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Homeobox protein Hox-D1 (Hox.lab1) (Labial protein) (Xlab)

 HXD1_XENLA              Reviewed;         300 AA.
Q08820; Q3KQ36; Q91767; Q91772;
01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
04-NOV-2008, sequence version 3.
05-DEC-2018, entry version 100.
RecName: Full=Homeobox protein Hox-D1;
AltName: Full=Hox.lab1;
AltName: Full=Labial protein;
Short=Xlab;
Name=hoxd1; Synonyms=lab;
Xenopus laevis (African clawed frog).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus;
Xenopus.
NCBI_TaxID=8355;
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND DEVELOPMENTAL
STAGE.
TISSUE=Dorsal lip;
PubMed=1677215; DOI=10.1126/science.1677215;
Blumberg B., Wright C.V.E., De Robertis E.M., Cho K.W.Y.;
"Organizer-specific homeobox genes in Xenopus laevis embryos.";
Science 253:194-196(1991).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Gastrula;
Kolm P.J., Frey J., Sive H.L.;
Submitted (NOV-1993) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Neurula;
NIH - Xenopus Gene Collection (XGC) project;
Submitted (OCT-2005) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 75-300.
PubMed=1678362; DOI=10.1101/gad.5.8.1321;
Sive H.L., Cheng P.F.;
"Retinoic acid perturbs the expression of Xhox.lab genes and alters
mesodermal determination in Xenopus laevis.";
Genes Dev. 5:1321-1332(1991).
[5]
FUNCTION.
PubMed=15196951; DOI=10.1016/j.ydbio.2004.02.029;
Dibner C., Elias S., Ofir R., Souopgui J., Kolm P.J., Sive H.L.,
Pieler T., Frank D.;
"The Meis3 protein and retinoid signaling interact to pattern the
Xenopus hindbrain.";
Dev. Biol. 271:75-86(2004).
-!- FUNCTION: Sequence-specific transcription factor which is part of
a developmental regulatory system that provides cells with
specific positional identities on the anterior-posterior axis.
Acts on the anterior body structures. Acts downstream of meis3 to
pattern the hindbrain. {ECO:0000269|PubMed:15196951}.
-!- SUBCELLULAR LOCATION: Nucleus.
-!- TISSUE SPECIFICITY: Expression is abundant in the gastrula dorsal
lip. {ECO:0000269|PubMed:1677215}.
-!- DEVELOPMENTAL STAGE: First detected at stage 10.5 and peaks at
mid-gastrula (stage 11.5). {ECO:0000269|PubMed:1677215}.
-!- SIMILARITY: Belongs to the Antp homeobox family. Labial subfamily.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAA49745.1; Type=Frameshift; Positions=135, 140, 294; Evidence={ECO:0000305};
Sequence=CAA43980.1; Type=Miscellaneous discrepancy; Note=Sequence of unknown origin at C-terminus.; Evidence={ECO:0000305};
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EMBL; M63873; AAA49745.1; ALT_FRAME; mRNA.
EMBL; L25857; AAA03480.1; -; mRNA.
EMBL; BC106402; AAI06403.1; -; mRNA.
EMBL; X62052; CAA43980.1; ALT_SEQ; mRNA.
PIR; A40357; A40357.
RefSeq; NP_001084035.1; NM_001090566.1.
RefSeq; XP_018092879.1; XM_018237390.1.
UniGene; Xl.53491; -.
ProteinModelPortal; Q08820; -.
SMR; Q08820; -.
GeneID; 399267; -.
KEGG; xla:399267; -.
CTD; 399267; -.
Xenbase; XB-GENE-482735; hoxd1.
HOVERGEN; HBG006089; -.
KO; K09301; -.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
GO; GO:0030902; P:hindbrain development; IMP:UniProtKB.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
CDD; cd00086; homeodomain; 1.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017970; Homeobox_CS.
InterPro; IPR001356; Homeobox_dom.
InterPro; IPR020479; Homeobox_metazoa.
Pfam; PF00046; Homeodomain; 1.
PRINTS; PR00024; HOMEOBOX.
SMART; SM00389; HOX; 1.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS00027; HOMEOBOX_1; 1.
PROSITE; PS50071; HOMEOBOX_2; 1.
2: Evidence at transcript level;
Developmental protein; DNA-binding; Homeobox; Nucleus; Transcription;
Transcription regulation.
CHAIN 1 300 Homeobox protein Hox-D1.
/FTId=PRO_0000200203.
DNA_BIND 200 259 Homeobox. {ECO:0000255|PROSITE-
ProRule:PRU00108}.
MOTIF 175 180 Antp-type hexapeptide.
CONFLICT 41 41 S -> P (in Ref. 2; AAA03480).
{ECO:0000305}.
CONFLICT 75 75 P -> A (in Ref. 4; CAA43980).
{ECO:0000305}.
CONFLICT 128 129 RT -> SP (in Ref. 1; AAA49745).
{ECO:0000305}.
CONFLICT 157 157 S -> L (in Ref. 1; AAA49745).
{ECO:0000305}.
SEQUENCE 300 AA; 33333 MW; B3C65BCBE83F1811 CRC64;
MNSYLEYTSC GDVLAFSPKF CRSDHRNMNL QPYPRSGADH SFMPVGGVPG SVAHQAPHQS
PALYAPCSLD VAYEPTPPSD YSFLHSSPDY DYYGSNHQIE ETGGHIPYGS SLFPGNGSYI
LNGQLSYRTL GEETQMAQCK EPLEVYPGGN LQSISPSPGT YPKPASPASD SYVSTFDWMK
VKRNPPKKSI PSEYGVTSPP CNVRTNFTTK QLTELEKEFH FNKYLTRARR IEIANSLQLN
DTQVKIWFQN RRMKQKKRER EGTLPNSPPS GPASNFCVKP PHLKSVNETA TLSPSKDASP


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