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Histone-lysine N-methyltransferase TRX1 (OsTrx1) (EC 2.1.1.43) (Protein SET DOMAIN GROUP 723) (SET family protein 33) (OsSET33)

 TRX1_ORYSJ              Reviewed;        1022 AA.
Q6K431; Q6K430;
05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
05-JUL-2004, sequence version 1.
05-DEC-2018, entry version 138.
RecName: Full=Histone-lysine N-methyltransferase TRX1 {ECO:0000305};
Short=OsTrx1 {ECO:0000303|PubMed:24420930};
EC=2.1.1.43 {ECO:0000269|PubMed:24420930};
AltName: Full=Protein SET DOMAIN GROUP 723 {ECO:0000305};
AltName: Full=SET family protein 33 {ECO:0000305};
Short=OsSET33 {ECO:0000303|PubMed:23762371};
Name=TRX1 {ECO:0000303|PubMed:24420930};
Synonyms=SDG723 {ECO:0000305}, SET {ECO:0000303|PubMed:23762371};
OrderedLocusNames=Os09g0134500 {ECO:0000312|EMBL:BAF24549.1},
LOC_Os09g04890 {ECO:0000305};
ORFNames=P0406E03.49-1 {ECO:0000312|EMBL:BAD22318.1},
P0406E03.49-2 {ECO:0000312|EMBL:BAD22319.1};
Oryza sativa subsp. japonica (Rice).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
NCBI_TaxID=39947;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=16100779; DOI=10.1038/nature03895;
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[2]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=18089549; DOI=10.1093/nar/gkm978;
The rice annotation project (RAP);
"The rice annotation project database (RAP-DB): 2008 update.";
Nucleic Acids Res. 36:D1028-D1033(2008).
[3]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=24280374; DOI=10.1186/1939-8433-6-4;
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
Buell C.R., Matsumoto T.;
"Improvement of the Oryza sativa Nipponbare reference genome using
next generation sequence and optical map data.";
Rice 6:4-4(2013).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
STRAIN=cv. Nipponbare;
PubMed=12869764; DOI=10.1126/science.1081288;
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from
japonica rice.";
Science 301:376-379(2003).
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=23762371; DOI=10.1371/journal.pone.0065426;
Lu Z., Huang X., Ouyang Y., Yao J.;
"Genome-wide identification, phylogenetic and co-expression analysis
of OsSET gene family in rice.";
PLoS ONE 8:E65426-E65426(2013).
[6]
FUNCTION, CATALYTIC ACTIVITY, INTERACTION WITH EHD3, SUBCELLULAR
LOCATION, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
PubMed=24420930; DOI=10.1104/pp.113.228049;
Choi S.C., Lee S., Kim S.R., Lee Y.S., Liu C., Cao X., An G.;
"Trithorax group protein Oryza sativa Trithorax1 controls flowering
time in rice via interaction with early heading date3.";
Plant Physiol. 164:1326-1337(2014).
-!- FUNCTION: Possesses histone H3 methyltransferase activity in vitro
(PubMed:24420930). Methylates 'Lys-4' of histone H3. H3 'Lys-4'
methylation represents a specific tag for epigenetic
transcriptional activation. Functions as a receptor for the lipid
messenger phosphatidylinositol 5-phosphate (PI5P), which regulates
negatively its transcriptional activation activity (By
similarity). Involved in the regulation of flowering time and
floral induction under long day (LD) conditions. Acts as an
activator of flowering under LD conditions. May function through
binding to EHD3, a repressor of GHD7 (PubMed:24420930).
{ECO:0000250|UniProtKB:Q9C5X4, ECO:0000269|PubMed:24420930}.
-!- CATALYTIC ACTIVITY:
Reaction=L-lysyl-[histone] + S-adenosyl-L-methionine = H(+) +
N(6)-methyl-L-lysyl-[histone] + S-adenosyl-L-homocysteine;
Xref=Rhea:RHEA:10024, Rhea:RHEA-COMP:9845, Rhea:RHEA-COMP:9846,
ChEBI:CHEBI:15378, ChEBI:CHEBI:29969, ChEBI:CHEBI:57856,
ChEBI:CHEBI:59789, ChEBI:CHEBI:61929; EC=2.1.1.43;
Evidence={ECO:0000269|PubMed:24420930};
-!- SUBUNIT: Interacts with EHD3. {ECO:0000269|PubMed:24420930}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:24420930}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q6K431-1; Sequence=Displayed;
Name=2;
IsoId=Q6K431-2; Sequence=VSP_058520, VSP_058521;
Note=No experimental confirmation available. {ECO:0000305};
-!- TISSUE SPECIFICITY: Expressed in leaf blades and panicles.
{ECO:0000269|PubMed:24420930}.
-!- DISRUPTION PHENOTYPE: Late-flowering phenotype under long day (LD)
conditions. {ECO:0000269|PubMed:24420930}.
-!- SIMILARITY: Belongs to the class V-like SAM-binding
methyltransferase superfamily. Histone-lysine methyltransferase
family. TRX/MLL subfamily. {ECO:0000255|PROSITE-ProRule:PRU00190}.
-----------------------------------------------------------------------
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EMBL; AP005583; BAD22318.1; -; Genomic_DNA.
EMBL; AP005583; BAD22319.1; -; Genomic_DNA.
EMBL; AP008215; BAF24549.1; -; Genomic_DNA.
EMBL; AP014965; BAT06966.1; -; Genomic_DNA.
EMBL; AP014965; BAT06967.1; -; Genomic_DNA.
EMBL; AK065095; -; NOT_ANNOTATED_CDS; mRNA.
EMBL; AK074022; BAG93767.1; -; mRNA.
RefSeq; XP_015612383.1; XM_015756897.1. [Q6K431-1]
UniGene; Os.7059; -.
ProteinModelPortal; Q6K431; -.
SMR; Q6K431; -.
STRING; 39947.LOC_Os09g04890.1; -.
PaxDb; Q6K431; -.
EnsemblPlants; Os09t0134500-01; Os09t0134500-01; Os09g0134500. [Q6K431-2]
EnsemblPlants; Os09t0134500-02; Os09t0134500-02; Os09g0134500. [Q6K431-1]
GeneID; 4346464; -.
Gramene; Os09t0134500-01; Os09t0134500-01; Os09g0134500. [Q6K431-2]
Gramene; Os09t0134500-02; Os09t0134500-02; Os09g0134500. [Q6K431-1]
KEGG; osa:4346464; -.
eggNOG; KOG1080; Eukaryota.
eggNOG; COG2940; LUCA.
eggNOG; COG5141; LUCA.
HOGENOM; HOG000030783; -.
InParanoid; Q6K431; -.
OMA; DQRLPCY; -.
OrthoDB; EOG09360165; -.
Reactome; R-OSA-3214841; PKMTs methylate histone lysines.
Proteomes; UP000059680; Chromosome 9.
ExpressionAtlas; Q6K431; differential.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0042054; F:histone methyltransferase activity; IDA:UniProtKB.
GO; GO:0018024; F:histone-lysine N-methyltransferase activity; IEA:UniProtKB-EC.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
GO; GO:0035556; P:intracellular signal transduction; IEA:InterPro.
GO; GO:0048578; P:positive regulation of long-day photoperiodism, flowering; IMP:UniProtKB.
Gene3D; 3.30.40.10; -; 2.
InterPro; IPR034732; EPHD.
InterPro; IPR003889; FYrich_C.
InterPro; IPR003888; FYrich_N.
InterPro; IPR002219; PE/DAG-bd.
InterPro; IPR003616; Post-SET_dom.
InterPro; IPR000313; PWWP_dom.
InterPro; IPR001214; SET_dom.
InterPro; IPR002999; Tudor.
InterPro; IPR019786; Zinc_finger_PHD-type_CS.
InterPro; IPR011011; Znf_FYVE_PHD.
InterPro; IPR001965; Znf_PHD.
InterPro; IPR019787; Znf_PHD-finger.
InterPro; IPR013083; Znf_RING/FYVE/PHD.
Pfam; PF05965; FYRC; 1.
Pfam; PF05964; FYRN; 1.
Pfam; PF00855; PWWP; 1.
Pfam; PF00856; SET; 1.
SMART; SM00542; FYRC; 1.
SMART; SM00541; FYRN; 1.
SMART; SM00249; PHD; 2.
SMART; SM00508; PostSET; 1.
SMART; SM00293; PWWP; 1.
SMART; SM00317; SET; 1.
SMART; SM00333; TUDOR; 1.
SUPFAM; SSF57903; SSF57903; 1.
PROSITE; PS51543; FYRC; 1.
PROSITE; PS51542; FYRN; 1.
PROSITE; PS50868; POST_SET; 1.
PROSITE; PS50812; PWWP; 1.
PROSITE; PS50280; SET; 1.
PROSITE; PS50081; ZF_DAG_PE_2; 1.
PROSITE; PS01359; ZF_PHD_1; 1.
PROSITE; PS50016; ZF_PHD_2; 1.
1: Evidence at protein level;
Alternative splicing; Chromatin regulator; Complete proteome;
Flowering; Metal-binding; Methyltransferase; Nucleus;
Reference proteome; S-adenosyl-L-methionine; Transferase; Zinc;
Zinc-finger.
CHAIN 1 1022 Histone-lysine N-methyltransferase TRX1.
/FTId=PRO_0000437438.
DOMAIN 264 327 PWWP. {ECO:0000255|PROSITE-
ProRule:PRU00162}.
DOMAIN 402 461 FYR N-terminal. {ECO:0000255|PROSITE-
ProRule:PRU00875}.
DOMAIN 465 548 FYR C-terminal. {ECO:0000255|PROSITE-
ProRule:PRU00876}.
DOMAIN 861 979 SET. {ECO:0000255|PROSITE-
ProRule:PRU00190}.
DOMAIN 985 1001 Post-SET. {ECO:0000255|PROSITE-
ProRule:PRU00155}.
ZN_FING 553 609 Phorbol-ester/DAG-type.
{ECO:0000255|PROSITE-ProRule:PRU00226}.
ZN_FING 564 615 PHD-type. {ECO:0000255|PROSITE-
ProRule:PRU00146}.
COMPBIAS 34 80 Pro-rich. {ECO:0000255|PROSITE-
ProRule:PRU00015}.
METAL 943 943 Zinc. {ECO:0000255|PROSITE-
ProRule:PRU00190}.
METAL 989 989 Zinc. {ECO:0000255|PROSITE-
ProRule:PRU00155}.
METAL 991 991 Zinc. {ECO:0000255|PROSITE-
ProRule:PRU00155}.
METAL 996 996 Zinc. {ECO:0000255|PROSITE-
ProRule:PRU00155}.
BINDING 978 978 S-adenosyl-L-methionine.
{ECO:0000255|PROSITE-ProRule:PRU00190}.
VAR_SEQ 869 873 RIHGF -> INLYQ (in isoform 2).
/FTId=VSP_058520.
VAR_SEQ 874 1022 Missing (in isoform 2).
/FTId=VSP_058521.
SEQUENCE 1022 AA; 115660 MW; 121B74C4998D773A CRC64;
MVIAVEGGFV HEEEEVDHPI RYLPLGRVYS SSAPCPLPKK PRSAEDGKPP VIVYYRRRRK
KPRVEGPPPS PATAPPMLHP REDDEDEEVT RRKGSLKYEL LSLGQAPPAL GGDGEEPARR
RCLRRSGGAE RRGYFSEPKR RQRQGVHKEA ASSAGRRWLE LEIEAADPLA FVGLGCKVFW
PLDEDWYKGS ITGYNEATKK HSVKYDDGES EDLNLADERI KFSISSEEMK CRNLKFGISN
LNKRGYDELL ALAVSLHDYQ GLDPGDLVWA KLTGHAMWPA VVVDESNVPA NRALKPGRLD
QSILVQFFGT HDFARIKLKQ AVPFLNGLLS SLHLKCKQAR FYRSLEEAKE FLCTQLLPEN
MLQLQKSMEK GSSDANSNKD VHSCDNLSED KTAESGGDYD EMTPIELGNL RVSKLGRIVT
DSDYFHNKKH IWPEGYTAFR KFRSVKDPHV VILYKMEVLR NSDIKARPLF RVTSEDGTQI
DGSTPNTCWK EIYCRLKEKQ RNVASGLDRD VCQGSGSYMF GFSNPQIRQL IQELPNARSC
LKYFENAGDT FRGYRAVHVN WKDLDYCSVC DMDEEYEDNL FLQCDKCRMM VHARCYGELE
PLNGVLWLCN LCRPEAPRVS PRCCLCPVTG GAMKPTTDGR WAHLACAIWI PETCLKDVKR
MEPIDGLSRI NKDRWKLLCS ICGVAYGACI QCSHPTCRVA YHPLCARAAD LCVELEDDDK
IHLMLLDEDE DPCIRLLSYC KKHRQPSTER PSLESNLAKP AVVVQTDAVP PSGCARTEPY
NIHGRRGQKQ PQVMATASVK RLYVENMPYI VSGFCQNRVG HDAISEPIQS VGFLDVAHQE
AVGNVSSMIE KYKSMKATFR RRLAFGKSRI HGFGVFAKVS HKAGDMMIEY IGELVRPPIS
DIRERRIYNS LVGAGTYMFR IDDERVIDAT RAGSIAHLIN HSCEPNCYSR VISVLGDEHI
IIFAKRDINP WEELTYDYRF VSSDQRLPCY CGFPKCRGVV NDVEAEGQSA KIRVNRSELF
QQ


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