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Hepatocyte nuclear factor 1-alpha (HNF-1-alpha) (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1) (Transcription factor 1) (TCF-1)

 HNF1A_RAT               Reviewed;         628 AA.
P15257;
01-APR-1990, integrated into UniProtKB/Swiss-Prot.
01-APR-1990, sequence version 1.
22-NOV-2017, entry version 173.
RecName: Full=Hepatocyte nuclear factor 1-alpha;
Short=HNF-1-alpha;
Short=HNF-1A;
AltName: Full=Liver-specific transcription factor LF-B1;
Short=LFB1;
AltName: Full=Transcription factor 1;
Short=TCF-1;
Name=Hnf1a; Synonyms=Hnf-1, Hnf-1a, Tcf1;
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
NCBI_TaxID=10116;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Liver;
PubMed=2571419; DOI=10.1016/0092-8674(89)90877-5;
Frain M., Swart G., Monaci P., Nicosia A., Staempfli S., Frank R.,
Cortese R.;
"The liver-specific transcription factor LF-B1 contains a highly
diverged homeobox DNA binding domain.";
Cell 59:145-157(1989).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=2216777; DOI=10.1093/nar/18.19.5853;
Chouard T., Blumenfeld M., Bach I., Vandekerckhove J., Cereghini S.,
Yaniv M.;
"A distal dimerization domain is essential for DNA-binding by the
atypical HNF1 homeodomain.";
Nucleic Acids Res. 18:5853-5863(1990).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-12.
STRAIN=Sprague-Dawley;
PubMed=7937157; DOI=10.1093/nar/22.20.4284;
Piaggio G., Tomei L., Toniatti C., De Francesco R., Gerstner J.,
Cortese R.;
"LFB1/HNF1 acts as a repressor of its own transcription.";
Nucleic Acids Res. 22:4284-4290(1994).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 166-628.
PubMed=1970973; DOI=10.1101/gad.4.3.372;
Baumhueter S., Mendel D.B., Conley P.B., Kuo C.J., Turk C.,
Graves M.K., Edwards C.A., Courtois G., Crabtree G.R.;
"HNF-1 shares three sequence motifs with the POU domain proteins and
is identical to LF-B1 and APF.";
Genes Dev. 4:372-379(1990).
[5]
NUCLEOTIDE SEQUENCE OF 199-279.
PubMed=1354855; DOI=10.1093/nar/20.16.4199;
Bach I., Pontoglio M., Yaniv M.;
"Structure of the gene encoding hepatocyte nuclear factor 1 (HNF1).";
Nucleic Acids Res. 20:4199-4204(1992).
[6]
POSITION OF HOMEOBOX.
PubMed=1967225; DOI=10.1016/0092-8674(90)90708-M;
Finney M.;
"The homeodomain of the transcription factor LF-B1 has a 21 amino acid
loop between helix 2 and helix 3.";
Cell 60:5-6(1990).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-74 AND SER-247, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22673903; DOI=10.1038/ncomms1871;
Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A.,
Lundby C., Olsen J.V.;
"Quantitative maps of protein phosphorylation sites across 14
different rat organs and tissues.";
Nat. Commun. 3:876-876(2012).
[8]
STRUCTURE BY NMR OF 1-32.
PubMed=1988016; DOI=10.1021/bi00215a022;
Pastore A., de Francesco R., Barbato G., Castiglione Morelli M.A.,
Motta A., Cortese R.;
"1H resonance assignment and secondary structure determination of the
dimerization domain of transcription factor LFB1.";
Biochemistry 30:148-153(1991).
[9]
STRUCTURE BY NMR OF 195-286.
PubMed=8491172;
Leiting B., de Francesco R., Tomei L., Cortese R., Otting G.,
Wuethrich K.;
"The three-dimensional NMR-solution structure of the polypeptide
fragment 195-286 of the LFB1/HNF1 transcription factor from rat liver
comprises a nonclassical homeodomain.";
EMBO J. 12:1797-1803(1993).
[10]
STRUCTURE BY NMR OF 195-286.
PubMed=9126845; DOI=10.1006/jmbi.1997.0905;
Schott O., Billeter M., Leiting B., Wider G., Wuethrich K.;
"The NMR solution structure of the non-classical homeodomain from the
rat liver LFB1/HNF1 transcription factor.";
J. Mol. Biol. 267:673-683(1997).
[11]
X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF 195-286.
PubMed=8491173;
Ceska T.A., Lamers M., Monaci P., Nicosia A., Cortese R., Suck D.;
"The X-ray structure of an atypical homeodomain present in the rat
liver transcription factor LFB1/HNF1 and implications for DNA
binding.";
EMBO J. 12:1805-1810(1993).
-!- FUNCTION: Transcriptional activator that regulates the tissue
specific expression of multiple genes, especially in pancreatic
islet cells and in liver. Required for the expression of several
liver specific genes. Binds to the inverted palindrome 5'-
GTTAATNATTAAC-3'.
-!- SUBUNIT: Binds DNA as a dimer. Interacts with PCBD1.
Heterotetramer with PCBD1; formed by a dimer of dimers (By
similarity). {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Nucleus.
-!- TISSUE SPECIFICITY: Liver.
-!- SIMILARITY: Belongs to the HNF1 homeobox family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=CAA37387.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; J03170; AAA41524.1; -; mRNA.
EMBL; X54423; CAA38295.1; -; mRNA.
EMBL; X67649; CAA47891.1; -; Genomic_DNA.
EMBL; X53297; CAA37387.1; ALT_INIT; mRNA.
PIR; A33333; A33333.
PIR; S25485; S25485.
RefSeq; NP_036801.1; NM_012669.1.
UniGene; Rn.9660; -.
PDB; 1LFB; X-ray; 2.80 A; A=195-286.
PDB; 2LFB; NMR; -; A=195-286.
PDBsum; 1LFB; -.
PDBsum; 2LFB; -.
ProteinModelPortal; P15257; -.
SMR; P15257; -.
BioGrid; 246939; 1.
STRING; 10116.ENSRNOP00000001565; -.
iPTMnet; P15257; -.
PhosphoSitePlus; P15257; -.
PaxDb; P15257; -.
PRIDE; P15257; -.
Ensembl; ENSRNOT00000001565; ENSRNOP00000001565; ENSRNOG00000001183.
GeneID; 24817; -.
KEGG; rno:24817; -.
CTD; 6927; -.
RGD; 3828; Hnf1a.
eggNOG; ENOG410IFA0; Eukaryota.
eggNOG; ENOG410ZZZ0; LUCA.
GeneTree; ENSGT00900000141012; -.
HOGENOM; HOG000015305; -.
HOVERGEN; HBG005980; -.
InParanoid; P15257; -.
KO; K08036; -.
OMA; QSHVAQS; -.
OrthoDB; EOG091G052F; -.
PhylomeDB; P15257; -.
TreeFam; TF320327; -.
EvolutionaryTrace; P15257; -.
PRO; PR:P15257; -.
Proteomes; UP000002494; Chromosome 12.
Bgee; ENSRNOG00000001183; -.
Genevisible; P15257; RN.
GO; GO:0005737; C:cytoplasm; ISO:RGD.
GO; GO:0005634; C:nucleus; IDA:RGD.
GO; GO:0001750; C:photoreceptor outer segment; ISO:RGD.
GO; GO:0045120; C:pronucleus; ISO:RGD.
GO; GO:0043234; C:protein complex; ISO:RGD.
GO; GO:0005667; C:transcription factor complex; ISO:RGD.
GO; GO:0003677; F:DNA binding; IDA:MGI.
GO; GO:0003690; F:double-stranded DNA binding; IDA:RGD.
GO; GO:0046983; F:protein dimerization activity; ISO:RGD.
GO; GO:0046982; F:protein heterodimerization activity; ISO:RGD.
GO; GO:0042803; F:protein homodimerization activity; ISO:RGD.
GO; GO:0000978; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding; ISO:RGD.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:RGD.
GO; GO:0001221; F:transcription cofactor binding; IPI:RGD.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:MGI.
GO; GO:0008134; F:transcription factor binding; IPI:RGD.
GO; GO:0044212; F:transcription regulatory region DNA binding; ISS:UniProtKB.
GO; GO:0001077; F:transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding; IDA:BHF-UCL.
GO; GO:0001228; F:transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding; ISO:RGD.
GO; GO:0015721; P:bile acid and bile salt transport; ISO:RGD.
GO; GO:0006699; P:bile acid biosynthetic process; ISO:RGD.
GO; GO:0001824; P:blastocyst development; ISO:RGD.
GO; GO:0045453; P:bone resorption; ISO:RGD.
GO; GO:0008203; P:cholesterol metabolic process; ISO:RGD.
GO; GO:0006338; P:chromatin remodeling; ISO:RGD.
GO; GO:0030326; P:embryonic limb morphogenesis; ISO:RGD.
GO; GO:0031018; P:endocrine pancreas development; ISO:RGD.
GO; GO:0006633; P:fatty acid biosynthetic process; ISO:RGD.
GO; GO:0015908; P:fatty acid transport; ISO:RGD.
GO; GO:0042593; P:glucose homeostasis; ISO:RGD.
GO; GO:0046323; P:glucose import; ISO:RGD.
GO; GO:0006783; P:heme biosynthetic process; ISO:RGD.
GO; GO:0016573; P:histone acetylation; ISO:RGD.
GO; GO:0030073; P:insulin secretion; ISO:RGD.
GO; GO:0001889; P:liver development; ISO:RGD.
GO; GO:0001779; P:natural killer cell differentiation; ISO:RGD.
GO; GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:RGD.
GO; GO:0048341; P:paraxial mesoderm formation; ISO:RGD.
GO; GO:0001890; P:placenta development; ISO:RGD.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:BHF-UCL.
GO; GO:0060261; P:positive regulation of transcription initiation from RNA polymerase II promoter; ISO:RGD.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IPI:MGI.
GO; GO:0008104; P:protein localization; ISO:RGD.
GO; GO:0046883; P:regulation of hormone secretion; ISO:RGD.
GO; GO:0050796; P:regulation of insulin secretion; ISO:RGD.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISO:RGD.
GO; GO:0006355; P:regulation of transcription, DNA-templated; ISO:RGD.
GO; GO:0030111; P:regulation of Wnt signaling pathway; ISO:RGD.
GO; GO:0035623; P:renal glucose absorption; ISO:RGD.
GO; GO:0048608; P:reproductive structure development; ISO:RGD.
GO; GO:0009749; P:response to glucose; ISO:RGD.
GO; GO:0006979; P:response to oxidative stress; ISO:RGD.
GO; GO:0043691; P:reverse cholesterol transport; ISO:RGD.
GO; GO:0060395; P:SMAD protein signal transduction; ISO:RGD.
GO; GO:0006366; P:transcription from RNA polymerase II promoter; IDA:RGD.
CDD; cd00086; homeodomain; 1.
InterPro; IPR006899; HNF-1_N.
InterPro; IPR023219; HNF1_dimer_N_dom_sf.
InterPro; IPR006898; HNF1a_C.
InterPro; IPR006897; HNF1b_C.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR001356; Homeobox_dom.
InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
Pfam; PF04814; HNF-1_N; 1.
Pfam; PF04813; HNF-1A_C; 1.
Pfam; PF04812; HNF-1B_C; 1.
Pfam; PF00046; Homeobox; 1.
SMART; SM00389; HOX; 1.
SUPFAM; SSF100957; SSF100957; 1.
SUPFAM; SSF46689; SSF46689; 1.
SUPFAM; SSF47413; SSF47413; 1.
PROSITE; PS00027; HOMEOBOX_1; 1.
PROSITE; PS50071; HOMEOBOX_2; 1.
1: Evidence at protein level;
3D-structure; Activator; Complete proteome; DNA-binding; Homeobox;
Nucleus; Phosphoprotein; Reference proteome; Transcription;
Transcription regulation.
CHAIN 1 628 Hepatocyte nuclear factor 1-alpha.
/FTId=PRO_0000049117.
DNA_BIND 199 279 Homeobox; HNF1-type.
{ECO:0000255|PROSITE-ProRule:PRU00108}.
REGION 1 31 Dimerization.
REGION 130 132 Interaction with DNA. {ECO:0000250}.
REGION 143 149 Interaction with DNA. {ECO:0000250}.
REGION 155 158 Interaction with DNA. {ECO:0000250}.
REGION 203 206 Interaction with DNA. {ECO:0000250}.
REGION 263 265 Interaction with DNA. {ECO:0000250}.
REGION 270 273 Interaction with DNA. {ECO:0000250}.
MOTIF 197 205 Nuclear localization signal.
{ECO:0000255}.
COMPBIAS 71 80 Asp/Glu-rich (acidic; potential
involvement with transcription).
MOD_RES 70 70 Phosphoserine.
{ECO:0000250|UniProtKB:P22361}.
MOD_RES 74 74 Phosphothreonine.
{ECO:0000244|PubMed:22673903}.
MOD_RES 93 93 Phosphoserine.
{ECO:0000250|UniProtKB:P20823}.
MOD_RES 247 247 Phosphoserine.
{ECO:0000244|PubMed:22673903}.
MOD_RES 313 313 Phosphoserine.
{ECO:0000250|UniProtKB:P22361}.
HELIX 208 218 {ECO:0000244|PDB:1LFB}.
HELIX 226 241 {ECO:0000244|PDB:1LFB}.
TURN 242 245 {ECO:0000244|PDB:1LFB}.
TURN 251 254 {ECO:0000244|PDB:1LFB}.
HELIX 255 257 {ECO:0000244|PDB:1LFB}.
HELIX 261 273 {ECO:0000244|PDB:1LFB}.
SEQUENCE 628 AA; 67213 MW; 8D28099308C86A52 CRC64;
MVSKLSQLQT ELLAALLESG LSKEALIQAL GEPGPYLMVG DGPLDKGESC GGTRGDLTEL
PNGLGETRGS EDDTDDDGED FAPPILKELE NLSPEEAAHQ KAVVESLLQE DPWRVAKMVK
SYLQQHNIPQ REVVDTTGLN QSHLSQHLNK GTPMKTQKRA ALYTWYVRKQ REVAQQFTHA
GQGGLIEEPT GDELPTKKGR RNRFKWGPAS QQILFQAYER QKNPSKEERE TLVEECNRAE
CIQRGVSPSQ AQGLGSNLVT EVRVYNWFAN RRKEEAFRHK LAMDTYNGPP PGPGPGPALP
AHSSPGLPTT TLSPSKVHGV RYGQSATSEA AEVPSSSGGP LVTVSAALHQ VSPTGLEPSS
LLSTEAKLVS ATGGPLPPVS TLTALHSLEQ TSPGLNQQPQ NLIMASLPGV MTIGPGEPAS
LGPTFTNTGA STLVIGLAST QAQSVPVINS MGSSLTTLQP VQFSQPLHPS YQQPLMPPVQ
SHVAQSPFMA TMAQLQSPHA LYSHKPEVAQ YTHTSLLPQT MLITDTNLST LASLTPTKQV
FTSDTEASSE PGLHEPSSPA TTIHIPSQDP SNIQHLQPAH RLSTSPTVSS SSLVLYQSSD
SNGHSHLLPS NHGVIETFIS TQMASSSQ


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