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Homeobox protein LUMINIDEPENDENS

 LUMI_ARATH              Reviewed;         953 AA.
Q38796; O22771; Q0KG59; Q0KG64; Q0KG74; Q0KG76; Q0KG77; Q0KG78;
Q0KG89; Q0KG90; Q0KG91; Q0KG92; Q0KG93; Q0KG94; Q0KG97; Q0WVK1;
Q58T20; Q9C5Z9;
05-DEC-2001, integrated into UniProtKB/Swiss-Prot.
05-FEB-2008, sequence version 2.
22-NOV-2017, entry version 146.
RecName: Full=Homeobox protein LUMINIDEPENDENS;
Name=LD; OrderedLocusNames=At4g02560; ORFNames=T10P11.15;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND DISRUPTION PHENOTYPE.
STRAIN=cv. Wassilewskija;
PubMed=7907507; DOI=10.1105/tpc.6.1.75;
Lee I., Aukerman M.J., Gore S.L., Lohman K.N., Michaels S.D.,
Weaver L.M., John M.C., Feldmann K.A., Amasino R.M.;
"Isolation of LUMINIDEPENDENS: a gene involved in the control of
flowering time in Arabidopsis.";
Plant Cell 6:75-83(1994).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=cv. Lz-0;
PubMed=15911588; DOI=10.1534/genetics.104.036533;
Werner J.D., Borevitz J.O., Uhlenhaut N.H., Ecker J.R., Chory J.,
Weigel D.;
"FRIGIDA-independent variation in flowering time of natural
Arabidopsis thaliana accessions.";
Genetics 170:1197-1207(2005).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS.
STRAIN=cv. Akita, cv. Alc-0, cv. All1-1, cv. All2-2, cv. Blh-1,
cv. Bui, cv. Bur-0, cv. Cla-1, cv. Cle-1, cv. Cro-1, cv. Ct-1,
cv. Cvi-0, cv. Cyr, cv. Dam1, cv. Dam2, cv. Edi-0, cv. Ge-0,
cv. Gre-0, cv. Ita-0, cv. Jea, cv. Kn-0, cv. Lac-1, cv. Mar-2,
cv. Mar1-2, cv. Mh-1, cv. Mol-1, cv. Mt-0, cv. N13 Konchezero,
cv. Nog, cv. Oy-0, cv. Par-2, cv. Pon, cv. Pyl-1, cv. Ran, cv. Rom-1,
cv. Sakata, cv. Sha, cv. St-0, cv. Stw-0, cv. Tsu-0, cv. Vou-3,
cv. Wha1, and cv. Wha2;
Roux F., Camilleri C., Durand S., Le Corre V.;
"Sequence variation at the luminidependens gene of Arabidopsis
thaliana and association with flowering time.";
Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[5]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[7]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 294-392.
STRAIN=cv. Columbia;
Fourmann M., Froger N., Brunel D.;
"Amplified consensus gene markers: tools designing for a genetic map
of Arabidopsis-known-function genes in Brassica.";
Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases.
[8]
FUNCTION.
PubMed=10363371; DOI=10.1046/j.1365-313X.1999.00442.x;
Aukerman M.J., Lee I., Weigel D., Amasino R.M.;
"The Arabidopsis flowering-time gene LUMINIDEPENDENS is expressed
primarily in regions of cell proliferation and encodes a nuclear
protein that regulates LEAFY expression.";
Plant J. 18:195-203(1999).
[9]
INTERACTION WITH SUF4.
PubMed=17138694; DOI=10.1105/tpc.106.045179;
Kim S., Choi K., Park C., Hwang H.J., Lee I.;
"SUPPRESSOR OF FRIGIDA4, encoding a C2H2-Type zinc finger protein,
represses flowering by transcriptional activation of Arabidopsis
FLOWERING LOCUS C.";
Plant Cell 18:2985-2998(2006).
-!- FUNCTION: Seems to play a role in the regulation of flowering time
in the autonomous flowering pathway by repressing FLOWERING LOCUS
C expression. {ECO:0000269|PubMed:10363371}.
-!- SUBUNIT: Interacts with SUF4. {ECO:0000269|PubMed:17138694}.
-!- INTERACTION:
Q9C5G0:SUF4; NbExp=3; IntAct=EBI-2126221, EBI-2126140;
-!- SUBCELLULAR LOCATION: Nucleus.
-!- TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf
primordia and floral buds.
-!- DEVELOPMENTAL STAGE: Accumulates prior to flowering in the
vegetative shoot apical meristem and after flowering in floral
meristems.
-!- DISRUPTION PHENOTYPE: Plants show late flowering phenotype
(mutants LD-1 and LD-3). {ECO:0000269|PubMed:7907507}.
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EMBL; U03456; AAA19115.1; -; mRNA.
EMBL; AY849995; AAX51265.1; -; Genomic_DNA.
EMBL; AM180092; CAJ53827.1; -; Genomic_DNA.
EMBL; AM180093; CAJ53828.1; -; Genomic_DNA.
EMBL; AM180094; CAJ53829.1; -; Genomic_DNA.
EMBL; AM180095; CAJ53830.1; -; Genomic_DNA.
EMBL; AM180096; CAJ53831.1; -; Genomic_DNA.
EMBL; AM180097; CAJ53832.1; -; Genomic_DNA.
EMBL; AM180098; CAJ53833.1; -; Genomic_DNA.
EMBL; AM180099; CAJ53834.1; -; Genomic_DNA.
EMBL; AM180100; CAJ53835.1; -; Genomic_DNA.
EMBL; AM180101; CAJ53836.1; -; Genomic_DNA.
EMBL; AM180102; CAJ53837.1; -; Genomic_DNA.
EMBL; AM180103; CAJ53838.1; -; Genomic_DNA.
EMBL; AM180104; CAJ53839.1; -; Genomic_DNA.
EMBL; AM180105; CAJ53840.1; -; Genomic_DNA.
EMBL; AM180106; CAJ53841.1; -; Genomic_DNA.
EMBL; AM180107; CAJ53842.1; -; Genomic_DNA.
EMBL; AM180108; CAJ53843.1; -; Genomic_DNA.
EMBL; AM180109; CAJ53844.1; -; Genomic_DNA.
EMBL; AM180110; CAJ53845.1; -; Genomic_DNA.
EMBL; AM180111; CAJ53846.1; -; Genomic_DNA.
EMBL; AM180112; CAJ53847.1; -; Genomic_DNA.
EMBL; AM180113; CAJ53848.1; -; Genomic_DNA.
EMBL; AM180114; CAJ53849.1; -; Genomic_DNA.
EMBL; AM180115; CAJ53850.1; -; Genomic_DNA.
EMBL; AM180116; CAJ53851.1; -; Genomic_DNA.
EMBL; AM180117; CAJ53852.1; -; Genomic_DNA.
EMBL; AM180118; CAJ53853.1; -; Genomic_DNA.
EMBL; AM180119; CAJ53854.1; -; Genomic_DNA.
EMBL; AM180120; CAJ53855.1; -; Genomic_DNA.
EMBL; AM180121; CAJ53856.1; -; Genomic_DNA.
EMBL; AM180122; CAJ53857.1; -; Genomic_DNA.
EMBL; AM180123; CAJ53858.1; -; Genomic_DNA.
EMBL; AM180124; CAJ53859.1; -; Genomic_DNA.
EMBL; AM180125; CAJ53860.1; -; Genomic_DNA.
EMBL; AM180126; CAJ53861.1; -; Genomic_DNA.
EMBL; AM180127; CAJ53862.1; -; Genomic_DNA.
EMBL; AM180128; CAJ53863.1; -; Genomic_DNA.
EMBL; AM180129; CAJ53864.1; -; Genomic_DNA.
EMBL; AM180130; CAJ53865.1; -; Genomic_DNA.
EMBL; AM180131; CAJ53866.1; -; Genomic_DNA.
EMBL; AM180132; CAJ53867.1; -; Genomic_DNA.
EMBL; AM180133; CAJ53868.1; -; Genomic_DNA.
EMBL; AM180134; CAJ53869.1; -; Genomic_DNA.
EMBL; AC002330; AAC78261.1; -; Genomic_DNA.
EMBL; AL161494; CAB80749.1; -; Genomic_DNA.
EMBL; CP002687; AEE82192.1; -; Genomic_DNA.
EMBL; CP002687; AEE82193.1; -; Genomic_DNA.
EMBL; AK226746; BAE98847.1; -; mRNA.
EMBL; AF229402; AAK00674.1; -; Genomic_DNA.
PIR; T01093; T01093.
RefSeq; NP_001190660.1; NM_001203731.2.
RefSeq; NP_192165.1; NM_116490.4.
UniGene; At.240; -.
ProteinModelPortal; Q38796; -.
SMR; Q38796; -.
BioGrid; 13195; 7.
IntAct; Q38796; 2.
STRING; 3702.AT4G02560.1; -.
PaxDb; Q38796; -.
EnsemblPlants; AT4G02560.1; AT4G02560.1; AT4G02560.
EnsemblPlants; AT4G02560.2; AT4G02560.2; AT4G02560.
GeneID; 827904; -.
Gramene; AT4G02560.1; AT4G02560.1; AT4G02560.
Gramene; AT4G02560.2; AT4G02560.2; AT4G02560.
KEGG; ath:AT4G02560; -.
Araport; AT4G02560; -.
TAIR; locus:2005532; AT4G02560.
eggNOG; ENOG410IMKC; Eukaryota.
eggNOG; ENOG4111YQX; LUCA.
InParanoid; Q38796; -.
OMA; ILRDESW; -.
OrthoDB; EOG093604XG; -.
PhylomeDB; Q38796; -.
PRO; PR:Q38796; -.
Proteomes; UP000006548; Chromosome 4.
Genevisible; Q38796; AT.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; TAS:TAIR.
GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
GO; GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR.
CDD; cd00086; homeodomain; 1.
Gene3D; 1.20.930.10; -; 1.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR001356; Homeobox_dom.
InterPro; IPR035441; TFIIS/LEDGF_dom_sf.
SMART; SM00389; HOX; 1.
SUPFAM; SSF46689; SSF46689; 1.
SUPFAM; SSF47676; SSF47676; 1.
PROSITE; PS50071; HOMEOBOX_2; 1.
1: Evidence at protein level;
Complete proteome; Developmental protein; Differentiation;
DNA-binding; Flowering; Homeobox; Nucleus; Reference proteome; Repeat.
CHAIN 1 953 Homeobox protein LUMINIDEPENDENS.
/FTId=PRO_0000049169.
REPEAT 498 502 1.
REPEAT 507 511 2.
REPEAT 516 520 3.
REPEAT 525 529 4.
REPEAT 534 538 5.
DNA_BIND 63 123 Homeobox. {ECO:0000255|PROSITE-
ProRule:PRU00108}.
REGION 498 538 5 X 5 AA repeats of Q-P-V-N-G.
COMPBIAS 648 941 Gln/Ser-rich.
VARIANT 151 151 T -> S (in strain: cv. Alc-0).
VARIANT 170 170 S -> C (in strain: cv. Ita-0).
VARIANT 329 329 Q -> K (in strain: cv. Cle-1, cv. Cyr,
cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0,
cv. Mar1-2, cv. Mol-1, cv. Par-2, cv.
Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv.
Vou-3, cv. Wha1 and cv. Wha2).
VARIANT 445 445 Q -> R (in strain: cv. Mar-2).
VARIANT 457 457 A -> C (in strain: cv. Cvi-0).
VARIANT 479 479 P -> A (in strain: cv. Cle-1, cv. Cyr,
cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0,
cv. Mar1-2, cv. Mol-1, cv. Par-2, cv.
Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv.
Vou-3, cv. Wha1 and cv. Wha2).
VARIANT 512 520 Missing (in strain: cv. Cle-1, cv. Cyr,
cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0,
cv. Mar1-2, cv. Mol-1, cv. Par-2, cv.
Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv.
Vou-3, cv. Wha1 and cv. Wha2).
VARIANT 518 518 V -> G (in strain: cv. Bur-0).
VARIANT 536 536 V -> F (in strain: cv. Cro-1, cv. Lac-1,
cv. Sakata and cv. Sha).
VARIANT 542 542 V -> I (in strain: cv. Sakata and cv.
Sha).
VARIANT 618 618 R -> Q (in strain: cv. Akita).
VARIANT 761 761 P -> L (in strain: cv. Lac-1).
VARIANT 848 848 Q -> QQ (in strain: cv. Cro-1, cv. Ita-0
and cv. Lac-1).
VARIANT 848 848 Q -> QQQ (in strain: cv. Blh-1).
VARIANT 848 848 Q -> QQQQQ (in strain: cv. Sakata and cv.
Sha).
VARIANT 856 857 Missing (in strain: cv. Alc-0, cv. Cla-1,
cv. Lac-1 and cv. Mar-2).
VARIANT 858 858 R -> S (in strain: cv. Kn-0, cv. Lz-0,
cv. Par-2 and cv. Pon).
VARIANT 874 874 S -> T (in strain: cv. Cro-1, cv. Sakata
and cv. Sha).
VARIANT 879 879 N -> K (in strain: cv. Cro-1).
VARIANT 884 884 H -> R (in strain: cv. Lac-1).
VARIANT 892 892 A -> G (in strain: cv. Cle-1, cv. Cro-1,
cv. Cyr, cv. Ge-0, cv. Ita-0, cv. Jea,
cv. Kn-0, cv. Lac-1, cv. Lz-0, cv. Mar1-
2, cv. Mol-1, cv. Par-2, cv. Pon, cv.
Rom-1, cv. Sakata, cv. Sha, cv. St-0, cv.
Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2).
VARIANT 923 923 N -> S (in strain: cv. St-0 and cv. Tsu-
0).
CONFLICT 320 320 N -> I (in Ref. 7; AAK00674).
{ECO:0000305}.
CONFLICT 650 650 T -> S (in Ref. 1). {ECO:0000305}.
SEQUENCE 953 AA; 105415 MW; 0DBFF4556190BA77 CRC64;
MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL
SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA LFGITVAQVR EFFVTQKTRV
RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI
PPEDIPPDIS DSDKYFVENI FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI
LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE
NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV QMVEQPGQKA AGKSPQTVRI
GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP
IQNNEAKTED TPVLSTVQPV NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS
AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE
ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL KNPDLVYALT SGKPSNLAGQ
DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ
VGTAVARSGT QLRVGSMQWH QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL
HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR


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EIAAB30959 Aristaless homeobox protein homolog,Arix,ARIX1 homeodomain protein,Paired mesoderm homeobox protein 2A,Paired-like homeobox 2A,Phox2a,Pmx2a,Rat,Rattus norvegicus
EIAAB24840 hMix,Homeobox protein MIXL1,Homeodomain protein MIX,Homo sapiens,Human,Mix.1 homeobox-like protein,MIX1 homeobox-like protein 1,MIXL,MIXL1
18-003-44021 ES cells cDNA. RIKEN full-length enriched library. clone C330003B14 product hypothetical Homeobox domain containing protein. ful - Cytoplasmic polyadenylated homeobox; Homeobox protein ESO1 Polyclonal 0.1 mg Protein A
EIAAB32587 Homeobox protein PHOX1,Homo sapiens,Human,Paired mesoderm homeobox protein 1,Paired-related homeobox protein 1,PMX1,PRRX1,PRX-1
EIAAB27320 Bagpipe homeobox protein homolog 1,BAPX1,Homeobox protein NK-3 homolog B,Homeobox protein Nkx-3.2,Homo sapiens,Human,NKX3-2,NKX3B


 

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