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Histidine kinase CKI1 (EC 2.7.13.3) (Protein CYTOKININ-INDEPENDENT 1)

 CKI1_ARATH              Reviewed;        1122 AA.
O22267; A5YY37;
05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
01-JAN-1998, sequence version 1.
23-MAY-2018, entry version 137.
RecName: Full=Histidine kinase CKI1;
EC=2.7.13.3;
AltName: Full=Protein CYTOKININ-INDEPENDENT 1;
Name=CKI1; OrderedLocusNames=At2g47430; ORFNames=T30B22.27;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND FUNCTION.
STRAIN=cv. Wassilewskija; TISSUE=Shoot;
PubMed=8875940; DOI=10.1126/science.274.5289.982;
Kakimoto T.;
"CKI1, a histidine kinase homolog implicated in cytokinin signal
transduction.";
Science 274:982-985(1996).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 740-1003.
STRAIN=cv. Ag-0, cv. An-1, cv. Br-0, cv. C24, cv. Ct-1, cv. Cvi-1,
cv. Edi-0, cv. Ga-0, cv. Kas-2, cv. Kin-0, cv. Landsberg erecta,
cv. Lz-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0, cv. Se-0,
cv. Sorbo, cv. Tsu-1, cv. Van-0, cv. Wa-1, and cv. Wassilewskija;
PubMed=17435248; DOI=10.1534/genetics.107.071928;
Ehrenreich I.M., Stafford P.A., Purugganan M.D.;
"The genetic architecture of shoot branching in Arabidopsis thaliana:
a comparative assessment of candidate gene associations vs.
quantitative trait locus mapping.";
Genetics 176:1223-1236(2007).
[5]
FUNCTION, AND MUTAGENESIS OF ASP-1050.
PubMed=10610126; DOI=10.1271/bbb.63.1627;
Nakamura A., Kakimoto T., Imamura A., Suzuki T., Ueguchi C.,
Mizuno T.;
"Biochemical characterization of a putative cytokinin-responsive His-
kinase, CKI1, from Arabidopsis thaliana.";
Biosci. Biotechnol. Biochem. 63:1627-1630(1999).
[6]
INTERACTION WITH AHP2 AND AHP3.
PubMed=10930573; DOI=10.1016/S0014-5793(00)01860-3;
Urao T., Miyata S., Yamaguchi-Shinozaki K., Shinozaki K.;
"Possible His to Asp phosphorelay signaling in an Arabidopsis two-
component system.";
FEBS Lett. 478:227-232(2000).
[7]
FUNCTION, DISRUPTION PHENOTYPE, DEVELOPMENTAL STAGE, AND TISSUE
SPECIFICITY.
PubMed=12426401; DOI=10.1073/pnas.232580499;
Pischke M.S., Jones L.G., Otsuga D., Fernandez D.E., Drews G.N.,
Sussman M.R.;
"An Arabidopsis histidine kinase is essential for megagametogenesis.";
Proc. Natl. Acad. Sci. U.S.A. 99:15800-15805(2002).
[8]
FUNCTION, DISRUPTION PHENOTYPE, MUTAGENESIS OF 150-ARG--TYR-153, AND
DEVELOPMENTAL STAGE.
PubMed=12774227; DOI=10.1007/s00438-003-0858-7;
Hejatko J., Pernisova M., Eneva T., Palme K., Brzobohaty B.;
"The putative sensor histidine kinase CKI1 is involved in female
gametophyte development in Arabidopsis.";
Mol. Genet. Genomics 269:443-453(2003).
[9]
FUNCTION.
PubMed=18077346; DOI=10.1073/pnas.0706547105;
Tran L.S., Urao T., Qin F., Maruyama K., Kakimoto T., Shinozaki K.,
Yamaguchi-Shinozaki K.;
"Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine
kinases in response to abscisic acid, drought, and salt stress in
Arabidopsis.";
Proc. Natl. Acad. Sci. U.S.A. 104:20623-20628(2007).
[10]
FUNCTION, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, HOMODIMERIZATION,
AND MUTAGENESIS OF HIS-405.
PubMed=19622803; DOI=10.1105/tpc.109.066696;
Hejatko J., Ryu H., Kim G.-T., Dobesova R., Choi S., Choi S.M.,
Soucek P., Horak J., Pekarova B., Palme K., Brzobohaty B., Hwang I.;
"The histidine kinases CYTOKININ-INDEPENDENT1 and ARABIDOPSIS
HISTIDINE KINASE2 and 3 regulate vascular tissue development in
Arabidopsis shoots.";
Plant Cell 21:2008-2021(2009).
[11]
FUNCTION, DISRUPTION PHENOTYPE, AND TISSUE SPECIFICITY.
PubMed=20363773; DOI=10.1105/tpc.108.065128;
Deng Y., Dong H., Mu J., Ren B., Zheng B., Ji Z., Yang W.-C.,
Liang Y., Zuo J.;
"Arabidopsis histidine kinase CKI1 acts upstream of histidine
phosphotransfer proteins to regulate female gametophyte development
and vegetative growth.";
Plant Cell 22:1232-1248(2010).
-!- FUNCTION: Essential protein. Functions as a histidine kinase and
transmits the stress signal to a downstream MAPK cascade. This
protein undergoes an ATP-dependent autophosphorylation at a
conserved histidine residue in the kinase core, and a phosphoryl
group is then transferred to a conserved aspartate residue in the
receiver domain. Required for the development of megagametophyte
in female gametophyte (embryo sac) independently of cytokinin.
Contributes to vascular bundle formation and secondary growth in a
cytokinin-independent manner, probably by promoting the
maintenance of mitotic activity and/or identity of procambial
cells. Seems to influence and promote the cytokinin signaling
pathway. {ECO:0000269|PubMed:10610126,
ECO:0000269|PubMed:12426401, ECO:0000269|PubMed:12774227,
ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:19622803,
ECO:0000269|PubMed:20363773, ECO:0000269|PubMed:8875940}.
-!- CATALYTIC ACTIVITY: ATP + protein L-histidine = ADP + protein N-
phospho-L-histidine.
-!- SUBUNIT: Homodimer. Interacts with AHP2 and AHP3.
{ECO:0000269|PubMed:10930573}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:19622803};
Multi-pass membrane protein {ECO:0000269|PubMed:19622803}.
-!- TISSUE SPECIFICITY: Expressed in vascular tissues of inflorescence
stems and floral organs, especially in procambium cells, and in
siliques. {ECO:0000269|PubMed:12426401,
ECO:0000269|PubMed:19622803, ECO:0000269|PubMed:20363773}.
-!- DEVELOPMENTAL STAGE: Present at low levels in developing ovules.
Within mature female gametophytes, high levels in the central cell
nucleus and weak levels in the egg cell nucleus. In fertilized
ovules, expressed in the endosperm nuclei during 2 days after
pollination. {ECO:0000269|PubMed:12426401,
ECO:0000269|PubMed:12774227}.
-!- DISRUPTION PHENOTYPE: Cannot be transmitted through the female
germ line. Impaired megagametogenesis visible from the four-
nucleate stage, with two normal nuclei and two degenerated nuclei,
leading to female sterility. Normal response to cytokinins.
{ECO:0000269|PubMed:12426401, ECO:0000269|PubMed:12774227,
ECO:0000269|PubMed:20363773}.
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EMBL; D87545; BAA13416.1; -; mRNA.
EMBL; AC002535; AAC62867.1; -; Genomic_DNA.
EMBL; CP002685; AEC10840.1; -; Genomic_DNA.
EMBL; EF598269; ABQ85241.1; -; Genomic_DNA.
EMBL; EF598270; ABQ85242.1; -; Genomic_DNA.
EMBL; EF598271; ABQ85243.1; -; Genomic_DNA.
EMBL; EF598272; ABQ85244.1; -; Genomic_DNA.
EMBL; EF598273; ABQ85245.1; -; Genomic_DNA.
EMBL; EF598274; ABQ85246.1; -; Genomic_DNA.
EMBL; EF598275; ABQ85247.1; -; Genomic_DNA.
EMBL; EF598276; ABQ85248.1; -; Genomic_DNA.
EMBL; EF598277; ABQ85249.1; -; Genomic_DNA.
EMBL; EF598278; ABQ85250.1; -; Genomic_DNA.
EMBL; EF598279; ABQ85251.1; -; Genomic_DNA.
EMBL; EF598280; ABQ85252.1; -; Genomic_DNA.
EMBL; EF598281; ABQ85253.1; -; Genomic_DNA.
EMBL; EF598282; ABQ85254.1; -; Genomic_DNA.
EMBL; EF598283; ABQ85255.1; -; Genomic_DNA.
EMBL; EF598284; ABQ85256.1; -; Genomic_DNA.
EMBL; EF598285; ABQ85257.1; -; Genomic_DNA.
EMBL; EF598286; ABQ85258.1; -; Genomic_DNA.
EMBL; EF598287; ABQ85259.1; -; Genomic_DNA.
EMBL; EF598288; ABQ85260.1; -; Genomic_DNA.
EMBL; EF598289; ABQ85261.1; -; Genomic_DNA.
EMBL; EF598290; ABQ85262.1; -; Genomic_DNA.
EMBL; EF598291; ABQ85263.1; -; Genomic_DNA.
PIR; T00441; T00441.
RefSeq; NP_182265.1; NM_130311.2.
UniGene; At.341; -.
PDB; 3MM4; X-ray; 2.00 A; A=944-1122.
PDB; 3MMN; X-ray; 2.20 A; A=944-1122.
PDB; 5LNM; X-ray; 1.95 A; A=944-1122.
PDB; 5LNN; X-ray; 1.60 A; A=944-1122.
PDB; 5N2N; X-ray; 2.05 A; A=944-1122.
PDBsum; 3MM4; -.
PDBsum; 3MMN; -.
PDBsum; 5LNM; -.
PDBsum; 5LNN; -.
PDBsum; 5N2N; -.
ProteinModelPortal; O22267; -.
SMR; O22267; -.
BioGrid; 4691; 5.
IntAct; O22267; 3.
STRING; 3702.AT2G47430.1; -.
PaxDb; O22267; -.
PRIDE; O22267; -.
EnsemblPlants; AT2G47430.1; AT2G47430.1; AT2G47430.
GeneID; 819356; -.
Gramene; AT2G47430.1; AT2G47430.1; AT2G47430.
KEGG; ath:AT2G47430; -.
Araport; AT2G47430; -.
TAIR; locus:2061971; AT2G47430.
eggNOG; ENOG410IRDA; Eukaryota.
eggNOG; ENOG410XT1K; LUCA.
HOGENOM; HOG000114067; -.
InParanoid; O22267; -.
OMA; FHAYSTI; -.
OrthoDB; EOG093604SL; -.
PhylomeDB; O22267; -.
PRO; PR:O22267; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; O22267; differential.
Genevisible; O22267; AT.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005622; C:intracellular; IEA:GOC.
GO; GO:0005886; C:plasma membrane; IDA:UniProtKB.
GO; GO:0009506; C:plasmodesma; IDA:TAIR.
GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
GO; GO:0004673; F:protein histidine kinase activity; IDA:UniProtKB.
GO; GO:0042803; F:protein homodimerization activity; IDA:UniProtKB.
GO; GO:0009736; P:cytokinin-activated signaling pathway; TAS:TAIR.
GO; GO:0009553; P:embryo sac development; IMP:TAIR.
GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro.
GO; GO:0010087; P:phloem or xylem histogenesis; IMP:UniProtKB.
GO; GO:0080117; P:secondary growth; IMP:UniProtKB.
CDD; cd00075; HATPase_c; 1.
CDD; cd00082; HisKA; 1.
CDD; cd06223; PRTases_typeI; 1.
CDD; cd00156; REC; 1.
InterPro; IPR011006; CheY-like_superfamily.
InterPro; IPR003594; HATPase_C.
InterPro; IPR036890; HATPase_C_sf.
InterPro; IPR005467; His_kinase_dom.
InterPro; IPR003661; HisK_dim/P.
InterPro; IPR036097; HisK_dim/P_sf.
InterPro; IPR000836; PRibTrfase_dom.
InterPro; IPR004358; Sig_transdc_His_kin-like_C.
InterPro; IPR001789; Sig_transdc_resp-reg_receiver.
Pfam; PF02518; HATPase_c; 1.
Pfam; PF00512; HisKA; 1.
Pfam; PF00072; Response_reg; 1.
PRINTS; PR00344; BCTRLSENSOR.
SMART; SM00387; HATPase_c; 1.
SMART; SM00388; HisKA; 1.
SMART; SM00448; REC; 1.
SUPFAM; SSF47384; SSF47384; 1.
SUPFAM; SSF52172; SSF52172; 1.
SUPFAM; SSF55874; SSF55874; 2.
PROSITE; PS50109; HIS_KIN; 1.
PROSITE; PS50110; RESPONSE_REGULATORY; 1.
1: Evidence at protein level;
3D-structure; Cell membrane; Complete proteome; Developmental protein;
Kinase; Membrane; Phosphoprotein; Reference proteome; Transferase;
Transmembrane; Transmembrane helix.
CHAIN 1 1122 Histidine kinase CKI1.
/FTId=PRO_0000398591.
TOPO_DOM 1 12 Cytoplasmic. {ECO:0000255}.
TRANSMEM 13 33 Helical. {ECO:0000255}.
TOPO_DOM 34 345 Extracellular. {ECO:0000255}.
TRANSMEM 346 366 Helical. {ECO:0000255}.
TOPO_DOM 367 1122 Cytoplasmic. {ECO:0000255}.
DOMAIN 402 671 Histidine kinase. {ECO:0000255|PROSITE-
ProRule:PRU00107}.
DOMAIN 987 1120 Response regulatory.
{ECO:0000255|PROSITE-ProRule:PRU00169}.
MOD_RES 405 405 Phosphohistidine; by autocatalysis.
{ECO:0000255|PROSITE-ProRule:PRU00107}.
MOD_RES 1050 1050 4-aspartylphosphate.
{ECO:0000255|PROSITE-ProRule:PRU00169}.
MUTAGEN 150 153 RGDY->GT: In cki1-r; normal phenotype
rescued from En-1 insertional disruption
phenotype. {ECO:0000269|PubMed:12774227}.
MUTAGEN 405 405 H->Q: Dysfunction of the two-component
signaling pathway leading to defects in
procambial cell maintenance and
proliferation, as well as the absence of
secondary growth.
{ECO:0000269|PubMed:19622803}.
MUTAGEN 1050 1050 D->Q,E: Loss of histidine kinase
activity. {ECO:0000269|PubMed:10610126}.
TURN 980 985 {ECO:0000244|PDB:5LNN}.
STRAND 987 991 {ECO:0000244|PDB:5LNN}.
HELIX 995 1007 {ECO:0000244|PDB:5LNN}.
STRAND 1011 1018 {ECO:0000244|PDB:5LNN}.
HELIX 1019 1036 {ECO:0000244|PDB:5LNN}.
STRAND 1045 1051 {ECO:0000244|PDB:5LNN}.
STRAND 1054 1056 {ECO:0000244|PDB:5LNN}.
HELIX 1058 1070 {ECO:0000244|PDB:5LNN}.
TURN 1071 1073 {ECO:0000244|PDB:5LNN}.
STRAND 1078 1084 {ECO:0000244|PDB:5LNN}.
HELIX 1088 1097 {ECO:0000244|PDB:5LNN}.
STRAND 1101 1104 {ECO:0000244|PDB:5LNN}.
HELIX 1110 1119 {ECO:0000244|PDB:5LNN}.
SEQUENCE 1122 AA; 125033 MW; C6833F731DA84781 CRC64;
MMVKVTKLVA SRPIVVFCVL AFLVVVFECI WISNWRTTTE NLVKEVASFT EDLRTSLVSE
IENIGKFTYA KTNLSTIGLA RVIDSYITNN DTGFTEIQTQ IAPLLFVAYS TILQVSQVSY
ISRDGLMFSY IAESNTSVAV FANSSSNSSR GDYTWYTQTV DQLTGRLNGN STKSQSLDVT
HTDWFQAAQS NNYTTAFVGT SLGGEDNETL IQSVVSLYSK KGLVSLGFPV KTLTEVLNSL
NLHGEELYMW TKDGTVLVRE GSLNDSFFIS NGSICFGRES NSLWSQCIPE NCSSSGYEVE
IKRLRYQAFC SVIEVSGVPL RYTLMFPNKG GATRIKHQAE KAKYQLIVVM IFLGFGWPVW
FVWFMMQATR REMHMRATLI NQMEATQQAE RKSMNKSQAF ANASHDIRGA LAGMKGLIDI
CRDGVKPGSD VDTTLNQVNV CAKDLVALLN SVLDMSKIES GKMQLVEEDF NLSKLLEDVI
DFYHPVAMKK GVDVVLDPHD GSVFKFSNVR GDSGRLKQIL NNLVSNAVKF TVDGHIAVRA
WAQRPGSNSS VVLASYPKGV SKFVKSMFCK NKEESSTYET EISNSIRNNA NTMEFVFEVD
DTGKGIPMEM RKSVFENYVQ VRETAQGHQG TGLGLGIVQS LVRLMGGEIR ITDKAMGEKG
TCFQFNVLLT TLESPPVSDM KVRQEIEAGG DYVSTPNLGL TINTSLGGSM NIRNLSPRFN
NCLSSSPKQE GSRVVLLLKN EERRRVTEKY IKNLGIKVTV VEKWEHLSYA LERLFGFSPQ
SSMGRAECSL SCPSSRELPF IGMDGIDSRS QLPKRRSISF SAVVLLVIDA KTGPFFELCD
IVKQFRRGLP HGISCKVVWL NESSTRVSER GDISCSRPLH GSRLMEVLKM LPEFGGTVLK
EPPTELQRES LLRHSFVAER SPKHKVQEEG PSSMFNKKLG KRIMASTDSE SETRVKSVRT
GRKPIGNPED EQETSKPSDD EFLRGKRVLV VDDNFISRKV ATGKLKKMGV SEVEQCDSGK
EALRLVTEGL TQREEQGSVD KLPFDYIFMD CQMPEMDGYE ATREIRKVEK SYGVRTPIIA
VSGHDPGSEE ARETIQAGMD AFLDKSLNQL ANVIREIESK RH


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