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High mobility group AT-hook 2 (Non-histone chromosomal architectural protein HMGI-C)

 O88791_RAT              Unreviewed;       107 AA.
O88791; F1M940;
01-NOV-1998, integrated into UniProtKB/TrEMBL.
01-NOV-1998, sequence version 1.
31-JAN-2018, entry version 102.
SubName: Full=High mobility group AT-hook 2 {ECO:0000313|EMBL:EDM16566.1, ECO:0000313|Ensembl:ENSRNOP00000061041};
SubName: Full=Non-histone chromosomal architectural protein HMGI-C {ECO:0000313|EMBL:AAC25950.1};
Name=Hmga2 {ECO:0000313|EMBL:EDM16566.1,
ECO:0000313|Ensembl:ENSRNOP00000061041, ECO:0000313|RGD:620617};
ORFNames=rCG_49178 {ECO:0000313|EMBL:EDM16566.1};
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
NCBI_TaxID=10116 {ECO:0000313|EMBL:AAC25950.1};
[1] {ECO:0000313|EMBL:AAC25950.1}
NUCLEOTIDE SEQUENCE.
PubMed=9312114; DOI=10.1074/jbc.272.40.25062;
Li D., Lin H.H., McMahon M., Ma H., Ann D.K.;
"Oncogenic raf-1 induces the expression of non-histone chromosomal
architectural protein HMGI-C via a p44/p42 mitogen-activated protein
kinase-dependent pathway in salivary epithelial cells.";
J. Biol. Chem. 272:25062-25070(1997).
[2] {ECO:0000313|Ensembl:ENSRNOP00000061041, ECO:0000313|Proteomes:UP000002494}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000061041,
ECO:0000313|Proteomes:UP000002494};
PubMed=15057822; DOI=10.1038/nature02426;
Rat Genome Sequencing Project Consortium;
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
Collins F.S.;
"Genome sequence of the Brown Norway rat yields insights into
mammalian evolution.";
Nature 428:493-521(2004).
[3] {ECO:0000313|EMBL:EDM16566.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDM16566.1};
PubMed=15632090; DOI=10.1101/gr.2889405;
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M.,
Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z.,
Istrail S., Li P., Sutton G.;
"Gene and alternative splicing annotation with AIR.";
Genome Res. 15:54-66(2005).
[4] {ECO:0000313|EMBL:EDM16566.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDM16566.1};
Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H.,
Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M.,
Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L.,
Lu F., Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C.,
Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[5] {ECO:0000313|Ensembl:ENSRNOP00000061041}
IDENTIFICATION.
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000061041};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
[6] {ECO:0000213|PubMed:22673903}
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22673903;
Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A.,
Lundby C., Olsen J.V.;
"Quantitative maps of protein phosphorylation sites across 14
different rat organs and tissues.";
Nat. Commun. 3:876-876(2012).
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EMBL; AABR07057302; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; U89695; AAC25950.1; -; mRNA.
EMBL; CH473960; EDM16566.1; -; Genomic_DNA.
RefSeq; NP_114459.1; NM_032070.1.
UniGene; Rn.29981; -.
STRING; 10116.ENSRNOP00000061041; -.
Ensembl; ENSRNOT00000065137; ENSRNOP00000061041; ENSRNOG00000042460.
GeneID; 84017; -.
KEGG; rno:84017; -.
CTD; 8091; -.
RGD; 620617; Hmga2.
eggNOG; ENOG410IZGR; Eukaryota.
eggNOG; ENOG410YWK3; LUCA.
GeneTree; ENSGT00730000111387; -.
HOVERGEN; HBG051913; -.
KO; K09283; -.
OMA; PRKWPRK; -.
OrthoDB; EOG091G17KT; -.
Proteomes; UP000002494; Chromosome 7.
Bgee; ENSRNOG00000042460; -.
GO; GO:0000228; C:nuclear chromosome; ISS:UniProtKB.
GO; GO:0005634; C:nucleus; IDA:RGD.
GO; GO:0032993; C:protein-DNA complex; ISS:UniProtKB.
GO; GO:0035985; C:senescence-associated heterochromatin focus; ISS:UniProtKB.
GO; GO:0071141; C:SMAD protein complex; ISS:UniProtKB.
GO; GO:0051575; F:5'-deoxyribose-5-phosphate lyase activity; ISS:UniProtKB.
GO; GO:0003680; F:AT DNA binding; ISS:UniProtKB.
GO; GO:0070742; F:C2H2 zinc finger domain binding; ISS:UniProtKB.
GO; GO:0035497; F:cAMP response element binding; ISS:UniProtKB.
GO; GO:0001047; F:core promoter binding; ISS:UniProtKB.
GO; GO:0003700; F:DNA binding transcription factor activity; IBA:GO_Central.
GO; GO:0008301; F:DNA binding, bending; ISS:UniProtKB.
GO; GO:0003906; F:DNA-(apurinic or apyrimidinic site) lyase activity; ISS:UniProtKB.
GO; GO:0004677; F:DNA-dependent protein kinase activity; ISS:UniProtKB.
GO; GO:0019899; F:enzyme binding; IPI:RGD.
GO; GO:0035501; F:MH1 domain binding; ISS:UniProtKB.
GO; GO:0035500; F:MH2 domain binding; ISS:UniProtKB.
GO; GO:0031492; F:nucleosomal DNA binding; ISS:UniProtKB.
GO; GO:0046332; F:SMAD binding; ISO:RGD.
GO; GO:0008134; F:transcription factor binding; ISO:RGD.
GO; GO:0044212; F:transcription regulatory region DNA binding; ISS:UniProtKB.
GO; GO:0001077; F:transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding; ISO:RGD.
GO; GO:0001078; F:transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding; ISS:UniProtKB.
GO; GO:0060612; P:adipose tissue development; ISO:RGD.
GO; GO:0030325; P:adrenal gland development; ISO:RGD.
GO; GO:0006284; P:base-excision repair; ISS:UniProtKB.
GO; GO:0008283; P:cell proliferation; ISO:RGD.
GO; GO:0021846; P:cell proliferation in forebrain; ISO:RGD.
GO; GO:0002062; P:chondrocyte differentiation; ISS:UniProtKB.
GO; GO:0035988; P:chondrocyte proliferation; ISS:UniProtKB.
GO; GO:0031052; P:chromosome breakage; ISS:UniProtKB.
GO; GO:0042769; P:DNA damage response, detection of DNA damage; ISS:UniProtKB.
GO; GO:0035987; P:endodermal cell differentiation; ISS:UniProtKB.
GO; GO:0001837; P:epithelial to mesenchymal transition; ISS:UniProtKB.
GO; GO:0060441; P:epithelial tube branching involved in lung morphogenesis; ISO:RGD.
GO; GO:0045444; P:fat cell differentiation; ISS:UniProtKB.
GO; GO:0060613; P:fat pad development; ISO:RGD.
GO; GO:0031507; P:heterochromatin assembly; ISS:UniProtKB.
GO; GO:0035978; P:histone H2A-S139 phosphorylation; ISS:UniProtKB.
GO; GO:0060428; P:lung epithelium development; ISO:RGD.
GO; GO:0008584; P:male gonad development; ISO:RGD.
GO; GO:0048762; P:mesenchymal cell differentiation; ISS:UniProtKB.
GO; GO:0048333; P:mesodermal cell differentiation; ISS:UniProtKB.
GO; GO:0003131; P:mesodermal-endodermal cell signaling; ISS:UniProtKB.
GO; GO:0007095; P:mitotic G2 DNA damage checkpoint; ISS:UniProtKB.
GO; GO:0043922; P:negative regulation by host of viral transcription; ISS:UniProtKB.
GO; GO:0043066; P:negative regulation of apoptotic process; ISS:UniProtKB.
GO; GO:0048712; P:negative regulation of astrocyte differentiation; ISO:RGD.
GO; GO:2000773; P:negative regulation of cellular senescence; ISO:RGD.
GO; GO:0043392; P:negative regulation of DNA binding; ISS:UniProtKB.
GO; GO:2001033; P:negative regulation of double-strand break repair via nonhomologous end joining; ISS:UniProtKB.
GO; GO:0033144; P:negative regulation of intracellular steroid hormone receptor signaling pathway; IDA:RGD.
GO; GO:0046426; P:negative regulation of JAK-STAT cascade; IDA:RGD.
GO; GO:0045869; P:negative regulation of single stranded viral RNA replication via double stranded DNA intermediate; ISS:UniProtKB.
GO; GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:RGD.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0030178; P:negative regulation of Wnt signaling pathway; ISO:RGD.
GO; GO:0090402; P:oncogene-induced cell senescence; ISS:UniProtKB.
GO; GO:0021983; P:pituitary gland development; ISO:RGD.
GO; GO:0045766; P:positive regulation of angiogenesis; ISO:RGD.
GO; GO:0043065; P:positive regulation of apoptotic process; ISS:UniProtKB.
GO; GO:0071158; P:positive regulation of cell cycle arrest; ISS:UniProtKB.
GO; GO:0008284; P:positive regulation of cell proliferation; ISO:RGD.
GO; GO:0071864; P:positive regulation of cell proliferation in bone marrow; ISO:RGD.
GO; GO:2000685; P:positive regulation of cellular response to X-ray; ISS:UniProtKB.
GO; GO:2000774; P:positive regulation of cellular senescence; ISS:UniProtKB.
GO; GO:0051091; P:positive regulation of DNA binding transcription factor activity; IMP:RGD.
GO; GO:0060501; P:positive regulation of epithelial cell proliferation involved in lung morphogenesis; ISO:RGD.
GO; GO:0010628; P:positive regulation of gene expression; ISS:UniProtKB.
GO; GO:0040018; P:positive regulation of multicellular organism growth; ISO:RGD.
GO; GO:2001022; P:positive regulation of response to DNA damage stimulus; ISS:UniProtKB.
GO; GO:2000648; P:positive regulation of stem cell proliferation; ISS:UniProtKB.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
GO; GO:2000679; P:positive regulation of transcription regulatory region DNA binding; ISS:UniProtKB.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; ISO:RGD.
GO; GO:0010564; P:regulation of cell cycle process; ISS:UniProtKB.
GO; GO:2001038; P:regulation of cellular response to drug; ISS:UniProtKB.
GO; GO:0060123; P:regulation of growth hormone secretion; ISO:RGD.
GO; GO:0090276; P:regulation of peptide hormone secretion; ISO:RGD.
GO; GO:2000036; P:regulation of stem cell population maintenance; ISS:UniProtKB.
GO; GO:0006355; P:regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0009615; P:response to virus; ISO:RGD.
GO; GO:0035986; P:senescence-associated heterochromatin focus assembly; ISS:UniProtKB.
GO; GO:0007165; P:signal transduction; IMP:RGD.
GO; GO:0035019; P:somatic stem cell population maintenance; ISO:RGD.
GO; GO:0007283; P:spermatogenesis; ISO:RGD.
GO; GO:0048863; P:stem cell differentiation; ISO:RGD.
InterPro; IPR017956; AT_hook_DNA-bd_motif.
InterPro; IPR000116; HMGA.
InterPro; IPR000637; HMGI/Y_DNA-bd_CS.
Pfam; PF02178; AT_hook; 3.
PRINTS; PR00929; ATHOOK.
PRINTS; PR00930; HIGHMOBLTYIY.
SMART; SM00384; AT_hook; 3.
PROSITE; PS00354; HMGI_Y; 1.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000002494};
Reference proteome {ECO:0000313|Proteomes:UP000002494}.
SEQUENCE 107 AA; 11676 MW; FEEEAFFF56F6B643 CRC64;
MSARGEGAGQ PSTSAQGQPA TPAPQKRGRG RPRKQPQEPT CEPSPKRPRG RPKGSKNKSP
SKAAQKKAET IGEKRPRGRP RKWPQQIVQK PAQETEETSS QESAEED


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