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High mobility group protein HMGI-C (High mobility group AT-hook protein 2)

 HMGA2_MOUSE             Reviewed;         108 AA.
P52927; Q3UQW0;
01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
01-OCT-1996, sequence version 1.
05-JUL-2017, entry version 146.
RecName: Full=High mobility group protein HMGI-C;
AltName: Full=High mobility group AT-hook protein 2;
Name=Hmga2; Synonyms=Hmgic;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=1762909; DOI=10.1093/nar/19.24.6793;
Manfioletti G., Giancotti V., Bandiera A., Buratti E., Sautiere P.,
Cary P., Crane-Robinson C., Coles B., Goodwin G.H.;
"cDNA cloning of the HMGI-C phosphoprotein, a nuclear protein
associated with neoplastic and undifferentiated phenotypes.";
Nucleic Acids Res. 19:6793-6797(1991).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=8566786; DOI=10.1016/0378-1119(95)00666-4;
Manfioletti G., Rustighi A., Mantovani F., Goodwin G.H., Giancotti V.;
"Isolation and characterization of the gene coding for murine high-
mobility-group protein HMGI-C.";
Gene 167:249-253(1995).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
PubMed=8918814; DOI=10.1093/nar/24.20.4071;
Zhou X., Benson K.F., Przybysz K., Liu J., Hou Y., Cherath L.,
Chada K.;
"Genomic structure and expression of the murine Hmgi-c gene.";
Nucleic Acids Res. 24:4071-4077(1996).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Eye;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Embryo, and Limb;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
FUNCTION, SUBCELLULAR LOCATION, PHOSPHORYLATION, INTERACTION WITH
NEK2, AND TISSUE SPECIFICITY.
PubMed=14668482; DOI=10.1091/mbc.E03-09-0638;
Di Agostino S., Fedele M., Chieffi P., Fusco A., Rossi P., Geremia R.,
Sette C.;
"Phosphorylation of high-mobility group protein A2 by Nek2 kinase
during the first meiotic division in mouse spermatocytes.";
Mol. Biol. Cell 15:1224-1232(2004).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-104, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Embryonic fibroblast;
PubMed=19131326; DOI=10.1074/mcp.M800451-MCP200;
Sweet S.M., Bailey C.M., Cunningham D.L., Heath J.K., Cooper H.J.;
"Large scale localization of protein phosphorylation by use of
electron capture dissociation mass spectrometry.";
Mol. Cell. Proteomics 8:904-912(2009).
[8]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-100 AND SER-104, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Brain, Kidney, Liver, Lung, Pancreas, Spleen, and Testis;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and
expression.";
Cell 143:1174-1189(2010).
[9]
FUNCTION, DEVELOPMENTAL STAGE, AND TISSUE SPECIFICITY.
PubMed=27446912; DOI=10.3389/fcell.2016.00058;
Alonso-Martin S., Rochat A., Mademtzoglou D., Morais J.,
de Reynies A., Aurade F., Chang T.H., Zammit P.S., Relaix F.;
"Gene expression profiling of muscle stem cells identifies novel
regulators of postnatal myogenesis.";
Front. Cell Dev. Biol. 4:58-58(2016).
-!- FUNCTION: Functions as a transcriptional regulator. Functions in
cell cycle regulation through CCNA2. Plays an important role in
chromosome condensation during the meiotic G2/M transition of
spermatocytes. Plays a role in postnatal myogenesis, is involved
in satellite cell activation (PubMed:27446912).
{ECO:0000269|PubMed:14668482, ECO:0000269|PubMed:27446912}.
-!- SUBUNIT: Interacts with E4F1 (By similarity). Interacts with NEK2
(PubMed:14668482). {ECO:0000250|UniProtKB:P52926,
ECO:0000269|PubMed:14668482}.
-!- INTERACTION:
P06400:RB1 (xeno); NbExp=5; IntAct=EBI-912574, EBI-491274;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:14668482}.
-!- TISSUE SPECIFICITY: Expressed in mitotic spermatogonia, meiotic
spermatocytes, and postmeiotic round spermatids (at protein level)
(PubMed:14668482). Expressed in embronic myogenic progenitor cells
(PubMed:27446912). {ECO:0000269|PubMed:14668482,
ECO:0000269|PubMed:27446912}.
-!- DEVELOPMENTAL STAGE: Expressed predominantly during embryogenesis.
In myogenic progenitor cells, expressed during early myogenic
development (E11.5) to be gradually down-regulated during the
fetal stages (E17.5) (PubMed:27446912).
{ECO:0000269|PubMed:27446912}.
-!- PTM: Regulated by cell cycle-dependent phosphorylation which
alters its DNA binding affinity. Phosphorylated by NEK2.
{ECO:0000269|PubMed:14668482}.
-!- SIMILARITY: Belongs to the HMGA family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; L41621; AAC69244.1; -; Genomic_DNA.
EMBL; L41617; AAC69244.1; JOINED; Genomic_DNA.
EMBL; L41618; AAC69244.1; JOINED; Genomic_DNA.
EMBL; L41619; AAC69244.1; JOINED; Genomic_DNA.
EMBL; L41620; AAC69244.1; JOINED; Genomic_DNA.
EMBL; X58380; CAA41270.1; -; mRNA.
EMBL; X99915; CAA68187.1; -; Genomic_DNA.
EMBL; X99916; CAA68187.1; JOINED; Genomic_DNA.
EMBL; X99917; CAA68187.1; JOINED; Genomic_DNA.
EMBL; X99918; CAA68187.1; JOINED; Genomic_DNA.
EMBL; X99919; CAA68187.1; JOINED; Genomic_DNA.
EMBL; AK028346; BAC25896.1; -; mRNA.
EMBL; AK142059; BAE24928.1; -; mRNA.
EMBL; BC052158; AAH52158.1; -; mRNA.
EMBL; BC085085; AAH85085.1; -; mRNA.
CCDS; CCDS36073.1; -.
PIR; JC4575; JC4575.
RefSeq; NP_001334099.1; NM_001347170.1.
RefSeq; NP_034571.1; NM_010441.3.
UniGene; Mm.157190; -.
BioGrid; 200341; 7.
IntAct; P52927; 476.
MINT; MINT-1847926; -.
STRING; 10090.ENSMUSP00000072556; -.
iPTMnet; P52927; -.
PhosphoSitePlus; P52927; -.
MaxQB; P52927; -.
PaxDb; P52927; -.
PeptideAtlas; P52927; -.
PRIDE; P52927; -.
Ensembl; ENSMUST00000072777; ENSMUSP00000072556; ENSMUSG00000056758.
GeneID; 15364; -.
KEGG; mmu:15364; -.
UCSC; uc007hfb.1; mouse.
CTD; 8091; -.
MGI; MGI:101761; Hmga2.
eggNOG; ENOG410IZGR; Eukaryota.
eggNOG; ENOG410YWK3; LUCA.
GeneTree; ENSGT00730000111387; -.
HOGENOM; HOG000076308; -.
HOVERGEN; HBG051913; -.
InParanoid; P52927; -.
KO; K09283; -.
OMA; PRKWPRK; -.
PhylomeDB; P52927; -.
TreeFam; TF351623; -.
Reactome; R-MMU-2559584; Formation of Senescence-Associated Heterochromatin Foci (SAHF).
ChiTaRS; Hmga2; mouse.
PRO; PR:P52927; -.
Proteomes; UP000000589; Chromosome 10.
Bgee; ENSMUSG00000056758; -.
CleanEx; MM_HMGA2; -.
ExpressionAtlas; P52927; baseline and differential.
Genevisible; P52927; MM.
GO; GO:0000228; C:nuclear chromosome; IDA:MGI.
GO; GO:0005634; C:nucleus; IDA:MGI.
GO; GO:0032993; C:protein-DNA complex; ISS:UniProtKB.
GO; GO:0035985; C:senescence-associated heterochromatin focus; ISS:UniProtKB.
GO; GO:0071141; C:SMAD protein complex; ISS:UniProtKB.
GO; GO:0051575; F:5'-deoxyribose-5-phosphate lyase activity; ISS:UniProtKB.
GO; GO:0003680; F:AT DNA binding; IDA:MGI.
GO; GO:0070742; F:C2H2 zinc finger domain binding; ISS:UniProtKB.
GO; GO:0035497; F:cAMP response element binding; ISS:UniProtKB.
GO; GO:0001047; F:core promoter binding; ISS:UniProtKB.
GO; GO:0008301; F:DNA binding, bending; ISS:UniProtKB.
GO; GO:0003906; F:DNA-(apurinic or apyrimidinic site) lyase activity; ISS:UniProtKB.
GO; GO:0004677; F:DNA-dependent protein kinase activity; ISS:UniProtKB.
GO; GO:0035501; F:MH1 domain binding; ISS:UniProtKB.
GO; GO:0035500; F:MH2 domain binding; ISS:UniProtKB.
GO; GO:0031492; F:nucleosomal DNA binding; ISS:UniProtKB.
GO; GO:0000975; F:regulatory region DNA binding; ISS:UniProtKB.
GO; GO:0001077; F:transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding; IDA:MGI.
GO; GO:0001078; F:transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding; ISS:UniProtKB.
GO; GO:0060612; P:adipose tissue development; IMP:MGI.
GO; GO:0030325; P:adrenal gland development; IMP:MGI.
GO; GO:0006284; P:base-excision repair; ISS:UniProtKB.
GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
GO; GO:0008283; P:cell proliferation; IMP:MGI.
GO; GO:0021846; P:cell proliferation in forebrain; IMP:MGI.
GO; GO:0002062; P:chondrocyte differentiation; ISS:UniProtKB.
GO; GO:0035988; P:chondrocyte proliferation; ISS:UniProtKB.
GO; GO:0031052; P:chromosome breakage; ISS:UniProtKB.
GO; GO:0030261; P:chromosome condensation; IEA:UniProtKB-KW.
GO; GO:0042769; P:DNA damage response, detection of DNA damage; ISS:UniProtKB.
GO; GO:0035987; P:endodermal cell differentiation; ISS:UniProtKB.
GO; GO:0001837; P:epithelial to mesenchymal transition; ISS:UniProtKB.
GO; GO:0060441; P:epithelial tube branching involved in lung morphogenesis; IMP:MGI.
GO; GO:0045444; P:fat cell differentiation; ISS:UniProtKB.
GO; GO:0060613; P:fat pad development; IGI:MGI.
GO; GO:0031507; P:heterochromatin assembly; ISS:UniProtKB.
GO; GO:0035978; P:histone H2A-S139 phosphorylation; ISS:UniProtKB.
GO; GO:0060428; P:lung epithelium development; IMP:MGI.
GO; GO:0008584; P:male gonad development; IMP:MGI.
GO; GO:0051321; P:meiotic cell cycle; IEA:UniProtKB-KW.
GO; GO:0048762; P:mesenchymal cell differentiation; ISS:UniProtKB.
GO; GO:0048333; P:mesodermal cell differentiation; ISS:UniProtKB.
GO; GO:0003131; P:mesodermal-endodermal cell signaling; ISS:UniProtKB.
GO; GO:0007095; P:mitotic G2 DNA damage checkpoint; ISS:UniProtKB.
GO; GO:0043922; P:negative regulation by host of viral transcription; ISS:UniProtKB.
GO; GO:0043066; P:negative regulation of apoptotic process; ISS:UniProtKB.
GO; GO:0048712; P:negative regulation of astrocyte differentiation; IDA:MGI.
GO; GO:0043392; P:negative regulation of DNA binding; ISS:UniProtKB.
GO; GO:2001033; P:negative regulation of double-strand break repair via nonhomologous end joining; ISS:UniProtKB.
GO; GO:0045869; P:negative regulation of single stranded viral RNA replication via double stranded DNA intermediate; ISS:UniProtKB.
GO; GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0030178; P:negative regulation of Wnt signaling pathway; IMP:MGI.
GO; GO:0090402; P:oncogene-induced cell senescence; ISS:UniProtKB.
GO; GO:0021983; P:pituitary gland development; IMP:MGI.
GO; GO:0043065; P:positive regulation of apoptotic process; ISS:UniProtKB.
GO; GO:0071158; P:positive regulation of cell cycle arrest; ISS:UniProtKB.
GO; GO:0008284; P:positive regulation of cell proliferation; IMP:MGI.
GO; GO:2000685; P:positive regulation of cellular response to X-ray; ISS:UniProtKB.
GO; GO:2000774; P:positive regulation of cellular senescence; ISS:UniProtKB.
GO; GO:0060501; P:positive regulation of epithelial cell proliferation involved in lung morphogenesis; IMP:MGI.
GO; GO:0010628; P:positive regulation of gene expression; IMP:UniProtKB.
GO; GO:0040018; P:positive regulation of multicellular organism growth; IMP:MGI.
GO; GO:2001022; P:positive regulation of response to DNA damage stimulus; ISS:UniProtKB.
GO; GO:2000648; P:positive regulation of stem cell proliferation; IMP:MGI.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:MGI.
GO; GO:2000679; P:positive regulation of transcription regulatory region DNA binding; ISS:UniProtKB.
GO; GO:0010564; P:regulation of cell cycle process; IDA:UniProtKB.
GO; GO:2001038; P:regulation of cellular response to drug; ISS:UniProtKB.
GO; GO:0060123; P:regulation of growth hormone secretion; IMP:MGI.
GO; GO:0090276; P:regulation of peptide hormone secretion; IMP:MGI.
GO; GO:2000036; P:regulation of stem cell population maintenance; ISS:UniProtKB.
GO; GO:0006355; P:regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0035986; P:senescence-associated heterochromatin focus assembly; ISS:UniProtKB.
GO; GO:0035019; P:somatic stem cell population maintenance; IMP:MGI.
GO; GO:0007283; P:spermatogenesis; IMP:MGI.
InterPro; IPR017956; AT_hook_DNA-bd_motif.
InterPro; IPR000116; HMGA.
Pfam; PF02178; AT_hook; 3.
PRINTS; PR00929; ATHOOK.
PRINTS; PR00930; HIGHMOBLTYIY.
SMART; SM00384; AT_hook; 3.
1: Evidence at protein level;
Acetylation; Cell cycle; Cell division; Complete proteome;
DNA condensation; DNA-binding; Growth regulation; Meiosis; Mitosis;
Nucleus; Phosphoprotein; Reference proteome; Repeat; Transcription;
Transcription regulation.
INIT_MET 1 1 Removed. {ECO:0000250|UniProtKB:P52926}.
CHAIN 2 108 High mobility group protein HMGI-C.
/FTId=PRO_0000206712.
DNA_BIND 24 34 A.T hook 1.
DNA_BIND 44 54 A.T hook 2.
DNA_BIND 71 82 A.T hook 3.
REGION 44 63 Interaction with E4F1. {ECO:0000250}.
MOD_RES 2 2 N-acetylserine.
{ECO:0000250|UniProtKB:P52926}.
MOD_RES 40 40 Phosphothreonine.
{ECO:0000250|UniProtKB:P52926}.
MOD_RES 44 44 Phosphoserine.
{ECO:0000250|UniProtKB:P52926}.
MOD_RES 100 100 Phosphoserine.
{ECO:0000244|PubMed:21183079}.
MOD_RES 104 104 Phosphoserine.
{ECO:0000244|PubMed:19131326,
ECO:0000244|PubMed:21183079}.
SEQUENCE 108 AA; 11819 MW; 40A3E38F62268C09 CRC64;
MSARGEGAGQ PSTSAQGQPA APVPQKRGRG RPRKQQQEPT CEPSPKRPRG RPKGSKNKSP
SKAAQKKAET IGEKRPRGRP RKWPQQVVQK KPAQETEETS SQESAEED


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