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Homeobox protein Hox-B5 (Homeobox protein H24.1) (Homeobox protein Hox-2.1) (Homeobox protein Mu-1)

 HXB5_MOUSE              Reviewed;         269 AA.
P09079; Q3ZAY8;
01-NOV-1988, integrated into UniProtKB/Swiss-Prot.
05-SEP-2006, sequence version 3.
28-MAR-2018, entry version 156.
RecName: Full=Homeobox protein Hox-B5;
AltName: Full=Homeobox protein H24.1;
AltName: Full=Homeobox protein Hox-2.1;
AltName: Full=Homeobox protein Mu-1;
Name=Hoxb5; Synonyms=Hox-2.1, Hoxb-5;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=C57BL/6J;
PubMed=2889591;
Krumlauf R., Holland P.W.H., McVey J.H., Hogan B.L.M.;
"Developmental and spatial patterns of expression of the mouse
homeobox gene, Hox 2.1.";
Development 99:603-617(1987).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-37.
Arnold J.M.;
"Studies on the Hox-B5 gene.";
Submitted (OCT-1994) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 194-259.
PubMed=4058581; DOI=10.1038/317745a0;
Jackson I.J., Schofield P., Hogan B.L.M.;
"A mouse homoeo box gene is expressed during embryogenesis and in
adult kidney.";
Nature 317:745-748(1985).
[6]
NUCLEOTIDE SEQUENCE OF 194-269.
PubMed=4075393; DOI=10.1016/0092-8674(85)90008-X;
Hauser C.A., Joyner A.L., Klein R.D., Learned T.K., Martin G.R.,
Tjian R.;
"Expression of homologous homeo-box-containing genes in differentiated
human teratocarcinoma cells and mouse embryos.";
Cell 43:19-28(1985).
-!- FUNCTION: Sequence-specific transcription factor which is part of
a developmental regulatory system that provides cells with
specific positional identities on the anterior-posterior axis.
-!- SUBCELLULAR LOCATION: Nucleus.
-!- TISSUE SPECIFICITY: Expressed in a broad spectrum of tissues.
-!- DEVELOPMENTAL STAGE: Embryo.
-!- SIMILARITY: Belongs to the Antp homeobox family. {ECO:0000305}.
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EMBL; M26283; AAA37842.1; -; mRNA.
EMBL; AK133512; BAE21695.1; -; mRNA.
EMBL; BC103595; AAI03596.1; -; mRNA.
EMBL; BC103596; AAI03597.1; -; mRNA.
EMBL; BC103604; AAI03605.1; -; mRNA.
EMBL; BC103607; AAI03608.1; -; mRNA.
EMBL; L36070; AAA50294.1; -; Genomic_DNA.
EMBL; X03033; CAB57812.1; -; Genomic_DNA.
CCDS; CCDS25296.1; -.
PIR; A43551; A43551.
PIR; B24777; B24777.
RefSeq; NP_032294.2; NM_008268.2.
UniGene; Mm.207; -.
ProteinModelPortal; P09079; -.
SMR; P09079; -.
BioGrid; 200379; 1.
STRING; 10090.ENSMUSP00000035423; -.
iPTMnet; P09079; -.
PhosphoSitePlus; P09079; -.
MaxQB; P09079; -.
PaxDb; P09079; -.
PRIDE; P09079; -.
Ensembl; ENSMUST00000049272; ENSMUSP00000035423; ENSMUSG00000038700.
GeneID; 15413; -.
KEGG; mmu:15413; -.
UCSC; uc007lbu.2; mouse.
CTD; 3215; -.
MGI; MGI:96186; Hoxb5.
eggNOG; KOG0489; Eukaryota.
eggNOG; ENOG410ZTBY; LUCA.
GeneTree; ENSGT00910000143983; -.
HOGENOM; HOG000231178; -.
HOVERGEN; HBG016849; -.
InParanoid; P09079; -.
KO; K09305; -.
OMA; CATASRE; -.
OrthoDB; EOG091G09XD; -.
PhylomeDB; P09079; -.
TreeFam; TF316310; -.
PRO; PR:P09079; -.
Proteomes; UP000000589; Chromosome 11.
Bgee; ENSMUSG00000038700; -.
CleanEx; MM_HOXB5; -.
Genevisible; P09079; MM.
GO; GO:0005829; C:cytosol; ISO:MGI.
GO; GO:0001650; C:fibrillar center; ISO:MGI.
GO; GO:0005634; C:nucleus; IDA:MGI.
GO; GO:0003677; F:DNA binding; IDA:MGI.
GO; GO:0003700; F:DNA binding transcription factor activity; IDA:MGI.
GO; GO:0000980; F:RNA polymerase II distal enhancer sequence-specific DNA binding; IDA:NTNU_SB.
GO; GO:0001205; F:transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding; IDA:NTNU_SB.
GO; GO:0009952; P:anterior/posterior pattern specification; IMP:MGI.
GO; GO:0048706; P:embryonic skeletal system development; IGI:MGI.
GO; GO:0048704; P:embryonic skeletal system morphogenesis; IMP:MGI.
GO; GO:0045446; P:endothelial cell differentiation; IDA:MGI.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IDA:NTNU_SB.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:MGI.
CDD; cd00086; homeodomain; 1.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017995; Homeobox_antennapedia.
InterPro; IPR001827; Homeobox_Antennapedia_CS.
InterPro; IPR017970; Homeobox_CS.
InterPro; IPR001356; Homeobox_dom.
InterPro; IPR020479; Homeobox_metazoa.
Pfam; PF00046; Homeobox; 1.
PRINTS; PR00025; ANTENNAPEDIA.
PRINTS; PR00024; HOMEOBOX.
SMART; SM00389; HOX; 1.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS00032; ANTENNAPEDIA; 1.
PROSITE; PS00027; HOMEOBOX_1; 1.
PROSITE; PS50071; HOMEOBOX_2; 1.
2: Evidence at transcript level;
Complete proteome; Developmental protein; DNA-binding; Homeobox;
Nucleus; Reference proteome; Transcription; Transcription regulation.
CHAIN 1 269 Homeobox protein Hox-B5.
/FTId=PRO_0000200129.
DNA_BIND 194 253 Homeobox. {ECO:0000255|PROSITE-
ProRule:PRU00108}.
MOTIF 176 181 Antp-type hexapeptide.
CONFLICT 81 81 Q -> K (in Ref. 1; AAA37842).
{ECO:0000305}.
SEQUENCE 269 AA; 29464 MW; B3508345236FB6A8 CRC64;
MSSYFVNSFS GRYPNGPDYQ LLNYGSGSSL SGSYRDPAAM HTGSYGYNYN GMDLSVNRSS
ASSSHFGAVG ESSRAFPASA QEPRFRQATS SCSLSSPESL PCTNGDSHGA KPSASSPSDQ
ATPASSSANF TEIDEASASS EPEEAASQLS SPSLARAQPE PMATSTAAPE GQTPQIFPWM
RKLHISHDMT GPDGKRARTA YTRYQTLELE KEFHFNRYLT RRRRIEIAHA LCLSERQIKI
WFQNRRMKWK KDNKLKSMSL ATAGSAFQP


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