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High-affinity nitrate transporter 2.1 (AtNRT2:1) (Protein ACH1) (Protein LATERAL ROOT INITIATION 1)

 NRT21_ARATH             Reviewed;         530 AA.
O82811;
02-NOV-2010, integrated into UniProtKB/Swiss-Prot.
01-NOV-1998, sequence version 1.
23-MAY-2018, entry version 109.
RecName: Full=High-affinity nitrate transporter 2.1;
Short=AtNRT2:1;
AltName: Full=Protein ACH1;
AltName: Full=Protein LATERAL ROOT INITIATION 1;
Name=NRT2.1; Synonyms=ACH1, LIN1, NRT2;1AT;
OrderedLocusNames=At1g08090; ORFNames=T6D22.17;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Landsberg erecta;
Zhang H., Forde B.G.;
"Cloning and characterisation of the NRT2 high affinity nitrate
transporters from Arabidopsis.";
Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [MRNA], INDUCTION BY NITRATE AND AMMONIUM, AND
TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
PubMed=10205909; DOI=10.1046/j.1365-313X.1999.00396.x;
Zhuo D., Okamoto M., Vidmar J.J., Glass A.D.;
"Regulation of a putative high-affinity nitrate transporter (Nrt2;1At)
in roots of Arabidopsis thaliana.";
Plant J. 17:563-568(1999).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Landsberg erecta;
PubMed=10066586; DOI=10.1016/S1369-5266(98)80110-6;
Daniel-Vedele F., Filleur S., Caboche M.;
"Nitrate transport: a key step in nitrate assimilation.";
Curr. Opin. Plant Biol. 1:235-239(1998).
[4]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Landsberg erecta;
PubMed=9951738; DOI=10.1007/s004250050505;
Filleur S., Daniel-Vedele F.;
"Expression analysis of a high-affinity nitrate transporter isolated
from Arabidopsis thaliana by differential display.";
Planta 207:461-469(1999).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[6]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[7]
INDUCTION BY NITRATE AND LIGHT.
PubMed=10417701; DOI=10.1046/j.1365-313X.1999.00480.x;
Lejay L., Tillard P., Lepetit M., Olive F., Filleur S.,
Daniel-Vedele F., Gojon A.;
"Molecular and functional regulation of two NO3- uptake systems by
N- and C-status of Arabidopsis plants.";
Plant J. 18:509-519(1999).
[8]
DISRUPTION PHENOTYPE.
PubMed=11165253; DOI=10.1016/S0014-5793(01)02096-8;
Filleur S., Dorbe M.F., Cerezo M., Orsel M., Granier F., Gojon A.,
Daniel-Vedele F.;
"An arabidopsis T-DNA mutant affected in Nrt2 genes is impaired in
nitrate uptake.";
FEBS Lett. 489:220-224(2001).
[9]
FUNCTION.
PubMed=11553754; DOI=10.1104/pp.127.1.262;
Cerezo M., Tillard P., Filleur S., Munos S., Daniel-Vedele F.,
Gojon A.;
"Major alterations of the regulation of root NO(3)(-) uptake are
associated with the mutation of Nrt2.1 and Nrt2.2 genes in
Arabidopsis.";
Plant Physiol. 127:262-271(2001).
[10]
GENE FAMILY.
PubMed=11912225; DOI=10.1093/jexbot/53.370.825;
Orsel M., Filleur S., Fraisier V., Daniel-Vedele F.;
"Nitrate transport in plants: which gene and which control?";
J. Exp. Bot. 53:825-833(2002).
[11]
INDUCTION BY NITRATE, AND GENE FAMILY.
PubMed=12668777; DOI=10.1093/pcp/pcg036;
Okamoto M., Vidmar J.J., Glass A.D.;
"Regulation of NRT1 and NRT2 gene families of Arabidopsis thaliana:
responses to nitrate provision.";
Plant Cell Physiol. 44:304-317(2003).
[12]
FUNCTION, AND INDUCTION BY NITRATE.
PubMed=15107992; DOI=10.1007/s00425-004-1266-x;
Orsel M., Eulenburg K., Krapp A., Daniel-Vedele F.;
"Disruption of the nitrate transporter genes AtNRT2.1 and AtNRT2.2
restricts growth at low external nitrate concentration.";
Planta 219:714-721(2004).
[13]
FUNCTION, MUTAGENESIS OF GLY-119, AND DISRUPTION PHENOTYPE.
PubMed=16157886; DOI=10.1073/pnas.0504219102;
Little D.Y., Rao H., Oliva S., Daniel-Vedele F., Krapp A.,
Malamy J.E.;
"The putative high-affinity nitrate transporter NRT2.1 represses
lateral root initiation in response to nutritional cues.";
Proc. Natl. Acad. Sci. U.S.A. 102:13693-13698(2005).
[14]
FUNCTION, AND TISSUE SPECIFICITY.
PubMed=16415211; DOI=10.1104/pp.105.075721;
Remans T., Nacry P., Pervent M., Girin T., Tillard P., Lepetit M.,
Gojon A.;
"A central role for the nitrate transporter NRT2.1 in the integrated
morphological and physiological responses of the root system to
nitrogen limitation in Arabidopsis.";
Plant Physiol. 140:909-921(2006).
[15]
INDUCTION BY NITRATE.
PubMed=16415212; DOI=10.1104/pp.105.074385;
Okamoto M., Kumar A., Li W., Wang Y., Siddiqi M.Y., Crawford N.M.,
Glass A.D.;
"High-affinity nitrate transport in roots of Arabidopsis depends on
expression of the NAR2-like gene AtNRT3.1.";
Plant Physiol. 140:1036-1046(2006).
[16]
INTERACTION WITH NRT3.1, AND INDUCTION.
PubMed=17012411; DOI=10.1104/pp.106.085209;
Orsel M., Chopin F., Leleu O., Smith S.J., Krapp A., Daniel-Vedele F.,
Miller A.J.;
"Characterization of a two-component high-affinity nitrate uptake
system in Arabidopsis. Physiology and protein-protein interaction.";
Plant Physiol. 142:1304-1317(2006).
[17]
GENE FAMILY.
PubMed=17481610; DOI=10.1016/j.febslet.2007.04.047;
Tsay Y.F., Chiu C.C., Tsai C.B., Ho C.H., Hsu P.K.;
"Nitrate transporters and peptide transporters.";
FEBS Lett. 581:2290-2300(2007).
[18]
SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION BY LIGHT AND
SUCROSE.
PubMed=17573350; DOI=10.1074/jbc.M700901200;
Wirth J., Chopin F., Santoni V., Viennois G., Tillard P., Krapp A.,
Lejay L., Daniel-Vedele F., Gojon A.;
"Regulation of root nitrate uptake at the NRT2.1 protein level in
Arabidopsis thaliana.";
J. Biol. Chem. 282:23541-23552(2007).
[19]
TISSUE SPECIFICITY.
PubMed=17540716; DOI=10.1105/tpc.107.050542;
Chopin F., Orsel M., Dorbe M.F., Chardon F., Truong H.N., Miller A.J.,
Krapp A., Daniel-Vedele F.;
"The Arabidopsis ATNRT2.7 nitrate transporter controls nitrate content
in seeds.";
Plant Cell 19:1590-1602(2007).
[20]
INDUCTION BY NITRATE AND SUCROSE.
PubMed=17897408; DOI=10.1111/j.1365-3040.2007.01712.x;
Girin T., Lejay L., Wirth J., Widiez T., Palenchar P.M., Nazoa P.,
Touraine B., Gojon A., Lepetit M.;
"Identification of a 150 bp cis-acting element of the AtNRT2.1
promoter involved in the regulation of gene expression by the N and C
status of the plant.";
Plant Cell Environ. 30:1366-1380(2007).
[21]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=17085507; DOI=10.1104/pp.106.091223;
Li W., Wang Y., Okamoto M., Crawford N.M., Siddiqi M.Y., Glass A.D.;
"Dissection of the AtNRT2.1:AtNRT2.2 inducible high-affinity nitrate
transporter gene cluster.";
Plant Physiol. 143:425-433(2007).
[22]
SUBCELLULAR LOCATION.
PubMed=17583518; DOI=10.1016/j.plaphy.2007.04.007;
Chopin F., Wirth J., Dorbe M.F., Lejay L., Krapp A., Gojon A.,
Daniel-Vedele F.;
"The Arabidopsis nitrate transporter AtNRT2.1 is targeted to the root
plasma membrane.";
Plant Physiol. Biochem. 45:630-635(2007).
[23]
FUNCTION, AND SUBCELLULAR LOCATION.
PubMed=19704673; DOI=10.4161/psb.2.4.3870;
Orsel M., Chopin F., Leleu O., Smith S.J., Krapp A., Daniel-Vedele F.,
Miller A.J.;
"Nitrate signaling and the two component high affinity uptake system
in Arabidopsis.";
Plant Signal. Behav. 2:260-262(2007).
[24]
SUBCELLULAR LOCATION, SUBUNIT, AND INTERACTION WITH NRT3.1.
PubMed=20561257; DOI=10.1111/j.1365-313X.2010.04278.x;
Yong Z., Kotur Z., Glass A.D.;
"Characterization of an intact two-component high-affinity nitrate
transporter from Arabidopsis roots.";
Plant J. 63:739-748(2010).
-!- FUNCTION: Involved in nitrate transport, but does not seem to be
able to mediate transport by its own. Acts as a dual component
transporter with NTR3.1. Acts as a repressor of lateral root
initiation under high sucrose/low nitrate conditions.
{ECO:0000269|PubMed:11553754, ECO:0000269|PubMed:15107992,
ECO:0000269|PubMed:16157886, ECO:0000269|PubMed:16415211,
ECO:0000269|PubMed:17085507, ECO:0000269|PubMed:19704673}.
-!- SUBUNIT: Monomer. Heterotetramer composed of two NRT2.1 and two
NRT3.1. Interacts with NRT3.1. {ECO:0000269|PubMed:17012411,
ECO:0000269|PubMed:20561257}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:17573350,
ECO:0000269|PubMed:17583518, ECO:0000269|PubMed:19704673,
ECO:0000269|PubMed:20561257}; Multi-pass membrane protein
{ECO:0000269|PubMed:17573350, ECO:0000269|PubMed:17583518,
ECO:0000269|PubMed:19704673, ECO:0000269|PubMed:20561257}.
-!- TISSUE SPECIFICITY: Root cortical and epidermal cells. Not
expressed in new lateral root Primordia. Detected in shoots.
{ECO:0000269|PubMed:10205909, ECO:0000269|PubMed:16415211,
ECO:0000269|PubMed:17540716, ECO:0000269|PubMed:17573350}.
-!- INDUCTION: Up-regulated at transcript level by light and sucrose,
and transiently by nitrate, but no changes at protein level. Down-
regulated by ammonium, amino acids and N-metabolites resulting
from nitrate reduction. Induced by sudden N starvation and by
growth on low nitrate concentration. Circadian-regulation.
Expression increases during the light phase and decreases during
the dark phase. {ECO:0000269|PubMed:10205909,
ECO:0000269|PubMed:10417701, ECO:0000269|PubMed:12668777,
ECO:0000269|PubMed:15107992, ECO:0000269|PubMed:16415212,
ECO:0000269|PubMed:17012411, ECO:0000269|PubMed:17573350,
ECO:0000269|PubMed:17897408}.
-!- PTM: Might be subject to partial proteolysis at the C-terminus.
-!- DISRUPTION PHENOTYPE: Impaired in the high-affinity nitrate
transport. Reduced growth on low-nitrate media. Reduced nitrate
uptake and increased lateral root initiation.
{ECO:0000269|PubMed:11165253, ECO:0000269|PubMed:16157886,
ECO:0000269|PubMed:17085507}.
-!- SIMILARITY: Belongs to the major facilitator superfamily.
Nitrate/nitrite porter (TC 2.A.1.8) family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; Z97058; CAB09794.1; -; mRNA.
EMBL; AF019748; AAC35883.1; -; mRNA.
EMBL; AF093754; AAC64170.1; -; mRNA.
EMBL; AC026875; AAF79826.1; -; Genomic_DNA.
EMBL; CP002684; AEE28241.1; -; Genomic_DNA.
PIR; T51836; T51836.
RefSeq; NP_172288.1; NM_100684.3.
UniGene; At.5407; -.
ProteinModelPortal; O82811; -.
BioGrid; 22568; 1.
IntAct; O82811; 1.
STRING; 3702.AT1G08090.1; -.
TCDB; 2.A.1.8.12; the major facilitator superfamily (mfs).
iPTMnet; O82811; -.
PaxDb; O82811; -.
EnsemblPlants; AT1G08090.1; AT1G08090.1; AT1G08090.
GeneID; 837327; -.
Gramene; AT1G08090.1; AT1G08090.1; AT1G08090.
KEGG; ath:AT1G08090; -.
Araport; AT1G08090; -.
TAIR; locus:2205190; AT1G08090.
eggNOG; ENOG410IE1F; Eukaryota.
eggNOG; COG2223; LUCA.
HOGENOM; HOG000196276; -.
InParanoid; O82811; -.
KO; K02575; -.
OMA; SEWSHEE; -.
OrthoDB; EOG093607XF; -.
PhylomeDB; O82811; -.
PRO; PR:O82811; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; O82811; differential.
Genevisible; O82811; AT.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; ISS:TAIR.
GO; GO:0009705; C:plant-type vacuole membrane; IBA:GO_Central.
GO; GO:0005886; C:plasma membrane; IDA:TAIR.
GO; GO:0015112; F:nitrate transmembrane transporter activity; TAS:TAIR.
GO; GO:0071249; P:cellular response to nitrate; IBA:GO_Central.
GO; GO:0048527; P:lateral root development; IMP:TAIR.
GO; GO:0042128; P:nitrate assimilation; IEA:UniProtKB-KW.
GO; GO:0015706; P:nitrate transport; IMP:CACAO.
GO; GO:0010167; P:response to nitrate; IEP:TAIR.
CDD; cd06174; MFS; 1.
InterPro; IPR011701; MFS.
InterPro; IPR020846; MFS_dom.
InterPro; IPR036259; MFS_trans_sf.
Pfam; PF07690; MFS_1; 1.
SUPFAM; SSF103473; SSF103473; 1.
1: Evidence at protein level;
Cell membrane; Complete proteome; Membrane; Nitrate assimilation;
Phosphoprotein; Reference proteome; Transmembrane;
Transmembrane helix.
CHAIN 1 530 High-affinity nitrate transporter 2.1.
/FTId=PRO_0000400098.
TRANSMEM 69 89 Helical. {ECO:0000255}.
TRANSMEM 105 125 Helical. {ECO:0000255}.
TRANSMEM 129 149 Helical. {ECO:0000255}.
TRANSMEM 151 171 Helical. {ECO:0000255}.
TRANSMEM 193 213 Helical. {ECO:0000255}.
TRANSMEM 226 246 Helical. {ECO:0000255}.
TRANSMEM 271 290 Helical. {ECO:0000255}.
TRANSMEM 310 330 Helical. {ECO:0000255}.
TRANSMEM 352 372 Helical. {ECO:0000255}.
TRANSMEM 383 403 Helical. {ECO:0000255}.
TRANSMEM 410 430 Helical. {ECO:0000255}.
TRANSMEM 441 461 Helical. {ECO:0000255}.
MOD_RES 521 521 Phosphothreonine.
{ECO:0000250|UniProtKB:Q9LXH0}.
MUTAGEN 119 119 G->R: In lin1; reduced nitrate uptake and
increased lateral root initiation.
{ECO:0000269|PubMed:16157886}.
SEQUENCE 530 AA; 57710 MW; A40F435039635090 CRC64;
MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP
HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI GNAGVASVSG SIFSRLVMGA
VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN
SQIIGLVNGT AAGWGNMGGG ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI
LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT
AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV PFVSRRALGI ISGLTGAGGN
FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE
AHYYGSEWNE QEKQKNMHQG SLRFAENAKS EGGRRVRSAA TPPENTPNNV


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