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Heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) (PEN repeat clone P9) (hnRNP core protein A1-A)

 ROA1_DROME              Reviewed;         365 AA.
P07909; Q24359; Q24360; Q99361; Q9VAU7; Q9VAU8;
01-AUG-1988, integrated into UniProtKB/Swiss-Prot.
01-AUG-1988, sequence version 1.
25-OCT-2017, entry version 160.
RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1;
AltName: Full=PEN repeat clone P9;
AltName: Full=hnRNP core protein A1-A;
Name=Hrb98DE; Synonyms=Pen9; ORFNames=CG9983;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM B).
STRAIN=Oregon-R; TISSUE=Pupae;
PubMed=3031652; DOI=10.1073/pnas.84.7.1819;
Haynes S.R., Rebbert M.L., Mozer B.A., Forquignon F., Dawid I.B.;
"Pen repeat sequences are GGN clusters and encode a glycine-rich
domain in a Drosophila cDNA homologous to the rat helix destabilizing
protein.";
Proc. Natl. Acad. Sci. U.S.A. 84:1819-1823(1987).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS A; B; D AND E), AND
DEVELOPMENTAL STAGE.
STRAIN=Canton-S, and Oregon-R; TISSUE=Embryo, Ovary, and Pupae;
PubMed=2104660; DOI=10.1128/MCB.10.1.316;
Haynes S.R., Raychaudhuri G., Beyer A.L.;
"The Drosophila Hrb98DE locus encodes four protein isoforms homologous
to the A1 protein of mammalian heterogeneous nuclear ribonucleoprotein
complexes.";
Mol. Cell. Biol. 10:316-323(1990).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[4]
GENOME REANNOTATION, AND ALTERNATIVE SPLICING.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM D).
STRAIN=Berkeley; TISSUE=Embryo;
PubMed=12537569; DOI=10.1186/gb-2002-3-12-research0080;
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M.,
George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H.,
Rubin G.M., Celniker S.E.;
"A Drosophila full-length cDNA resource.";
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002).
-!- FUNCTION: This protein is a component of ribonucleosomes.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=4;
Name=B; Synonyms=C;
IsoId=P07909-1; Sequence=Displayed;
Name=A;
IsoId=P07909-2; Sequence=VSP_005827;
Name=E;
IsoId=P07909-3; Sequence=VSP_005828;
Name=D; Synonyms=F;
IsoId=P07909-4; Sequence=VSP_005829;
-!- DEVELOPMENTAL STAGE: Expressed both maternally and zygotically.
Highest zygotic expression found in adult females and pupae.
{ECO:0000269|PubMed:2104660}.
-----------------------------------------------------------------------
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EMBL; M15766; AAA70426.1; -; mRNA.
EMBL; M25545; AAA28621.1; -; Genomic_DNA.
EMBL; M28871; AAA28621.1; JOINED; Genomic_DNA.
EMBL; M28872; AAA28621.1; JOINED; Genomic_DNA.
EMBL; M33955; AAA28621.1; JOINED; Genomic_DNA.
EMBL; M31560; AAA28621.1; JOINED; Genomic_DNA.
EMBL; M25545; AAA28622.1; -; Genomic_DNA.
EMBL; M28870; AAA28622.1; JOINED; Genomic_DNA.
EMBL; M28872; AAA28622.1; JOINED; Genomic_DNA.
EMBL; M33955; AAA28622.1; JOINED; Genomic_DNA.
EMBL; M31560; AAA28622.1; JOINED; Genomic_DNA.
EMBL; M25545; AAA28623.1; -; Genomic_DNA.
EMBL; M28870; AAA28623.1; JOINED; Genomic_DNA.
EMBL; M28872; AAA28623.1; JOINED; Genomic_DNA.
EMBL; M33955; AAA28623.1; JOINED; Genomic_DNA.
EMBL; M31560; AAA28623.1; JOINED; Genomic_DNA.
EMBL; M25545; AAA28624.1; -; Genomic_DNA.
EMBL; M28871; AAA28624.1; JOINED; Genomic_DNA.
EMBL; M28872; AAA28624.1; JOINED; Genomic_DNA.
EMBL; M33955; AAA28624.1; JOINED; Genomic_DNA.
EMBL; M31560; AAA28624.1; JOINED; Genomic_DNA.
EMBL; AE014297; AAF56800.2; -; Genomic_DNA.
EMBL; AE014297; AAF56801.1; -; Genomic_DNA.
EMBL; AE014297; AAN14141.1; -; Genomic_DNA.
EMBL; AE014297; AAN14143.1; -; Genomic_DNA.
EMBL; AY061448; AAL28996.1; -; mRNA.
PIR; A26459; A26459.
RefSeq; NP_524543.1; NM_079819.3. [P07909-1]
RefSeq; NP_733249.1; NM_170370.2. [P07909-2]
RefSeq; NP_733250.1; NM_170371.2. [P07909-3]
RefSeq; NP_733251.1; NM_170372.2. [P07909-1]
RefSeq; NP_733252.1; NM_170373.2. [P07909-4]
RefSeq; NP_733253.1; NM_170374.2. [P07909-4]
UniGene; Dm.7147; -.
ProteinModelPortal; P07909; -.
SMR; P07909; -.
BioGrid; 68261; 28.
DIP; DIP-19217N; -.
IntAct; P07909; 8.
MINT; MINT-764040; -.
STRING; 7227.FBpp0084669; -.
PaxDb; P07909; -.
PRIDE; P07909; -.
EnsemblMetazoa; FBtr0085298; FBpp0084667; FBgn0001215. [P07909-2]
EnsemblMetazoa; FBtr0085299; FBpp0084668; FBgn0001215. [P07909-3]
EnsemblMetazoa; FBtr0085300; FBpp0084669; FBgn0001215. [P07909-1]
EnsemblMetazoa; FBtr0085301; FBpp0084670; FBgn0001215. [P07909-1]
EnsemblMetazoa; FBtr0085302; FBpp0084671; FBgn0001215. [P07909-4]
EnsemblMetazoa; FBtr0085303; FBpp0084672; FBgn0001215. [P07909-4]
GeneID; 43385; -.
KEGG; dme:Dmel_CG9983; -.
CTD; 43385; -.
FlyBase; FBgn0001215; Hrb98DE.
eggNOG; KOG0118; Eukaryota.
eggNOG; COG0724; LUCA.
GeneTree; ENSGT00900000140828; -.
InParanoid; P07909; -.
KO; K12741; -.
OMA; QDEHTID; -.
OrthoDB; EOG091G1CPI; -.
PhylomeDB; P07909; -.
Reactome; R-DME-6803529; FGFR2 alternative splicing.
Reactome; R-DME-72163; mRNA Splicing - Major Pathway.
Reactome; R-DME-72203; Processing of Capped Intron-Containing Pre-mRNA.
ChiTaRS; Hrb98DE; fly.
GenomeRNAi; 43385; -.
PRO; PR:P07909; -.
Proteomes; UP000000803; Chromosome 3R.
Bgee; FBgn0001215; -.
ExpressionAtlas; P07909; differential.
Genevisible; P07909; DM.
GO; GO:0030529; C:intracellular ribonucleoprotein complex; IDA:FlyBase.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0005703; C:polytene chromosome puff; IDA:FlyBase.
GO; GO:0048027; F:mRNA 5'-UTR binding; IDA:FlyBase.
GO; GO:0003729; F:mRNA binding; ISS:FlyBase.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0001745; P:compound eye morphogenesis; IGI:FlyBase.
GO; GO:0036099; P:female germ-line stem cell population maintenance; IMP:FlyBase.
GO; GO:0033119; P:negative regulation of RNA splicing; IMP:FlyBase.
GO; GO:0048477; P:oogenesis; IMP:FlyBase.
GO; GO:0045727; P:positive regulation of translation; IMP:FlyBase.
GO; GO:0000381; P:regulation of alternative mRNA splicing, via spliceosome; IMP:FlyBase.
GO; GO:0010906; P:regulation of glucose metabolic process; IMP:FlyBase.
InterPro; IPR035979; RBD_domain_sf.
InterPro; IPR000504; RRM_dom.
Pfam; PF00076; RRM_1; 2.
SMART; SM00360; RRM; 2.
SUPFAM; SSF54928; SSF54928; 2.
PROSITE; PS50102; RRM; 2.
2: Evidence at transcript level;
Alternative splicing; Complete proteome; Nucleus; Reference proteome;
Repeat; Ribonucleoprotein; RNA-binding.
CHAIN 1 365 Heterogeneous nuclear ribonucleoprotein
A1.
/FTId=PRO_0000081834.
DOMAIN 31 107 RRM 1. {ECO:0000255|PROSITE-
ProRule:PRU00176}.
DOMAIN 122 199 RRM 2. {ECO:0000255|PROSITE-
ProRule:PRU00176}.
COMPBIAS 206 365 Gly-rich.
VAR_SEQ 1 21 MVNSNQNQNGNSNGHDDDFPQ -> MGGHDNWNNGQNEEQD
(in isoform E).
{ECO:0000303|PubMed:2104660}.
/FTId=VSP_005828.
VAR_SEQ 1 16 MVNSNQNQNGNSNGHD -> MGGHDNWNNGQNEEQ (in
isoform A). {ECO:0000303|PubMed:2104660}.
/FTId=VSP_005827.
VAR_SEQ 18 21 Missing (in isoform D).
{ECO:0000303|PubMed:12537569,
ECO:0000303|PubMed:2104660}.
/FTId=VSP_005829.
SEQUENCE 365 AA; 39038 MW; BCC707CA2A2EC580 CRC64;
MVNSNQNQNG NSNGHDDDFP QDSITEPEHM RKLFIGGLDY RTTDENLKAH FEKWGNIVDV
VVMKDPRTKR SRGFGFITYS HSSMIDEAQK SRPHKIDGRV VEPKRAVPRQ DIDSPNAGAT
VKKLFVGALK DDHDEQSIRD YFQHFGNIVD INIVIDKETG KKRGFAFVEF DDYDPVDKVV
LQKQHQLNGK MVDVKKALPK QNDQQGGGGG RGGPGGRAGG NRGNMGGGNY GNQNGGGNWN
NGGNNWGNNR GGNDNWGNNS FGGGGGGGGG YGGGNNSWGN NNPWDNGNGG GNFGGGGNNW
NNGGNDFGGY QQNYGGGPQR GGGNFNNNRM QPYQGGGGFK AGGGNQGNYG GNNQGFNNGG
NNRRY


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