.
 GO; GO:0007398; P:ectoderm development; IEA:Ensembl.
 GO; GO:0048557; P:embryonic digestive tract morphogenesis; IEA:Ensembl.
 GO; GO:0042733; P:embryonic digit morphogenesis; IEA:Ensembl.
 GO; GO:0048617; P:embryonic foregut morphogenesis; IEA:Ensembl.
 GO; GO:0035115; P:embryonic forelimb morphogenesis; IEA:Ensembl.
 GO; GO:0035116; P:embryonic hindlimb morphogenesis; IEA:Ensembl.
 GO; GO:0009880; P:embryonic pattern specification; IMP:AgBase.
 GO; GO:0060059; P:embryonic retina morphogenesis in camera-type eye; IMP:AgBase.
 GO; GO:0048706; P:embryonic skeletal system development; IEA:Ensembl.
 GO; GO:0006897; P:endocytosis; IEA:Ensembl.
 GO; GO:0060664; P:epithelial cell proliferation involved in salivary gland morphogenesis; IEA:Ensembl.
 GO; GO:0030010; P:establishment of cell polarity; IEA:Ensembl.
 GO; GO:0090269; P:fibroblast growth factor production; IDA:AgBase.
 GO; GO:0021508; P:floor plate formation; IMP:AgBase.
 GO; GO:0048859; P:formation of anatomical boundary; IEA:Ensembl.
 GO; GO:0003430; P:growth plate cartilage chondrocyte growth; IMP:AgBase.
 GO; GO:0001947; P:heart looping; IEA:Ensembl.
 GO; GO:0007442; P:hindgut morphogenesis; IEA:Ensembl.
 GO; GO:0048877; P:homeostasis of number of retina cells; IMP:AgBase.
 GO; GO:0048839; P:inner ear development; IEA:Ensembl.
 GO; GO:0016539; P:intein-mediated protein splicing; IEA:InterPro.
 GO; GO:0045109; P:intermediate filament organization; IEA:Ensembl.
 GO; GO:0060459; P:left lung development; IEA:Ensembl.
 GO; GO:0060174; P:limb bud formation; IEA:Ensembl.
 GO; GO:0060428; P:lung epithelium development; IEA:Ensembl.
 GO; GO:0060463; P:lung lobe morphogenesis; IEA:Ensembl.
 GO; GO:0060484; P:lung-associated mesenchyme development; IEA:Ensembl.
 GO; GO:0002320; P:lymphoid progenitor cell differentiation; IEA:Ensembl.
 GO; GO:0030539; P:male genitalia development; IEA:Ensembl.
 GO; GO:0060916; P:mesenchymal cell proliferation involved in lung development; IEA:Ensembl.
 GO; GO:0060783; P:mesenchymal smoothened signaling pathway involved in prostate gland development; IEA:Ensembl.
 GO; GO:0072136; P:metanephric mesenchymal cell proliferation involved in metanephros development; IEA:Ensembl.
 GO; GO:0030901; P:midbrain development; IEA:Ensembl.
 GO; GO:0045445; P:myoblast differentiation; IEA:Ensembl.
 GO; GO:0014902; P:myotube differentiation; IEA:Ensembl.
 GO; GO:0046639; P:negative regulation of alpha-beta T cell differentiation; IEA:Ensembl.
 GO; GO:0030514; P:negative regulation of BMP signaling pathway; IMP:AgBase.
 GO; GO:0090090; P:negative regulation of canonical Wnt signaling pathway; IEA:Ensembl.
 GO; GO:0030336; P:negative regulation of cell migration; IEA:Ensembl.
 GO; GO:0090370; P:negative regulation of cholesterol efflux; IEA:Ensembl.
 GO; GO:1904339; P:negative regulation of dopaminergic neuron differentiation; IEA:Ensembl.
 GO; GO:2000357; P:negative regulation of kidney smooth muscle cell differentiation; IEA:Ensembl.
 GO; GO:2001054; P:negative regulation of mesenchymal cell apoptotic process; IEA:Ensembl.
 GO; GO:0032435; P:negative regulation of proteasomal ubiquitin-dependent protein catabolic process; IEA:Ensembl.
 GO; GO:0042130; P:negative regulation of T cell proliferation; IEA:Ensembl.
 GO; GO:0034244; P:negative regulation of transcription elongation from RNA polymerase II promoter; IEA:Ensembl.
 GO; GO:2000062; P:negative regulation of ureter smooth muscle cell differentiation; IEA:Ensembl.
 GO; GO:0045060; P:negative thymic T cell selection; IEA:Ensembl.
 GO; GO:0001755; P:neural crest cell migration; IEA:Ensembl.
 GO; GO:0007405; P:neuroblast proliferation; IEA:Ensembl.
 GO; GO:0048663; P:neuron fate commitment; IEA:Ensembl.
 GO; GO:0014003; P:oligodendrocyte development; IEA:Ensembl.
 GO; GO:0003408; P:optic cup formation involved in camera-type eye development; IMP:AgBase.
 GO; GO:0021631; P:optic nerve morphogenesis; IMP:AgBase.
 GO; GO:0002076; P:osteoblast development; IEA:Ensembl.
 GO; GO:0031016; P:pancreas development; IEA:Ensembl.
 GO; GO:0009949; P:polarity specification of anterior/posterior axis; IEA:Ensembl.
 GO; GO:0009951; P:polarity specification of dorsal/ventral axis; NAS:AgBase.
 GO; GO:0010694; P:positive regulation of alkaline phosphatase activity; IDA:AgBase.
 GO; GO:0046638; P:positive regulation of alpha-beta T cell differentiation; IEA:Ensembl.
 GO; GO:0051781; P:positive regulation of cell division; IEA:Ensembl.
 GO; GO:0010770; P:positive regulation of cell morphogenesis involved in differentiation; IMP:AgBase.
 GO; GO:0060769; P:positive regulation of epithelial cell proliferation involved in prostate gland development; IEA:Ensembl.
 GO; GO:0010628; P:positive regulation of gene expression; IMP:AgBase.
 GO; GO:0007228; P:positive regulation of hh target transcription factor activity; IEA:Ensembl.
 GO; GO:0033092; P:positive regulation of immature T cell proliferation in thymus; IEA:Ensembl.
 GO; GO:2000358; P:positive regulation of kidney smooth muscle cell differentiation; IEA:Ensembl.
 GO; GO:2000729; P:positive regulation of mesenchymal cell proliferation involved in ureter development; IEA:Ensembl.
 GO; GO:0061075; P:positive regulation of neural retina development; IMP:AgBase.
 GO; GO:0002052; P:positive regulation of neuroblast proliferation; IEA:Ensembl.
 GO; GO:0048714; P:positive regulation of oligodendrocyte differentiation; IEA:Ensembl.
 GO; GO:0045669; P:positive regulation of osteoblast differentiation; IDA:AgBase.
 GO; GO:0042307; P:positive regulation of protein import into nucleus; IEA:Ensembl.
 GO; GO:0061189; P:positive regulation of sclerotome development; IEA:Ensembl.
 GO; GO:0014858; P:positive regulation of skeletal muscle cell proliferation; IEA:Ensembl.
 GO; GO:0048643; P:positive regulation of skeletal muscle tissue development; IEA:Ensembl.
 GO; GO:0045880; P:positive regulation of smoothened signaling pathway; IEA:Ensembl.
 GO; GO:0051155; P:positive regulation of striated muscle cell differentiation; IEA:Ensembl.
 GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:Ensembl.
 GO; GO:2000063; P:positive regulation of ureter smooth muscle cell differentiation; IEA:Ensembl.
 GO; GO:0030177; P:positive regulation of Wnt signaling pathway; IEA:Ensembl.
 GO; GO:0045059; P:positive thymic T cell selection; IEA:Ensembl.
 GO; GO:0060516; P:primary prostatic bud elongation; IEA:Ensembl.
 GO; GO:0060523; P:prostate epithelial cord elongation; IEA:Ensembl.
 GO; GO:0034504; P:protein localization to nucleus; IEA:Ensembl.
 GO; GO:0030166; P:proteoglycan biosynthetic process; IMP:AgBase.
 GO; GO:0060785; P:regulation of apoptosis involved in tissue homeostasis; IMP:AgBase.
 GO; GO:0060786; P:regulation of cell differentiation involved in tissue homeostasis; TAS:AgBase.
 GO; GO:0010468; P:regulation of gene expression; IMP:AgBase.
 GO; GO:0060782; P:regulation of mesenchymal cell proliferation involved in prostate gland development; IEA:Ensembl.
 GO; GO:2000177; P:regulation of neural precursor cell proliferation; IMP:AgBase.
 GO; GO:0042481; P:regulation of odontogenesis; IEA:Ensembl.
 GO; GO:0060685; P:regulation of prostatic bud formation; IEA:Ensembl.
 GO; GO:0001895; P:retina homeostasis; IMP:AgBase.
 GO; GO:0003406; P:retinal pigment epithelium development; IMP:AgBase.
 GO; GO:0060458; P:right lung development; IEA:Ensembl.
 GO; GO:0060021; P:roof of mouth development; IEA:Ensembl.
 GO; GO:0060662; P:salivary gland cavitation; IEA:Ensembl.
 GO; GO:0097264; P:self proteolysis; IDA:AgBase.
 GO; GO:0043588; P:skin development; IEA:Ensembl.
 GO; GO:0021938; P:smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation; IEA:Ensembl.
 GO; GO:0061053; P:somite development; IEA:Ensembl.
 GO; GO:0021513; P:spinal cord dorsal/ventral patterning; IMP:AgBase.
 GO; GO:0021522; P:spinal cord motor neuron differentiation; IEA:Ensembl.
 GO; GO:0014706; P:striated muscle tissue development; IEA:Ensembl.
 GO; GO:0021978; P:telencephalon regionalization; IEA:Ensembl.
 GO; GO:0021794; P:thalamus development; IEA:Ensembl.
 GO; GO:0048538; P:thymus development; IEA:Ensembl.
 GO; GO:0030878; P:thyroid gland development; IEA:Ensembl.
 GO; GO:0009888; P:tissue development; IMP:AgBase.
 GO; GO:0060439; P:trachea morphogenesis; IEA:Ensembl.
 GO; GO:1905327; P:tracheoesophageal septum formation; IEA:Ensembl.
 GO; GO:0001570; P:vasculogenesis; IEA:Ensembl.
 Gene3D; 3.30.1380.10; -; 1.
 InterPro; IPR001657; Hedgehog.
 InterPro; IPR009045; Hedgehog_sig/DD-Pept_Zn-bd_sf.
 InterPro; IPR000320; Hedgehog_signalling_dom.
 InterPro; IPR001767; Hint_dom.
 InterPro; IPR003586; Hint_dom_C.
 InterPro; IPR003587; Hint_dom_N.
 InterPro; IPR036844; Hint_dom_sf.
 InterPro; IPR006141; Intein_N.
 Pfam; PF01085; HH_signal; 1.
 Pfam; PF01079; Hint; 1.
 PIRSF; PIRSF009400; Peptidase_C46; 1.
 PRINTS; PR00632; SONICHHOG.
 SMART; SM00305; HintC; 1.
 SMART; SM00306; HintN; 1.
 SUPFAM; SSF51294; SSF51294; 1.
 SUPFAM; SSF55166; SSF55166; 1.
 PROSITE; PS50817; INTEIN_N_TER; 1.
 3: Inferred from homology;
 Autocatalytic cleavage {ECO:0000256|RuleBase:RU280812};
 Calcium {ECO:0000256|PIRSR:PIRSR009400-2};
 Cell membrane {ECO:0000256|RuleBase:RU280812};
 Complete proteome {ECO:0000313|Proteomes:UP000000539};
 Developmental protein {ECO:0000256|RuleBase:RU280812};
 Hydrolase {ECO:0000256|RuleBase:RU280812};
 Membrane {ECO:0000256|RuleBase:RU280812};
 Metal-binding {ECO:0000256|PIRSR:PIRSR009400-2};
 Protease {ECO:0000256|RuleBase:RU280812};
 Reference proteome {ECO:0000313|Proteomes:UP000000539};
 Signal {ECO:0000256|RuleBase:RU280812, ECO:0000256|SAM:SignalP};
 Zinc {ECO:0000256|PIRSR:PIRSR009400-2}.
 SIGNAL        1     26       {ECO:0000256|SAM:SignalP}.
 CHAIN        27    425       Hedgehog protein.
                              {ECO:0000256|SAM:SignalP}.
                              /FTId=PRO_5003268621.
 DOMAIN      199    310       HintN. {ECO:0000259|SMART:SM00306}.
 DOMAIN      313    358       HintC. {ECO:0000259|SMART:SM00305}.
 METAL        92     92       Calcium 1.
                              {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL        93     93       Calcium 1.
                              {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL        93     93       Calcium 2.
                              {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL        98     98       Calcium 1.
                              {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL       128    128       Calcium 1; via carbonyl oxygen.
                              {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL       129    129       Calcium 1.
                              {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL       129    129       Calcium 2.
                              {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL       132    132       Calcium 2.
                              {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL       134    134       Calcium 2.
                              {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL       143    143       Zinc. {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL       150    150       Zinc. {ECO:0000256|PIRSR:PIRSR009400-2}.
 METAL       185    185       Zinc. {ECO:0000256|PIRSR:PIRSR009400-2}.
 SITE        200    201       Cleavage; by autolysis.
                              {ECO:0000256|PIRSR:PIRSR009400-1}.
 SITE        246    246       Involved in cholesterol transfer.
                              {ECO:0000256|PIRSR:PIRSR009400-1}.
 SITE        270    270       Involved in auto-cleavage.
                              {ECO:0000256|PIRSR:PIRSR009400-1}.
 SITE        273    273       Essential for auto-cleavage.
                              {ECO:0000256|PIRSR:PIRSR009400-1}.
 SEQUENCE   425 AA;  46488 MW;  144948CDC12FF8EC CRC64;
 MDEMLLLTRI LLVGFICALL VSSGLTCGPG RGIGKRRHPK KLTPLAYKQF IPNVAEKTLG
 ASGRYEGKIT RNSERFKELT PNYNPDIIFK DEENTGADRL MTQRCKDKLN ALAISVMNQW
 PGVKLRVTEG WDEDGHHSEE SLHYEGRAVD ITTSDRDRSK YGMLARLAVE AGFDWVYYES
 KAHIHCSVKA ENSVAAKSGG CFPGSATVHL EHGGTKLVKD LSPGDRVLAA DADGRLLYSD
 FLTFLDREDS SRKLFYVIET RQPRARLLLT AAHLLFVAPQ HNQSEATGST SGQALFASNV
 KPGQRVYVLG EGGQQLLPAS VHSVSLREEA SGAYAPLTAQ GTILINRVLA SCYAVIEEHS
 WAHWAFAPFR LAQGLLAALC PDGAIPTAAT TTTGIHWYSR LLYRIGSWVL DGDALHPLGM
 VAPAS

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